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Query: 5mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAAMVLQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAALast
1 -73.2005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model  100  1MAAMVLQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAA 191
2 -69.0005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  96  1MAAMALQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAA 192
3 -52.7004ce4_Y mol:protein length:216 MRPL24  ali model follow..  18  2.........RLSALLALASKVTLPPNYRYGMSRPGSLSDKRKNPPGT-----RRRRVPVEPISDEDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRYVGKTV-DYRGTMIPSEAPLLHNQVKLVDPTDRKPTDVEWRFTEAGERVRVSTRSGRIIPKPEFPRETWIDGPKDTSVEDA. 182
4 -52.1003j7y_V mol:protein length:216 uL24  ali model follow..  17  4......................SALLALASKVTLPPHYRYGMSPPGSVAPWIRRRPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKPEFPRETWIDGPKDTSVEDA. 182
5 -49.5004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  36  3................................................................VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKCGGALDTEE................... 110
6 -47.2004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  38  1..................................................................MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKF-VDGKKVRIAKKSGEEIKSNN................... 105
7 -46.7001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  33  2......................................................PRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQI-VDGKKVRVAVASGKTID...................... 115
8 -45.5003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  41  1..................................................................MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKV-EDGKKVRVAKKSGQVLDK..................... 103
9 -43.8003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  28  2.................................................................AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRF-EDGKKVRFFKSNSETIK...................... 104
10 -41.9003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  17  1.....MSGSYQHLSNVG-SRVMKRLGNRPKNFLPHSEKFIKKSTPEFMKSDLKEVDEKTSFKSEKEWKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTVPVPKQEGQTSHMITIPVSILGKDLRLVADIDDEKTPGKTRTVAVRDYRCVKGQPDLIIPWPKPDPIDVQTNLATDPVIAR. 204
11 -41.4005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  31  1..................................................................MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTAISTTQRSGGIVTQEAPIHVSNVMVVDS-DGKPTRIGYRVDETGKRVRISKRNGKDI....................... 105
12 -41.3005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  34  1..................................................................MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSAGASSGGIVTQEAPIHVSNVMVVDS-DGKPTRVGYRIDETGKKVRIAKTNGKDI....................... 105
13 -31.1001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  16  1...........................MSKQPDKQRKSQRRAPLHERHKQVRATLSADREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEE-----------VPRPLDTSNVRVTDLDLEDEKREARLESEDDS................................... 119
14 -22.3005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  3......................KTNPFVSSQARKVRKSYFNAKKDAKHVAMSAPLSKEQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKIN------------QAVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGHK......................... 136
15 -19.5002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  11  1....................MAKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKERAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVN------------ASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE.................................. 127
16 -19.4003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  15  5...........................KCGSRRKARRAHFQAPSHVRRVLMSAPLSKERAKYNVRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKAN------------STVAVGIHPSNVEITKLKLTHHRKSILERKDRSSK.................................. 124
17 -19.3005t2a_X mol:protein length:143 uL24  ali model follow..  15  5...........................KCGSRRKARRAHFQAPSHVRRVLMSAPLSKERAKYNVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKAN------------STVAVGIHPSNVEITKLKLTHHRKAILERKDRSSK.................................. 124
18 -19.1003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  16  2......................KFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKERLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVN------------ESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN.................................. 126
19 -19.0005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  12  2......................KFSSQVSSSRRKSRKAHFSAPSSVRRKIMTAPLCKERKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKAN------------ETVTIGIHPSKVVITKAKLDKDRKALLERKSRATT.................................. 126
20 -18.9005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  15  1.............................GSRRKARRAHFQAPSHVRRILMSAPLSKERAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKAN------------TTVPVGVHPSNVEITKLKLNHNRKAILE......................................... 111
21 -17.7003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  14  2......................KFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKERQKYNVRSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKAN------------TTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQV................................. 128
22 -11.9004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  16  1....................................................................FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNGLEFPISTLRKIINGEHQGDAGLVLMVEQGQVTFMSTQTSREVTITANNLSK..................................... 99
23 -10.7002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  32  18....................................................................FKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSD......................................................................................... 51
24 -10.7005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  24  60.....................................................................TKNNKVKVILGEDREATGVLLSIDGEDGIVRMD......................................................................................... 92
25 -10.5002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  21  2..............................................................SSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDM.................................................................................. 48
26 -10.5002ckk_A mol:protein length:127 KIN17  ali model follow..  24  72.....................................................................APGKRILVLNGGYRGNEGTLESINEKTFSATIV......................................................................................... 104
27 -9.8603qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  28  84............................................................EEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ......................................................................................... 125
28 -9.8205xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  26  21.......................................................................NKTVKIRQGGYKGKIGIVKEANGDRFRVELHNPN-------------------KTIPIPCSFLLIESTHGWVPYE............................................. 76
29 -9.6704zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  23  88...................................................................NIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENAAV---------------PIPITLPVEGVKIVSKHKD................................................. 147
30 -9.6305xon_W mol:protein length:612 Protein that forms a complex with Spt4p  ali model follow..  21  271................................................................NLVSFQPGDNVEIINGELNHLTGTVSSVNQSTIVSVRLHSDDDTI-------------NSETVEIPTSDLR--------------KIFNVGDHVRVIHGTGLIV....................... 352
31 -9.5602lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  29  123....................................................................FKVGDMVKIISGPFEDFAGVIKEIDPERQELKV--VTIFGR--------------ETPVVLHVSEVEKIE..................................................... 177
32 -9.5305oik_Z mol:protein length:1087 Transcription elongation factor SPT5  ali model follow..  20  472....................................................................FKMGDHVKVIAGRFEGDTGLIVRV--EENFVILHELKVLPRDLQLCSETASGVDVGGQHEWG---VQLDPQTVGVIVRL------ERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDS.. 589
33 -9.3001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  16  175................................................EEVQNILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV--ISIFGR--------------MTPVELDFDQVEKI...................................................... 248
34 -9.2102kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  18  10....................................................................FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV.......................................................................................... 42

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24