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Query: 5n5e_e mol:protein length:99 PFC_05175, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGLSINPTLINRDKPYTKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGGFEEVKELTGIEALast
1 -46.8005n5e_e mol:protein length:99 PFC_05175  ali model  100  1MGLSINPTLINRDKPYTKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGGFEEVKELTGIEA 99
2 -36.0002e0z_A mol:protein length:345 Virus-like particle  ali model follow..  98  1.MLSINPTLINRDKPYTKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGGFEEVKELTGIEA 98
3 -33.7005da5_A mol:protein length:116 Rru_A0973  ali model follow..  21  1MAQSSNSTHEPLEVLKEETVNRHRAIVSVMEELEAVDWYDQRVDASTDPELTAILAHNRDEEKEHAAMTLEWLRRNDAKWAEHLRTYLFTEGPITAANS 99
4 -33.0002hz8_A mol:protein length:115 De novo designed diiron protein  ali model follow..  20  29................DEQELARLIQEIVKAEKQAVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEWLKAASKQGNAEQFASLVQQQDEQRHVEEIE. 112
5 -31.6003k6c_A mol:protein length:95 Uncharacterized protein NE0167  ali model follow..  24  11............QELSDETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPAFDKELKDYLFTNKPI..... 92
6 -31.3005n5f_A mol:protein length:98 encapsulated ferritin  ali model follow..  15  1.MGSSEQLHEPAELLSEETKNMHRALVTLIEELEAVDWYQQRADACSEPGLHDVLIHNKNEEVEHAMMTLEWIRRRSPVFDAHMRTYLFTERPILELE. 97
7 -30.5005l8f_A mol:protein length:116 Rru_A0973  ali model follow..  18  1MAQSSNSTHEPLEVLKEETVNRHRAIVSVMEALEAVDWYDQRVDASTDPELTAILAHNRDEAKEAAAMTLEWLRRNDAKWAEHLRTYLFTEGPITAANS 99
8 -28.5001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  24  94...................TLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKREST...................... 151
9 -28.4004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  25  110........AWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKL.................... 180
10 -28.2002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  27  16...............MADFSLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGK................... 80
11 -27.4002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  24  93...................TPYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS................... 153
12 -25.7003q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  12  105..................KSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQYISKEEYEEIISS... 182
13 -25.6003q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  12  100..................KSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQYISKEEYEEIISS... 177
14 -24.8001jku_A mol:protein length:266 pseudocatalase  ali model follow..  21  117SLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEK.................... 195
15 -24.3001mft_A mol:protein length:53 Four-helix bundle model  ali model follow..  19  1.....................MDYLRELYKLEQQAMKLYREASEKARNPEKKSVLQKILEDEEKHIEWLETIN.......................... 52
16 -23.6002cwl_A mol:protein length:302 manganese-free pseudocatalase  ali model follow..  12  124LVMGAMGEHWNGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTGVE................... 203
17 -23.4001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  17  146..................YTQVETLVYMAFYERCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIA............. 213
18 -22.8003sid_A mol:protein length:180 Symerythrin  ali model follow..  18  116...................GLRRALETALEVETIESQAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE..................... 178
19 -20.6002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  23  111..................KDPKEILKVLLEAEQCAIRTWKEVCDMTYDPRTYDLAQRILQEEIEHEAWFLELLYGRP...................... 171
20 -20.6004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  17  9................KGSKTEENLKYAFAGESQANRRYLYFASKADVNDIAALFRSTAEGETGHAHGHLEYLEAVGDP.................... 74
21 -19.4004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  25  1MPQLEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPD--QRDELHKLAKMEQRHMKGFMACGKNL....................... 74
22 -19.4004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  24  1MPELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPE--DKEELTRLAKMENRHKKGFQACGNNLQVN.................... 77
23 -19.2001yux_A mol:protein length:202 Nigerythrin  ali model follow..  18  14.....TNFNMVADSKTSVGSTLENLKAAIAGETGAHAKYTAFAKAAREEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSAYSCDLNLIS 110
24 -19.2002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  25  84..................EDVREMLEYARQSEYETIKRYEKRKEQAAMTELVVKLEDMIADETNHMEELDRLLNDKA...................... 145
25 -19.2001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  16  86..................QAVPVIYESDADQEDATIEAYSQFLKVCKDIVTARLFERIIEEEQAHLTYYENIGSHIK...................... 147
26 -18.7001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  19  2.............KDLKGTKTAENLKQGFIGESMANRRYLYFAKRADEPEIAGLLRSIAEGETAHAFGHLDFIRQGGLT.................... 70
27 -18.7005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  19  8......SAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPD--HAEALKKLAAMENRHFKGFQSCARNL....................... 75
28 -18.3002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  20  101..................FDSVSLLNQNVSSERCAILRYQEIANFTNDYTTCDIAKHILAEEEEHEQDLQDYLTDIA...................... 161
29 -18.3002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  18  85..................QTLREQFEADLAIEYDVLNRLKPGIVMCQDTTSAVLLEKIVADEEEHIDYLETQLELMD...................... 146
30 -18.2005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  15  81..................QSVTEMFQADREVELEAIDRLRRGIEVMRDITSANVFEAILADEEHHIDYLETQLDLIE...................... 142
31 -18.2005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  21  1MQLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPE--SHDELIRLSKMESRHKKGFEACGRNL....................... 75
32 -18.1003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  18  96..................QNVKEVLEADLKGEYDARASYKESREICGDYVSKQLFDELLADEEGHIDFLETQLDLLA...................... 157
33 -18.0003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  20  81..................QTLRETLDADLAAEHDARTLYIEARDHCRDYPSKMLFEELIADEEGHIDYLETQIDLMG...................... 142
34 -17.9003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  15  81..................QTLREQFEADLAIEYEVLERLKPGIVLCQDATSARLLEQILADEETHIDYLETQLQLMD...................... 142
35 -17.8003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  18  83..................QTLREQFEADLAIEYDVLNRLKPGIVMCQDTTSAVLLEKIVADEEEHIDYLETQLELMD...................... 144
36 -17.8001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  25  81..................EGPRETLECDLAGEHDALKLYREARDYCGDIVSKNIFESLITDEEGHVDFLETQISLYD...................... 142
37 -17.7005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  27  130....................VTCLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEA............. 194
38 -17.4004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  25  31................YKDAYSRINAIYIEGEQEAHDNYIAIGTLLPD--HVEELKRLAKMEMRHKKGFTACGKNL....................... 88
39 -17.3004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  22  81..................QTVKEVLESDLAAEREARALYQEGAAYAGDFPSKNLFEELMGDEEHHIDFLETQLDLVS...................... 142
40 -17.3004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  25  31................YKDAYSRINAIVIEGEQEAHDNYIAIGTLLPD--HVEELKRLAKMEMRHKKGFTACGKNL....................... 88
41 -17.2003hl1_A mol:protein length:317 Ferritin like protein  ali model follow..  16  3............PPVWTLPRLYQHFQGAIDLELWTIPYYLTVLYSIKDTVPYRLIQAAVYQEMLHAQLVSNIANAYGYS.................... 71
42 -17.1005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  16  81..................EDVPELLACDLKLEQAAHATVREAIAHCRDYVSRDLFQDILDDTEEHIDYLETQIDLID...................... 142
43 -17.1001sof_A mol:protein length:156 Bacterioferritin  ali model follow..  22  81..................EHTKEMLECDLKLEQAGLPDLKAAIAYCGDYASRELLEDILESEEDHIDWLETQLDLID...................... 142
44 -17.0005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  26  130....................VTCLLIQALIIEAFAISAYNVYIPHA-DDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELER............. 194
45 -16.8001bcf_A mol:protein length:158 BACTERIOFERRITIN  ali model follow..  23  81..................EDVEEMLRSDLALELDGAKNLREAIGYAHDYVSRDMMIEILRDEEGHIDWLETELDLIQ...................... 142
46 -16.8004tof_A mol:protein length:158 Bacterioferritin  ali model follow..  22  81..................ENTQEMLQSDLNLELCATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQLGLIQ...................... 142
47 -16.8004cvp_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  23  82..................EDVEEMLRSDLALELDGAKNLREAIGYARDYVSRDMMIEILRDEEGHIDWLETELDLIQ...................... 143
48 -16.7003is7_A mol:protein length:158 Bacterioferritin  ali model follow..  22  81..................ENTQEMLQCDLNLELKATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQLGLIQ...................... 142
49 -16.7003e2c_A mol:protein length:158 Bacterioferritin  ali model follow..  23  81..................EDVEEMLRSDLALELDGAKNLREAIGYAHDYVSRDMMIEILRDERGHIDWLRTELDLIQ...................... 142
50 -16.7005d8x_A mol:protein length:158 Ferroxidase  ali model follow..  20  81..................ANTQEMLQCDLNLELKATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQLGLIQ...................... 142
51 -16.7005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  25  11................YREAYSRINGVVIVGEGLANRHFQMLARRIPA--DRDELQRLGRMEGDHASAFVGCGRNL....................... 68
52 -15.8001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  15  183..................NSPYLGFIYTSFQERATFISHGRQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKL....................... 243
53 -15.6004etr_A mol:protein length:153 Putative uncharacterized protein  ali model follow..  15  6..............QTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLELGGK.................... 70
54 -15.5004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  17  14...............DLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVK.................... 77
55 -15.4001b71_A mol:protein length:191 PROTEIN (RUBRERYTHRIN)  ali model follow..  19  2.............KSLKGSRTEKNILTAFAGESQARNRYNYFGGQAKKVQISDIFAETADQEREHAKRLFKFLEGGDLE.................... 70
56 -14.9002ib0_A mol:protein length:170 CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN  ali model follow..  13  18................EGSADNAALCDALAVEHATIYGYGIVSALS-PPGVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGYQLPMQVSSAADA 99
57 -14.6002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  14  158..................NSPYLGFIYTSFQERATFISHAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDP.................. 223
58 -14.4005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  10  4........NWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKED....................... 71
59 -14.3003r2h_A mol:protein length:154 Bacterioferritin  ali model follow..  20  1..............MQGHPEVIDYLNTLLTGELAARDQYFIHSRMYEDSKLYERLNHEMEEETQHADALLRRILLLEGTPRMRPDDIHPGTTVPEMLEA 88
60 -14.3003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  13  30.................RKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETL....................... 88
61 -13.5004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  13  33.................RKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETL....................... 91
62 -13.5001nnq_A mol:protein length:171 Rubrerythrin  ali model follow..  23  4................KRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQENIAKLFRAIAYAEFVHAKNHFIALGKLGKT.................... 69
63 -13.3005ux1_A mol:protein length:237 tRNA-(MS(2)IO(6)A)-hydroxylase-like  ali model follow..  18  122................EPQRMLDSFLVAGLIEARSHERMALLAEHSPDPQLRELYSDLLASEARHFGLYWVLCEQRYPRE................... 185
64 -12.6002lfd_A mol:protein length:115 Diiron protein  ali model follow..  16  29................DEQELARLNQEIVKAEKQGVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEWHKAASKQ........................ 87
65 -12.5005u1b_A mol:protein length:189 MtrE protein,Ferritin chimera  ali model follow..  22  25.................SKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDLFLFDHAAEEYEHAKKLIVFLNE........................ 85
66 -12.3003qz3_A mol:protein length:184 Ferritin  ali model follow..  24  5..........NQEFFMLSQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKGFDGALRAHAVEEMQHMQRLFTYVSETGAL.................... 76
67 -12.2003oj5_A mol:protein length:189 Ferritin family protein  ali model follow..  21  2...........TEYEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDSEDLPQLFYSQAVEERNHAMMLVQHLLD........................ 68
68 -12.1004zlw_A mol:protein length:168 Ferritin  ali model follow..  18  1................GSEELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEAYMLAESAEEREHGLGFVDFANK........................ 62
69 -11.9003wnw_A mol:protein length:212 Ferritin heavy chain  ali model follow..  20  31.................HQDAEAAINRQINLELYASYVYLSMSCYFDRDDVAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDRDDWESGLNA 117
70 -11.8001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  13  96..................ETMKVISNFLEVGEYNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKH.................... 156
71 -11.7004zkh_A mol:protein length:169 Ferritin  ali model follow..  18  1................GSEELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEAYMLAQSAEEREHGLGFVDFANK........................ 62
72 -11.6004cmy_A mol:protein length:203 FERRITIN  ali model follow..  20  3.................SKTILDKLNHQVNFEAASAHLYLQMSAWLLTQSLDAFFRAHAEEEKAHMMKLFDYINE........................ 63
73 -11.6001u7j_A mol:protein length:49 Four-helix bundle model  ali model follow..  23  1.....................MDYLRELYKLEQQAMKLYREASERVGDP----VLAKILEDEEKHIEWLETI........................... 47
74 -11.5005ls9_A mol:protein length:173 Ferritin, putative  ali model follow..  24  5.................SEKMVEALNRQINAEIYSAYLYLSMASYFDSIGLKNWMRVQWQEELCHAMKMFDFVSE........................ 65
75 -11.5004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  13  46IDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQEDVLFLTTFMHDEAKHVEMFSRWQQAV....................... 124
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.