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Query: 5nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst CPRGVYVNFYSQTECAENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLEKDGLYTIFAWGNIDDHYNIGEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNMEDGADQYIHTRANLREYTNRVTVSVDSLPHPENYEIKLASSNGSYRFDGTVAKADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREIFRTDLVGAILSSQYAQNINLRCINDFDIRLVAHHCNCPDDTYVVVQIWINGWLIHSYLast
1 -104.0005nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model  100  1CPRGVYVNFYSQTECAENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLEKDGLYTIFAWGNIDDHYNIGEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNMEDGADQYIHTRANLREYTNRVTVSVDSLPHPENYEIKLASSNGSYRFDGTVAKADSTYYPGETKVVGDSTCRAFFTTLKLESGHENTLSVTHKPTGREIFRTDLVGAILSSQYAQNINLRCINDFDIRLVAHHCNCPDDTYVVVQIWINGWLIHSY 281
2 -69.9004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  16  11CPHGVSLRFIYDYNMEYANAFAKKVDCLTLLVYDENGNYVDTRIVTGTELQDENYRMKLDLKQGNYHFVAYGGLACNFLMKYTPGEGTGYTDLQVELDSELTNPRRKNLHGLYWGELTLAT-------ADLYSEGTVEMMKNTNNIRVVLQQMNDDKKFEFEITDDNILFSYDNNLLENGMVTYTPWAQGQASAVAYAELSTSRLMVRDWPKLTVRRKADGVEIINIPLINYLLMLDLYASMDSQEFLDRESEWSMIFFLSPNLEWIKTYIKINDWTVRI. 305
3 -69.3003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  20  14CRLSVKFKYDY--NMEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVN-----FDGTVHQTETINLIRDTKIVRFGFQSYTDMNDYDYEIIESNGHLGHDNSLLDDVLSFRPYYMEQKDPATAYVDMNTMRLMEDRKTRLVLTEKASGKRVFDINLIDYLAMKNLSTQEYLDRQSNYHIIFFLS------ESWLAVQIVVNGWVHRI. 291
4 -65.5003pay_A mol:protein length:314 putative adhesin  ali model follow..  15  13CELW--LEFVFDYNMEYADAFNPQVKSVDVLVFDSDDKLLFTKSVKVAALVGGNRMSLTELDFGSYKVLTVGSLSDRFRLNKLVPGTTTLQQVIVSLKRETGG-VNFEFQHLYFGEVVEVDH---LPSNTNHKIYPVNLIRDTNRFNLALMGYEDGTQYTFEIQAPEAVYSWENEPTGQGPITYVPYPGEISDVVMSARLNTMRLLNRSDYKFIIRDANTEAEVWSYNLMTLLSIARPVSRYDGTEDRQSEWNLVFTVVEKNGGGFLQIGIVVGTWIHWLH 310
5 -32.6005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  12  6CSRRVDIKLDW------DGVTDQLPEGVRVIFYPKNGDGRKVDKYLSVRGGE------MKVPPGRYSVVVYNYNTESIRIR----GEESYETIEAYTGNEGTEKMVWSPDSLYVLNIDELKIEK----SEEVLRLDWKLESVVKKYSFAVEGLEYVATVVGSIDGLSDCYCIGKGRGVCSSQPI-YFEVKKGDNKVTAFFTAFKQVKAIILILKFIKTDNTVQEATIDVTEIIGTLENAGPPEIELPPDDKIEVDKPETPPNPDGGGGMGGNVDGWG.... 308
6 -25.2004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  12  2NQAVLTIKLKGRAAGPATDTEDAVINNYLVFLFREGGALDCAPYEGS----SNAAATITTGTTAAKKAYVVANTGALAGLFATVKTETDLLAVTGSLMDNTDNASTQTKTNLMSGESEVKFNGGTN------AQVTVSLSFVAAKIQLIVKDNRKNMT-AAVLLFAGKKGRFFGSAAEKVTAVSPGDFTINAGSTVFNHFYTFGNDGTTQPTILAIKSTKTVGGTSSPIFYPILFTNTDARHTIEPGKSYTVTVTLN-EEPVVSSSIEVTVTAAQWVTQP. 342
7 -25.0005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  13  20AMRGVYLLVNARAANMDAEDFEDRVHSLAMLVFDSNTGEKVAEHFSSSIGSGTSTYVFTKLKPGQRDFFFVANIPNMQTAMASIVNKSDMNHFMQVFRDLDPIHYHNATNNPMSRMYSNQTVTIGGTITKPDGENNVKLQRVVAKLDVNIVEGVENLQ-KIELCNANVHYRLRRVGATNQWLGYMPEAIVESTKWWGNTFFRLTTRGGLVYDVPIITHEGAIPGGQY-LPFAKGLLADKPSYTVYRNRHYIYRIKTL------PDKIEVKYSICDWNIVT. 344
8 -22.8003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  12  16...KAQLALAIKSEEGETTPTDADVNTLTVGVFGVDGWSVIYTKDATPNSDGTKDVGPQEVYAGEAHVVVVANAAPVIETTINLSDETLTKGLTMSSKVLDVTLVANTTNYIGYDDEVGDITVKDISGKEVYGAGPVPLVRDVASIALAGADIGNPEN-EVFIASAKGVSSVKKHVENDPALNHEFYVYENTKGEVKSGESNVNEAYANHTLLIVKGDTKENCYYAIPVGEEVTIDGTESKFYVQRNYKYEISLTII-YDPMISTNVSASVKVEPWNVKT. 396
9 -22.7004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  10  12.GAKLSVAVKASPNDVNELEGEAYINNLAVVVFNETGTELLGYKWEALSGAEHSAADVPTTKAVRARIIVLANVPRD--LLSTVSTYDEFQTRLVDLSSQSQTNLTMSSQVI--EEDNYLGYTDLGDQNVDGISDPILLTRVAARIDLVNISTRFAGT-AVGIYNMKTKSYYFSEADWGETEAPDAVRNSEDTSFEDLLVNDGTSISNTPFVHYVMENMKSDDHTMIAVKATLRLQNGYDHNFIRRNYVYRLRIYFD-PEPEVDTNLNIAVQVVGWGPVM. 349
10 -22.3004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  8  11.ETNATVSFIIESRAVGDDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIPCK--SGANRVLVVVANHNYELTGKSLNEVEALTTSLTAENQNAKNLIMTGKSAAIKPGSNHYGYPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNMATQ-KIAALVAKKDSKILNTNYAVGAGFYVLESKYDASNELRPTILCIYGKLLDKDGNP-FCDGDGTTYYPVLVNYIYSGAITQGQNKIVRNNHYKISLNIT-NPQPVQANLNVTCQVTPWVVVN. 364
11 -21.6003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  10  2...DVAYELPAHTTRAQLSI-QEKINSMRFIVFGSTPGGVRLDVNEHILLSTPDAQLLEVTSSNDILVVVIANEPQS--LTSQLDGIANLLTLQEMIYDISSILNSDGQIISATGMPMTGVIRDISIAPDETKTVQMVIERAVARVDVFIEAIDGGAV-SVTLHNFSHDLLTHSWTAATTETWAYSSAPGAENRKLLCSFYTAE-DYSDRLSISMVTGITGKVIESVTKVDGTGSPTAQPFTEIRRNNVYQVTARVG-----KIGIQILTISVEDWGERQ. 339
12 -21.0003r4r_A mol:protein length:296 hypothetical fimbrial assembly protein  ali model follow..  11  11.ELSFDMSLVLLTGDMQTKA-ELTIQNCHVAVFDKDGKRIYFKNFYSKDLGEMKGVRTFGKEDKKVSVLVVANANNA--NNSPFDNLTTYDGVDNSYTAKTIAKGPVTASLLKIGKSETTL-----KYNQDNAPVTVSLIQLSAKIEYTGVYKKENGE........................................................................................................................... 184
13 -20.6005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  12  1.............ERNQGSAAERLITNLYLLLFDQSGANPAKYYIAGNTFSGGIKLDMTQSEAGERKVYVVANVDNA--VKTALDAVANESDLQVKRTTAMPWSTDIASPFLMSGNKTHDFLANRL-------LDNVPLVRAIAKVELNIS.................................................................................................................................. 138
14 -19.7004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  11  2.DRSIEISIRVRYERNQGSAAERLITNLYLLLFDQSGANPAKYYITGNTFTGGTKLDMTQSEAGERKVYVVANVDNA--VKTALDAVANESDLQVKRTTAMPWSTDIASPFLMSGNKTHDFLANRL-------LDNVPLVRAIAKVELNIS.................................................................................................................................. 161
15 -14.9004jrf_A mol:protein length:508 putative cell adhesion protein  ali model follow..  6  3CSNDMSVSVAMPKSTGTRAL-EQNVKEVLLALFDASDVCLETKTLATTDYILNYDGKAFKVPSATAKVLAVVNPSDK--FKTACVASASWSAINGAVEQTLDEVTGTSKNNFMMINAGTIPDVATAISEAQADRSMIYVDRVVAKVSLGTNPDGLKVPAGVTCTFGDWALNITNK.......................................................................................................... 230
16 -14.5004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  6  12.RVALEATSGIRMNTRAYDKTWEAGDAIGIYMLNGDATDGNGNRKYTTAQTAENGSFTAAEGQTIY----FPVDASQRDFVAYYPYRETLADGNVYTVDVSVQTPQKDIDLMG--------AAKVEGKDKTDPKVAFVFTHKLVKLDITIKADGTSAGTTVSISNQQTAATYNGGDATVTTGTTKEIVLHTDGLKAEGIVLPAASTAGMALTFTVPGLEGQAFHWDVNSAA--------QSKAFVAGSKYLYTITIS------KAGVEVSSKVEDWT.... 270
17 -13.4003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  10  2SDDRVPLQVSSAVIKQEVVTRLAP-GAIGIFLSGTEPESGQKYVYSEGHWGPPTANDTIYLVGNDADVCAYDSYTDKTVIPLQSQDYVETEDIYYALNTMINGFTPAITFDMVHAYSLVELKISRENYFMPCE---------ISKITLKNSNLIKKGTINIAVDGSIHS---ETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERTDAEGGEFGLSVSLVIDGQQMLVEIPYSELGEFRQGEKYVIGLKIK------GTEIVPTVKALEWE.... 295
18 -11.1005nf2_A mol:protein length:501 Minor fimbrium subunit Mfa1  ali model follow..  11  7.....................KDKIEKVSIYMVPQGGPGLVESAEHNAILKPKKGIKVNSAVGKTVKVYVVLNDIAGKTQAQALGTVADGPNPATAAGKIAKKNGTTDETIMMTCLQPSDALSEANAIAGIKNQAKVTVERSVARAMVSTKAQSYETDIRWVVAQGERRFLLPNTHKSGANAASSDYKRGENGQFYVSMKSVTDPKVGGVAGMKAHKYVKGKVLYYAWLNPSTTSPDSWWNSPVVRNNIYHIHIK----LPDQDTFMSVEVTVLPWKVHSY 497
19 -10.6004dgu_A mol:protein length:247 putative cell adhesion protein  ali model follow..  12  73.............................................................ATGTVTFYAH------------------ALTDEAATRSGGNKRYLKGGQEHLFGTAEAAPGSQ---------NVSLKFKRMTVPVIILDENDRPYEGEAKVELSLKNEGTQD----------LLNGTIEINENALSENIEVKKVSEGVTTNVLPQKINAGEEIGTITVGGVTQKISAVEDLDLKAGSTLSVRLSKK------FGGGIIDGNVPLYR.... 247
20 -10.1004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  10  92..............................CEVDDNGAVISSSSTP--------------MKAGTYYFRILS------------PAKALNSKGFVNIGNGEYLLATDDRTQTAMTAVTITKIDEGGTLNNVQTLYLPPIINQTARMQFTVRAGEGVHTLEIEISGIQQPLDNTVKVGDQSASVRITQATRNADNSLVAHTGVLPTDRSHSISVLLNLKVNGNPQYQMLL----------TGLYLTAGHSYNYTATVK----ISNGVTVLTWQNRSWT.... 320
21 -9.9903sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model follow..  9  35.........................YALGVFRTTANTYAPLYNVKHIYSGGEWGADDVIKVDYRNASFFAY----------PYHTATGNYAGLAGGTTLTLQAQLFNAGEDICYGAGEASGGGPVSVYNP--FVEFLNMKHAYARLRLTLTRGEKFDKTKKSLDIASTAGATGGSAVAAGYVHNPNVNIATGKSVTYEYMFPPQPLDGSKLTILVTVDGVTRSC-----------DISTLGSSLDSGKYYGVSLTF-----TDVGIILSSAVVTVNN.... 278
22 -9.7605nf3_A mol:protein length:523 Minor fimbrium subunit Mfa1  ali model follow..  10  6....MSMTLSMPMGSARAGD-KDKIEKVSIYMVPQGGPGLVESAEHNAILKPKKGIKVNSAVGKTVKVYVVLNDIAGKTQAQALGTVADGPNPATAAGKIAKKNGTTDETIMMTCLQPSDALSEANAIAGIKNQAKVTVERSVARAMVSTKA................................................................................................................................. 216
23 -9.5203ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model follow..  8  15......IEIYGNINEVVNNVQETRADRIGVTVEADEDNATANAVDTYINIQ-STDNNIRLKGEGEFTLNAYYPYQG-----ANGTLPGTEGVIAKTISGADQTTDKQPQIDFLFAQATGVRAES---------PVTFDFSHKMTKIILKFKATNTLNNMKVYLKSLQLEGSFNAKSGATPNSELSMDIAKPAEGEMTASIILFPQDMPEKVLLEVRMNDETYTQY--------------PVQNLESGHAYPYNVTF-----ENPAMTITKAEIEDWI.... 284
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.