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Query: 5o31_R mol:protein length:96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GVRTSPTGEKVTHTGQVYDDGDYRKVRFVGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQQHHLast
1 -55.0005o31_R mol:protein length:96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model  100  1GVRTSPTGEKVTHTGQVYDDGDYRKVRFVGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQQHH 96
2 -54.0005lnk_b mol:protein length:96 Mitochondrial complex I, 13 kDa subunit  ali model follow..  97  1GVRTSPTGEKVTHTGQVYDDEDYRRVRFVGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQQHH 96
3 -49.9005xtb_T mol:protein length:95 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  89  1GVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQKEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFRQHH. 95
4 -48.0006g2j_R mol:protein length:116 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  81  21GVQVSPSGEKITHTGQVYDEKDYRRVRFVDRQKEVNENFAIDLIAQQPVNEVEHRIIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFKQHHH 116
5 -45.3005gpn_x mol:protein length:123 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  93  28GVRTSPTGEKVTHTGQAYDDGDYRRVRFSDRQKEVNENFAIDLIAEQPVSEVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQPHH 123
6 -40.1006gcs_M mol:protein length:136 NUMM SUBUNIT  ali model follow..  30  36.TKQAPNRDSTWAPAQASKTEIYKNNMVKDLSKQPMPYAGIELIAQQPVRFVHGNTAVCDGGPGAQGHPKIFINVDAP-GSHACQYCGTRYEKE-H 136
7 -35.7002jvm_A mol:protein length:80 Uncharacterized protein  ali model follow..  34  2.............................RRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRYIHESF 68
8 -33.1002jz8_A mol:protein length:87 Uncharacterized protein BH09830  ali model follow..  15  1................................MADYNIPHFQNDLGYKIIEIGVKEFMCVGATQPFDHPHIFIDMGST-DEKICPYCSTLYRYDPS 63
9 -31.1002jrr_A mol:protein length:67 Uncharacterized protein  ali model follow..  33  3...........................................IQAPETKIVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKYVLKGS 55
10 -11.6002y69_F mol:protein length:129 CYTOCHROME C OXIDASE SUBUNIT 5B  ali model follow..  14  35..GGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEED--NSTVIWFWLHK-GEAQRCPSCGTHYKLLAH 129
11 -10.1004njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  12  4....................................SSSGLVPRGSHMTYAVKEIFYTLQGEGANAGRPAVFCRFAG---NLWSGREEDRAQAV.. 59
12 -9.8401f2i_G mol:protein length:73 FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12  ali model follow..  21  27..........................................................CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
13 -9.5102ctd_A mol:protein length:96 Zinc finger protein 512  ali model follow..  21  2.......................SSGSSGRIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTIEGLKKHMENC-----KQEMFTCHHCGKQLRMKYH 81
14 -9.3902odx_A mol:protein length:80 Cytochrome c oxidase polypeptide IV  ali model follow..  20  30....................................................DYRYVGCTGSPAG-SHTIMWLKPTV-NEVARCWECGSVYKLNHH 80
15 -9.1002wbt_A mol:protein length:129 B-129  ali model follow..  11  19GIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCP-LMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDH 119
16 -9.0902atc_B mol:protein length:152 ASPARTATE CARBAMOYLTRANSFERASE, REGULATORY CHAIN  ali model follow..  11  51..GEMGRKDLIKIENTFLSEDEVDELALYAPQATVNRINDYEVVGKSRPSLPEIDVLVCPDSNCISHAEPVFAVRRADDIALKCKYCEKEFSHNV. 148
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.