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Query: 5o60_V mol:protein length:105 50S ribosomal protein L24, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDILast
1 -62.2005o60_V mol:protein length:105 50S ribosomal protein L24  ali model  100  1MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGKDI 105
2 -62.0005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  87  1MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTAISTTQRGARSGGIVTQEAPIHVSNVMVVDSDGKPTRIGYRVDEETGKRVRISKRNGKDI 105
3 -52.2004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  52  1MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQ---LNPEGGILETEAAIHVSNVQLLDPTNEPTRVGYKF--VDGKKVRIAKKSGEEI 101
4 -51.5003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  57  1MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQ---ANPQGGISNQEAPIHVSNVMPLDPTGEVTRVGYKV--EDGKKVRVAKKSGQVL 101
5 -51.1004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  47  5MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSP---KYPQGGFIEKEAPLHASKVRPICPCGKPTRVRKKFL-ENGKKIRVCAKCGGAL 106
6 -49.7003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  40  3AKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPA---LNQPGGIVEKEAAIQVSNVAIFNATGKADRVGFRF--EDGKKVRFFKSNSETI 103
7 -49.5001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  49  14LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSM---TNPQGGQEQRELALHASKVALVDPTGKATRVRKQI--VDGKKVRVAVASGKTI 114
8 -43.1005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  36  68MHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKE---EGEQGQIIKIEAAIHSSNVMLYSKQEVASRVGHKIL-EDGRKVRYLIKTGEIV 169
9 -41.3005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  34  67RHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKE---EGEQGQIIKIEAAIHSSNVMLILKQEVADRVGHKIL-EDVRKVRYLIKTGEIV 168
10 -39.5003j7y_V mol:protein length:216 uL24  ali model follow..  34  54WYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTM----DYRGTMIPSEAPLLHRQVKLVDPDRKPTEIEWRFT-EAGERVRVSTRSGRII 154
11 -39.5004ce4_Y mol:protein length:216 MRPL24  ali model follow..  35  54WHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRYVGKTVDY----RGTMIPSEAPLLHNQVKLVDPDRKPTDVEWRFT-EAGERVRVSTRSGRII 154
12 -33.1003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  17  61WKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTVPVPKQFWLEGQTSHMITIPVSILGKDLRLVADIDDEKT....................... 142
13 -30.2001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  30  41VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGE--------------EVPRPLDTSNVRVTDLDLEDEKREARLESEDDS............ 119
14 -21.3005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  21  48LPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQ--------------AVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGHK.. 136
15 -18.7003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  40  45MPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKANGS--------------TVAVGIHPSNVEIT............................... 104
16 -18.6005t2a_X mol:protein length:143 uL24  ali model follow..  38  45MPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKANGS--------------TVAVGIHPSNVEIT............................... 104
17 -18.5005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  38  39MPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGT--------------TVPVGVHPSNVEIT............................... 98
18 -18.5002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  28  48LPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGA--------------SVPINLHPSKLVIT............................... 107
19 -18.0003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  36  47LPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGE--------------STFIGIHPSNVVLT............................... 106
20 -17.9005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  30  47LPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGE--------------TVTIGIHPSKVVIT............................... 106
21 -15.8003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  34  47MPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGT--------------TVHVGIHPSKVVIT............................... 107
22 -12.1002ckk_A mol:protein length:127 KIN17  ali model follow..  18  72...APGKRILVLNGGYRGNEGTLESINEKTFSATIV..................................................................... 104
23 -11.6002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  23  18..FKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSD..................................................................... 51
24 -11.5004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  24  1..FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNGFTTPLEHVTVINGEHQGDAGLVLMVE.......................................... 75
25 -11.3003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  37  91.GLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ..................................................................... 125
26 -11.3002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  19  7.GFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDM.............................................................. 48
27 -11.2005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  30  60...TKNNKVKVILGEDREATGVLLSIDGEDGIVRMD..................................................................... 92
28 -11.1004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  34  88.NIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLE..................................................................... 122
29 -10.5002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  21  10..FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV...................................................................... 42
30 -10.2002lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  27  123..FKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN-VTIFGRETP........................................................... 165
31 -10.1006duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  21  7..FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV...................................................................... 39
32 -10.1002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  18  9..YEVGESVTVMDGPFATLPATISEVNAEQQKLKV...................................................................... 41
33 -10.0005ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  20  130..FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS-VSIFGRATP........................................................... 172
34 -9.9101nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  39  5..FREGDQVRVVSGPFADFTGTVTEINPERGKVKV...................................................................... 37
35 -9.6801m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  29  194.EFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVM-ISIFGRMTP........................................................... 237
36 -9.5802joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  8  4..IEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVK................................. 73
37 -9.4702e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  32  21.....GQTVRISQGPYKGYIGVVKDATESTARVELH..................................................................... 51
38 -9.4404ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  20  1..LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLK..................................................................... 34
39 -9.3005xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  35  21.....NKTVKIRQGGYKGKIGIVKEANGDRFRVELH..................................................................... 51
40 -9.3005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  16  8.SCKPGTIAIILAGRFRGRRVVILKQLPRNGPLVISGPMKYNGVPIRRIDSR------IIATSTKVDIKNVDV................................ 74
41 -9.2905xon_W mol:protein length:612 Protein that forms a complex with Spt4p  ali model follow..  25  330.IFNVGDHVRVIHGKHTDDTGLIVEVNGDKVEFISN..................................................................... 364
42 -9.2605oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  28  60.NIHVKDIVKVIDGPHSGREGEIRHLFRS............................................................................ 87
43 -9.2305t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  16  3..LKPGKVVIVTSGRYAGKKAVIVQNTDSKSKSLIAGMKKYPKKVVRGMSKRTIQRRSRVGV---LRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKA..... 104
44 -9.0403j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  18  5..MKPGKVVLVLAGRYSGRKAVIVKNIDDGTSALVAGIDRYPRKVTAAMGKKKIAKRSKIKS---VKVYNYNHLMPT............................ 83
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.