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Query: 5o9z_I mol:protein length:312 Pre-mRNA-splicing factor 38A, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPTLRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHRHRSHSKSPERSKKSHKKSRRGNELast
1 -78.8005o9z_I mol:protein length:312 Pre-mRNA-splicing factor 38A  ali model  100  1MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPRVSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPTLRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRSHRHRSHSKSPERSKKSHKKSRRGNE 312
2 -73.0005f5s_A mol:protein length:181 Pre-mRNA-splicing factor 38A  ali model follow..  100  3MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEP..................................................................................................................................... 181
3 -64.5005f5t_A mol:protein length:223 Putative uncharacterized protein  ali model follow..  42  18LDERGSSGPLAPNGLNPATIMEKAVRERIVESYFWKEQCFGVNEADIVDRVVEVRFVGGVTGVTQKPSPFLCLAFKLLQLAPGDDILKEYLGGEKFKYLRALAAFYIRLTRPDKEVYTLLEPFLEDRRKLRRKGKNG-TSLTYMDEFIDDLLTKDRVCSTSLWKMRRRDILEDLDLLEPRVSPLGSLEDILEEEEQAAKNEDGE............................................................................................................ 223
4 -57.0005nrl_M mol:protein length:242 Pre-mRNA-splicing factor 38  ali model follow..  20  6FQVESNISPKQLNNQSVSLVIPRLTRDKIHNSMYYKVNLSNETMVELLKVMIAFGTIKGQNGHLHMGIEFKCILMKLIEIRPNFQQLNFLLNVKDSKYIIALLLVYARLQDLIKLFKVQLYKYSQHYFKLKSFSYNEELCIIHIDELVDWLATQDHIWGIPLGKCQWNKIYNSDEESSSSESESNGDSEDDNDTSSES.................................................................................................................. 242
5 -11.2003pgw_S mol:protein length:437 U1-70K  ali model follow..  14  251.........................................................................................................................................................................ERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEAR 393
6 -10.4005mqf_T mol:protein length:908 Pre-mRNA-splicing factor CWC22 homolog  ali model follow..  7  697............................................................................................................................SSEESDSSSISSHSSASANDVRKKGHGKTRSKEVDKLIRNQQTNDRKQKERRQEHGHQETRTERERRSEKHRDQNSSGSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKRGERRNSFSENEKHTHRIKDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSSR 884
7 -10.2005o9z_P mol:protein length:800 U4/U6.U5 tri-snRNP-associated protein 1  ali model follow..  12  3..........................................................................................................................................................................................SSKKHRGEKEAAGTTAAAGTGGATEQPPRHREHKKHKHRSGGSGGSGGERRKRSRERGGERGSGRRGAEAEARSSTHGRERSQAEPSERRVKREKRDDGYEAAASSKTSSGDASSLSIEETNKLR. 127
8 -9.6305lj3_H mol:protein length:591 CWC22  ali model follow..  12  285..............STNDVEFKKKIYLVLKSSLSGDEAAHKL-VDIIIKSSLQESTFSKFYS-----SERMITFHRSWQTAYNEQNYTQDIEDYETDQLRILGKFWGHLISYEFLPMDCLKII--KLTEEESCPQGRIFIKFLFQELVNELGLDELQLRLNSSKLDGMFPLEGDAEHIRYSINFFTAIGLGLLTEDMRSRLTIIQEVEDAEEEEKKLREEEELEKLRKKARESQPTQGPKIHESRLFLQNDTRDNSRSRSPFTVETRKRARSRTPPRGSRNHRNRSRTPPRRPKNHRNRSRTPPARRQRHR. 591
9 -9.5205z56_X mol:protein length:396 Smad nuclear-interacting protein 1  ali model follow..  11  2...................................................................................................................................................................KAVKSERERGSRRRHRDGDVVLPAGVVVKQERLSPEVAPPAHRRPDHSGGSPSPPTSEPARSGHRGNRARGVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVKQEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQR 150
10 -9.1502h3o_A mol:protein length:61 MerF  ali model follow..  13  7....................................................................VALSSFTPVLVILLGVVGLSALTGYLDYVLLPALAIFI.............................................................................................................................................................................................................. 44
11 -9.1005a40_A mol:protein length:128 PUTATIVE FLUORIDE ION TRANSPORTER CRCB  ali model follow..  14  1MLTYAPLNFIAI-GAWLRWVLGGTLTANLVGGYLIGVMVALIASHPEWPAWIRLAAVTGFLGGLTTFSTFSAETVDMLCRGVYATAAAYAGASLAGSLAMTLGLATVRLLLR........................................................................................................................................................................................................ 128
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.