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Query: 5oik_Z mol:protein length:1087 Transcription elongation factor SPT5, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKLLEALast
1 -240.0005oik_Z mol:protein length:1087 Transcription elongation factor SPT5  ali model  100  1MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKLLEA 1087
2 -120.0005xon_W mol:protein length:612 Protein that forms a complex with Spt4p  ali model follow..  28  1............................................................................................................................................................GPGSASTTAPQRLLIPTVDDPGIWGVKVRLGKEKDVVRQILKKKLAREGTKNPLEIYSAFQRDSFKGHVYIEARKAEAINDALKGNVNVFSNN-SKFLVGIVEYKDLLRPKSSDVKLTRGSYVRVKNGKFKGDLAQVDEVLENGLEARLKLVPRLDYGKDLSHLSTSSSVDSTTSKFRPAQRLFSEAEARVHEPTIRRDRDGFVTYGGEEYYEGFLYKTFRLQNLIVNSINPTLNELSLFQSNEESLSTIADSLKETAKNLVSFQPGDNVEIINGELNHLTGTVSSVNQSTIVSVRDDTINSETVEIPTSDLRKIFNVGDHVRVIHGKHTDDTGLIVEVNGDKVEFISNQTKRTVIVFSNYLIKSTDSTVSINESGRFELHDLVQVNSDLVGIVIRAQKDSFDVLCSDGKLLSLPPVSIYSKLNLNPNQQIAIDSNGVEVKVGDTVREFTGERRQGTILHVYRNFLFLRSREIVENQGVFVTSSNRVKTITSKSNGTGGQIS----------------GPDLSRMNPSRVIPPPSIPVANQRMTGRDPTLNKTVKIRQGGYKGKIGIVKEANGDRFRVELHNPNKTIPIPCSFLLIESTHGWVPYEDFVAS................................................................................................................................................................................................................................................................................................................................ 610
3 -45.8003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  26  2...............................................................................................................................................................................AGKIFAVRVTHGQEETTAKLIYSKVRT-----YNLPIYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHARGVLPG--EVPFKEIEHFLEEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISKLQKEEAAALE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 157
4 -42.1004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  22  2..................................................................................................................................................................................IFAVRTMVGQEKNIAGLMASRA-----EKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRVR--GIVPGTIAIEEIEPLLTPKKIIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENAAVPIPITLPVEGVKIVSKHKD.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 147
5 -41.3004ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  31  1................................................................................................................................................................................................................................................................................LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKFDEIDPTTQQRKSRRPTFRAPPQLFNPTMALRLDQNLYKRDDRHFTYKNEDYIDGYLYKSFRIQHVETKNIQPTVEELARFGS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 129
6 -39.6003h7h_B mol:protein length:106 Transcription elongation factor SPT5  ali model follow..  93  2............................................................................................................................................................................SHMDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLGSGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 106
7 -39.5002exu_A mol:protein length:200 Transcription initiation protein SPT4/SPT5  ali model follow..  16  2................................................................SSERACMLCGIVQTTNEFNRDGCPNCQ------------GIFEEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSVDHSIAGMYAIKVDGRLPAEVVELLPHYKPRDGSGSATIWGVRCRPGKEKELIRKLLKKKFNLDRAMGKLKILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIYIS--QKLLIPVQELPLLLKPNLE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 194
8 -34.7004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  38  1...................................................................................................................................................................................................................................................................................................................................................................................................................................FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNGFT--TPLEFPISTLRKIFEPGDHVTVINGEHQGDAGLVLMVEQGQVTFMSTQTSREVTITANNLSK....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 99
9 -33.9005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  98  1................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GPWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKLLEA 111
10 -32.7003lpe_A mol:protein length:92 Putative transcription antitermination protein nusG  ali model follow..  24  1.......................................................................................................................................................................GSRRASVGAHMIFAVRTMVGQEKNIAGLMASRA-----EKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRVRGI--VPGTIAIEEIEPLLT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 91
11 -30.4005oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  99  2......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PWGELVQLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLA......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 113
12 -29.7003ewg_A mol:protein length:91 Putative transcription antitermination protein nusG  ali model follow..  26  2..................................................................................................................................................................................IFAVRTMVGQEKNIAGLMASRAEK-----EQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRVRGI--VPGTIAIEEIEPLLTPKLE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 85
13 -28.1002ckk_A mol:protein length:127 KIN17  ali model follow..  18  1.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVKGRRVEGIQYEDISKLA.. 127
14 -23.7002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  93  4.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GSSGEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 69
15 -22.2005xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  29  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GPGPSIPVANQRMTGRDPTLNKTVKIRQGGYKGKIGIVKEANGDRFRVELHNPNKTIPIPCSFLLIESTHGWVPYEDFVASD............................................................................................................................................................................................................................................................................................................................... 82
16 -21.4002e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  94  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GSSGSSGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSR........................................................................................................................................................................................................................................................................................................................................... 70
17 -16.9002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  89  1............................................................................................................................................................................................................................................................................................................................................................................................................................GSSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKY........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 59
18 -16.6002xhc_A mol:protein length:352 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  10  5...................................................................................................................................................................................WIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIERLILSPKAKLHVNNGKNKGDLIAEEPPIYARRSGVIVDVKNVRKIVVETIDRKYTKGTKVKQGLPLSKNEEYICELDGKIVEIERMKKVVV--YYIPLDVFDRDRIKKGKEVKQGEMLAEARKFFAKVSGRVEVVDYSTRKEIRIYKTKRRKLF-PGYVFVEMIVMGFVSSGGQPKDREMRPILRLAGLEEYEEKKKPVKVELG--FKVGDMVKIISGPFEDFAGVIKEIDPERLKVNVTIFGRETPVVLHVSEVEKI........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 352
19 -16.0005ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  14  3..........................................................................................................................................................................MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGTSDRPAPISDKEVDAIMNRLQQKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 164
20 -15.8002lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  15  1............................................................................................................................................................................GAMKKKWYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIQRRKSEKLFPGYVFVEMIMNDEAYNFVRYVMGFVSSGGQPVPVKDREMRPILRLAGLELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNV............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 157
21 -15.4001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  14  1..................................................................................................MSEQQVQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEIVPAEEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESVEGDTCVITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEHVFRPVMVGGKPVPLKEEEVQNILNQIKRKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMI............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 229
22 -14.0002oug_A mol:protein length:162 Transcriptional activator rfaH  ali model follow..  16  4...................................................................................................................................................................................WLLYCKRGQLQRAQEHLERQAVNITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINGVSHFVRFGASPAIVPSAVIHQLSVYKPKPATPYPGDKVIITEGAFEGFQAIFTEPDGEARMLLLNLINK......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 148
23 -13.2005xjc_x mol:protein length:703 Protein CASC3  ali model follow..  11  1MADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEE--ESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHL-----DD-----------EDRKNPAYIPRK-----------------------GLFFEHDLRGQT-----------------------QEEEVRPKGRQRKLWKDEGRW---EHDKFRED--------EQAPKSRQELIALYDIRSAHNPDDIKPRRIRKPRYGSPPQR............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 269
24 -13.2005ife_C mol:protein length:1304 Splicing factor 3B subunit 1  ali model follow..  9  1................................................................................................................................................................................................................................................................................................................................................................................................................................................MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYY----DQ-EIYGGSDSRFAGYVTSIAAT-----LEDDDDDYSSSTSLLGQKKPGYHAPVA----------------------LLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTY-----------MDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPG--------------RAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKARKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTNMDEYVRNTTARAFAVVASA 638
25 -13.1004dt5_A mol:protein length:143 Antifreeze protein  ali model follow..  10  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GYSCRAVGVDGRAVTDIQGTCHAKATGAGAMASGTSEPGSTSTATATGRGATARSTSTGRGTATTTATGTASATSNAIGQGTATTTATGSAGGRATGSATTSSSASQPTQTQTITGPGFQTAKSFARNTATTTVTAS..................................................................................................................... 137
26 -11.1003jcr_O mol:protein length:240 SmB  ali model follow..  11  2......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TVGKSSKMLQHIDYRMRCILQDGRIFIGTF---------KAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLG-----LVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP............................................................................................................................................ 240
27 -10.6005w3n_A mol:protein length:241 RNA-binding protein FUS  ali model follow..  9  20.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MDPASNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRG...................................................................................................................... 235
28 -10.4005oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  10  486.ADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNAS--AIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKKLCRKVGNDHMELKKE......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 747
29 -10.4005fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  10  474.ADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSITEKDI-AIGDGKVNIKEFGKFIRRKYPGAENKKLMFAIVKKLCRKVGNDHMELKKE......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 735
30 -10.2005a5t_C mol:protein length:843 EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C  ali model follow..  12  91.QNPEQSADEDAEKNEEDSEGSSDEDEDEDGVSAAAFLKKKAEAPSGESRKFLKKMEDEDEDSEDSEDDEEWDTGSTSSDSDSEEEEGKQTALASRFLKKAPTTEEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGEWERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNE--ILQARGKKGTDRAAQIELLQLLVQIASENN-FNIIASLYDYNPNLATYMKPEMWQKCLDCINELMDILFANPNIFVGEILEESENLQNVDQPLRVRGCILTLVERQEYVEHLRYLEEKGTTEEICRVYLR-KFDYKAHQRQLTPPEGSSKSEQDQAENEGEDSAVLMERLCKYIYAKDRHHYLHSRWYQARDLMLMSHLQDNIQHADPPVQI--ICAFRQGLTKDAHNALLDIQSSGRAKELRNQEQEKVINLELLECVYLVSAMLLEIPYMAAHESDARRRM------ISKQFSMREHVAMKMGDWKTCHSFIINEKMNGVWDLFPEADKVRTMLVRKIQEESTYSSVYDSISMETLSDMFELDLPTVHSIISINEELMASLDQPTQTVVMAQQNLALQLAEKLGSLVENNERVFDHKQ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 808
31 -10.2005axw_A mol:protein length:1056 CRISPR-associated endonuclease Cas9  ali model follow..  10  270ITRDENEKLEYYEKFQIIENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGKPEFTNLKVYHDIKDAELLDQIAKILTIYQSSEDIQEELTNLNSELTQEEIEQISNLKGYTGTHNLSL----------KAINLILDELWHTNDNQIAIFNRLKLVPKKVDLSQQKEIPTTLVDDFI-VVKRSFIQSIKVINAIIKKY-------------------GLPNDIIIELAREKNSKDAQKMINEMQKRNRQTNERIEEIIRTTGKENAKYLIEKIKLHDMQEKCLYSLEAIPLEDLLNNPFNYEV-IIPRVSFDNSFNNKVLVKQEEASKKGNRTPFQYLSSSDSKISYETFKKH--------LNLAKGKGRISKTKKEYLLEERDINRFSVQKDFINRN--VDTRYATRGLMNLLRSYFRVNNKVKSINGGF-------------------------------TSFLRRKWKFKKERNK-GYKHHAEDALIIANADFIFK.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 719
32 -10.1002mk0_A mol:protein length:120 HEP200 protein  ali model follow..  11  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SYYTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDSARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNCSPTMLPSPSPSAVTVPLTPTMLPSPS.................................................................................................................................... 114
33 -9.7204v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  10  468FADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFGEKKIDEDGEKIKKALQKTELAALYSSDEDEINPYLSESDIENKENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANAHVHKEPNLRVKSIKDCVIILKGDKKVLKSFPEGEWNPHAAKIKDISGNES---------TEQDIIDAIGDGKVNVK------EFGKSI-----RRRY--GAENKKLMFAIVKKL----------------------------CRKVDNEHMELKKEQV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 732
34 -9.6904u7a_A mol:protein length:826 Ribosome biogenesis protein ERB1  ali model follow..  13  7.VLFQGPGMMAKNNKTTEAKMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEK--------ESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKLQTIVDPNIYSKYADGSDRIIKPEINPVYDSDDSDAETQNTIGNIPLSA----HIGYD-------------------------------INGKRIMRPAKGSALDQLLDSITGLLDKNSGSSLNLTKEELELIS--------------KIQRNEQTDD.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 248
35 -9.6404uer_c mol:protein length:812 EIF3C  ali model follow..  9  1MSEYDVASSSSEEDLLSSSEEDLLSSSSSESELDQESESESEADVDSDDSDAKPYGPDWFKKSEFRKQGGGSNKFLKSSNYDSSDEESDEEDGDEMQDVYNKISQAENSDDWLTISNEFDLISRLLVRAQQQNWGQVEDAVNNTQQADLKNKAVARAYNTTKQRVKKVSRENEDSMAKFRNDPESFDKEPTADLDISANGFTISSSQGNDQAVQEDFFTRLQTIIDSRGKKTVNQQSTLEELLTVAEKPYEFIMAYLTLIPSRFDASANLSYQPIDQWKSSFN-----DISKLLSILDQTIDTYQSFVERLDDEFMKSLLNIDPHSSDYLIRLRDEQSIYNILRTQLYFEATLKDEHDLERALTRPFVKRLDHIYYKSENLIKIMETAAWNIIPAQFKSKFTSKDQLDSADYVDNLIDGL---TILSKQNNIAVQKRAILYNITAKDMLLTSQVQTNINQFDSSLQIL-------NRVVVQLGLSAFKLCLIEECHQILNDLLSSSHLREILGQQSLHRISLNSSNNASADENLDLIDVVFLTCSLLIEIPRMTAFYSGIKVKRIPYSPKSIRRSLEHYDKLSFQGPPETLRDYVLFAAKSMQKGNWRDSVKYLREI...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 697
36 -9.5205mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  20  69.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VKVGDTVKVISGGEKGKIGEISKIHNSTVII------KDLNFKTKHVKSKEEGEQGQIIKIEAAIH--VMLILKEQEVADRVDVRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAV.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 189
37 -9.3606g18_u mol:protein length:804 Pre-rRNA-processing protein TSR1 homolog  ali model follow..  13  330ATDAVDDMEEGLKVLMKADPGRQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGGSQSGGEGDEYEYDDMEHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIRFQKYRGLK-WDPKENLPQDYARIFQFQNTNTRKSIFKEVEEKEVEGAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFS-----LLPHEQKMSVLN-------------MVVRRDPNTEPV-------KAKEELIFHC--------------------------------------------------------------GF--RRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPIT-------FPPASVLLFKQKSNGMATGHLMSVDPDRMVIKVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPTKWGRRGHILGTHGHMKCSFDGKLKSQDTVLMN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 768
38 -9.3605z56_v mol:protein length:464 Splicing factor 3A subunit 2  ali model follow..  12  4...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYKNHLGSYETLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKMEKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPA............................................................................................................. 333
39 -9.3002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  23  10...................................................................................................................................................................................................................................................................................................................................................................................................................................FEPGEMVRVNDGPFADFNGVVEEVDYEKLKVSVSIFGRATPVELDFSQVEKA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 63
40 -9.2605mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  18  70.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VKVGDTVKVISGGEKGKIGEISKIHNSTVII------KDLNLKTKHVKSKEEGEQGIKIEAAIHSSNVMLYSKEQVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAV.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 190
41 -9.1903j7y_V mol:protein length:216 uL24  ali model follow..  13  56.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LFCGDTVEILEGKDAGKQGKVVQVQRNWVVV------GGLNTHYRYIGKTMDYRGTMIPSRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWIDGPKDTSVEDALERT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 186
42 -9.1806elz_I mol:protein length:663 Nucleolar complex-associated protein 3  ali model follow..  9  1MAKRNRSQFRIQERTAKKRKHEDSLLEGNVFQNAPEDMDENTIYSAKGSSWDEEEQDYEMVPRKNRSDTSNLVEGLPIKVNGKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQEAEAKEDEPDTEEKILQLKEDIADLVTKVMEEPEENTAALGRLCKMVESKNPNTCKFSMLALVP--VFK-RIRPLTETEKKEKVSKEVSKLRNFEQ---LVYNYKN-------YVGR-----LQSLSKTPSNAAPIQVSLGILATQAAKELISTASH----------NFRTDIFTLLLRRICKPRISTDPTSIQIIQTF........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 298
43 -9.1001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  12  38.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED.................. 77
44 -9.0603h8z_A mol:protein length:128 Fragile X mental retardation syndrome-related protein 2  ali model follow..  16  1..................................................................................................................................................................................................................................................................................................................................................................................................................................AYFQGLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSER-QIPFGDVRKEITEGDEVEVYSRANEQELARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPNPLATKGSF......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 128
45 -9.0305oql_B mol:protein length:907 Utp2  ali model follow..  8  312.AQPAEPVKTEEEKAAEAAKKLQELEEKRLKRMRGEPVSDDEESESEEDKGKKDKKDNAVDPLNAEESEDEFGLGKGVKYKPTATELGLDDEDDFLIDDDLVASGSELEFDSEDFSDVESDEEEGSSESKEDEEDDEFIKGILTEAEQQEAVFQQPKQGDDENGIPYTFPCPQSHEEMLNVVKGIEVTKLPTVVQRIRALHHPKDAKNKERLGNFSQV-------HIAYLGDRFQPHWFPTLEQLSRHVHSLAKTFPIEVAKAYRMRIQEMEEHRPLAPTVGDLVILTAIGTTFPTSDHFHQV---CTPAM........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 615
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.