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Query: 5opt_V mol:protein length:144 40S ribosomal protein S14, putative, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MSKKQEVKFYGSSAAKDELVYGVVHIYASFNDTFVHVTDMSGRETFCKITGGMKVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRATGGVGTRSPGPGAQAALRALARAGMKIGRIEDVTPIPTDSTRRKGSRRGRRLLast
1 -92.1005opt_V mol:protein length:144 40S ribosomal protein S14, putative  ali model  100  1MSKKQEVKFYGSSAAKDELVYGVVHIYASFNDTFVHVTDMSGRETFCKITGGMKVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRATGGVGTRSPGPGAQAALRALARAGMKIGRIEDVTPIPTDSTRRKGSRRGRRL 144
2 -91.0006az1_O mol:protein length:144 ribosomal protein S11  ali model follow..  90  1MSKKQEVKAYGPNVKKGDLVYGVVHIYASFNDTFVHVTDTSGRETYVKVTGGMKVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRAVGGVRTKSPGPGAQAALRALARAGMKIGRIEDVTPIPTDSTRRKGSRRGRRL 144
3 -82.2005jpq_w mol:protein length:137 uS11  ali model follow..  71  1.......MSNVVQARDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRRGRRL 137
4 -82.1004d5l_O mol:protein length:151 40S RIBOSOMAL PROTEIN US11  ali model follow..  74  9.KKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151
5 -81.7005xxu_O mol:protein length:156 Ribosomal protein uS11  ali model follow..  70  14.EGEAQGSGLGPATRDGEIVFGVAHIYASFNDTFIHVTDLSGRETLVRVTGGMKVKADRDESSPYAAMMAAADVAARCKELGISAVHVKVRAAGGTRSKTPGPGAQSALRALARSGLRIGRIEDVTPIPTDSTRRKSGRRGRRL 156
6 -81.6003j80_O mol:protein length:137 uS11  ali model follow..  70  1.......MANVVQAKDNSQVFGVARIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRRGRRL 137
7 -81.3005oql_t mol:protein length:150 40S ribosomal protein S14-like protein  ali model follow..  75  8.RPAQENISLGPQVREGELVFGVARIFASFNDTFVHVTDLSGRETICRVTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKIRATGGNGTKTPGPGAQSALRALARSGMKIGRIEDVTPTPSDSTRRKGGRRGRRL 150
8 -81.0006GSN Entity 38(prereleased)  ali follow..  74  1.................SQVFGVARIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRRGRRL 127
9 -80.1003j7a_P mol:protein length:151 40S ribosomal protein uS11  ali model follow..  69  9.PQPETAIVSGPQPKEGELVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMMAAQDVAARLKELGVTAIHIKLRASGGTKSKTPGPGAQSALRALARSGLKIGRIEDVTPIPTDSTRKKSGRRGRRL 151
10 -79.7004cvn_E mol:protein length:137 30S RIBOSOMAL PROTEIN S11  ali model follow..  55  1.......MSEEQVNIKKKEKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRRV 137
11 -77.9005xyi_O mol:protein length:159 Ribosomal protein S14  ali model follow..  61  17.TTGKKDVQLGPVKRDGEIVMGVAHIYASKNDTFVHVTDLSGSETLARCTGGIAVRAQRDEATPYAAMLAAQAVAARLKELGVDGVHIKFRGEGGSSRRLPAQGAQSALRALARAGVKIGRIEDVTPLPHDSTRRKGGRRGRRL 159
12 -76.1003j0l_K mol:protein length:140 Ribosomal protein S14  ali model follow..  70  1....EVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREGGRRGRRL 140
13 -62.7003j9y_k mol:protein length:129 30S ribosomal protein S11  ali model follow..  36  2....AKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGS-RKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPG--------PGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRR.... 128
14 -62.6001fjg_K mol:protein length:129 30S RIBOSOMAL PROTEIN S11  ali model follow..  31  4........KPSKKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGS-RKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTG--------AGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKA.. 128
15 -62.5005nd8_k mol:protein length:129 30S ribosomal protein S11  ali model follow..  34  1MARKQVSRK---RRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGS-KKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPG--------PGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRR.... 128
16 -62.1005mmj_k mol:protein length:138 30S ribosomal protein S11, chloroplastic  ali model follow..  31  8.IGSRRNGRISSRKSARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGT-KRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPG--------LGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRR.... 137
17 -60.6006ha1_k mol:protein length:131 30S ribosomal protein S11  ali model follow..  31  2..AAARKSNTRKRRVKKNIESGIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGS-RKSTPFAAQMAAETAAKGSIEHGLKTLEVTVKGPG--------SGREAAIRALQAAGLEVTAIRDVTPVPHNGCRPPKRRR.... 130
18 -60.6005v93_k mol:protein length:139 30S ribosomal protein S11  ali model follow..  29  9.ATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGS-RKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPG--------SGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRR.... 138
19 -59.5005o5j_K mol:protein length:138 30S ribosomal protein S11  ali model follow..  30  8.GTAAKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHVGFKGS-RKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPG--------SGRETAIRSLQAAGLEVGTISDVTPQPHNGCRPPKRRR.... 137
20 -53.5005aj3_K mol:protein length:196 MITORIBOSOMAL PROTEIN US11M, MRPS11  ali model follow..  23  66.PPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGFRNA-KKGTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLG--------PGRLSAIKGLTMGGLEVISITDNTPIPHNGCRPRKARR.... 195
21 -52.4003jd5_K mol:protein length:197 28S ribosomal protein S11, mitochondrial  ali model follow..  24  67.PPIPGQESSLRWAGKKFEEIPIAHIKASYNNTQIHVVSAAHQPLARASCGTEGFRNAKK-GTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLG--------PGRLSAIKGLTMGGLEVISITDNTPIPHNGCRPRKARR.... 196
22 -11.2005v7q_O mol:protein length:122 50S ribosomal protein L18  ali model follow..  9  11.ISRLRRHTRLRKKLSGTAERPRLVVHRSARHIHVQLVNDLNGTTVAAASSIEADVRGVPGDKKARSVRVGQLIAERAKAAGIDTV.......................................................... 95
23 -10.4004v4i_M mol:protein length:112 50S ribosomal protein L18  ali model follow..  8  1MARLTAYERRKFRVRNRRTGRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSL---ALKLKGNKTEVARQVGRALAEKALALGIKQVAF........................................................ 87
24 -9.8205ool_P mol:protein length:180 39S ribosomal protein L18, mitochondrial  ali model follow..  12  53.PRNLELLSVARKVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTRNVACESIGRVLAQRCLEAGINFMVYQPTP--------------------EAASDSMKRLQSA--MTEGGVVLREPQR.... 177
25 -9.7202j28_O mol:protein length:117 50S RIBOSOMAL PROTEIN L18  ali model follow..  17  1MDKKSARIRRATRARRKELGATRLVVHRTPRHIYAQVIANGSEVLVAASTVEKAIAEQLKYTGNKAAAAVGKAVAERALEKGIKDVSF........................................................ 92
26 -9.6204ce4_S mol:protein length:180 MRPL18  ali model follow..  13  53.PRNLELLAVARKVWPSREFWHRLRVIRTQHHIEALVEHRNGQVVVSASTREWAIKKHLYSTRNVACESVGRVLAERCLEAGINFMVYHPTP--------------------EAASDSIKRLQHA--MTEGGVVLREPRR.... 177
27 -9.6105o60_P mol:protein length:127 50S ribosomal protein L18  ali model follow..  12  16.NARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAHSVRVGQLIAERAKAAGVETVVFDRGGYTYGGR-------AALADAAREAGLKF......................... 127
28 -9.5601ovy_A mol:protein length:120 50S Ribosomal Protein L18  ali model follow..  14  8NAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGR-------KALADAAREAGLEF......................... 120
29 -9.5403j3v_O mol:protein length:120 50S ribosomal protein L18  ali model follow..  16  6.SKNAARLKRHARVRAKTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLYHGR-------KALADAAREAGLKF......................... 120
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.