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Query: 5oql_B mol:protein length:907 Utp2, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAGSQLKRLKASLREQGLIGPQKSKKQKRQNANDPKAQEKRLQKAEALKSIREQFNPFQFKTNARGPKFEVTTNKPTDKNGMVIKGRPELSRARSEEKRRQTILVEMQRRNKVGGIIDRRFGEGDPNLSVEDKMIERYTQEALRAHKKKGMFDLEDDDEARLTHMGKPLFDDDEAPKEDFSEDDLPSGDESDTTRAERRALKRQRLAEAMEGLEDEAGQPERKKTRKEIYEEIIAKSKMYKAERQAIKEENNELRMEVDQELPEVQQLLYQIKKPETEKKEAPVPIIAGKEKTVVDKEYDIRLKQLAMDKRAQPAEPVKTEEEKAAEAAKKLQELEEKRLKRMRGEPVSDDEESESEEDKGKKDKKDNAVDPLNAEESEDEFGLGKGVKYKPTATELGLDDEDDFLIDDDLVASGSELEFDSEDFSDVESDEEEGSSESKEDEEDDEFIKGILTEAEQQEAVFQQPKQGDDENGIPYTFPCPQSHEEMLNVVKGIEVTKLPTVVQRIRALHHPKLDAKNKERLGNFSQVLIHHIAYLGDRFQPHWFPTLEQLSRHVHSLAKTFPIEVAKAYRMRIQEMEEHRPLAPTVGDLVILTAIGTTFPTSDHFHQVCTPAMLAIARYLGQKVPAALSDFAVGIYLSILALQYQDFAKRYVPEMMNFLLNTLCALAPERAKSKLGNFPVHEPPAGIRIKDATNTPIRQLNCGDCLRKDELSPAETSSLQIAILSTATAILKSAADTWHKLPAFIESFQPALSVAQHLLTKPNASHLPSSLTSKLNDLASHLSRLLQLSRLSRRPLELHHHRPLAIKTYIPKFEDDFDPDKHYDPNRERAELAKLKAEHKRERKGALRELRKDAQFIRREQLRIKKEKDEAYEKKFKRIIAEIQNEEGRAANEYAREKAARKRKRLast
1 -191.0005oql_B mol:protein length:907 Utp2  ali model  100  1MAGSQLKRLKASLREQGLIGPQKSKKQKRQNANDPKAQEKRLQKAEALKSIREQFNPFQFKTNARGPKFEVTTNKPTDKNGMVIKGRPELSRARSEEKRRQTILVEMQRRNKVGGIIDRRFGEGDPNLSVEDKMIERYTQEALRAHKKKGMFDLEDDDEARLTHMGKPLFDDDEAPKEDFSEDDLPSGDESDTTRAERRALKRQRLAEAMEGLEDEAGQPERKKTRKEIYEEIIAKSKMYKAERQAIKEENNELRMEVDQELPEVQQLLYQIKKPETEKKEAPVPIIAGKEKTVVDKEYDIRLKQLAMDKRAQPAEPVKTEEEKAAEAAKKLQELEEKRLKRMRGEPVSDDEESESEEDKGKKDKKDNAVDPLNAEESEDEFGLGKGVKYKPTATELGLDDEDDFLIDDDLVASGSELEFDSEDFSDVESDEEEGSSESKEDEEDDEFIKGILTEAEQQEAVFQQPKQGDDENGIPYTFPCPQSHEEMLNVVKGIEVTKLPTVVQRIRALHHPKLDAKNKERLGNFSQVLIHHIAYLGDRFQPHWFPTLEQLSRHVHSLAKTFPIEVAKAYRMRIQEMEEHRPLAPTVGDLVILTAIGTTFPTSDHFHQVCTPAMLAIARYLGQKVPAALSDFAVGIYLSILALQYQDFAKRYVPEMMNFLLNTLCALAPERAKSKLGNFPVHEPPAGIRIKDATNTPIRQLNCGDCLRKDELSPAETSSLQIAILSTATAILKSAADTWHKLPAFIESFQPALSVAQHLLTKPNASHLPSSLTSKLNDLASHLSRLLQLSRLSRRPLELHHHRPLAIKTYIPKFEDDFDPDKHYDPNRERAELAKLKAEHKRERKGALRELRKDAQFIRREQLRIKKEKDEAYEKKFKRIIAEIQNEEGRAANEYAREKAARKRKR 907
2 -12.4005fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  8  407........................................................................................................................................................................................................................DEAEKRMDKKSGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTITEKDIIEAIGDGKVN-IKEFGKFIRR------GAENKKLMFAIVKKLCR....................................................................................................................................................................................................................................................................................................................................................................................... 723
3 -12.3005xjc_x mol:protein length:703 Protein CASC3  ali model follow..  9  1.........................................................................................................................................................................................................................................MADRRRQRASQDTEDEE---------------------------SGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPA-EHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIAL................................................................................................................................................................................................................................................................................................................................................................................................................................ 239
4 -12.1005oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  9  302.........EEGTMDPLADVAPDGGGRAKRGNLRRKTRQLKVLDENAKKLRFEEFYPWVMEDFDGYNTW--VGSYEAGNSDS-SVEDDGSFTMIPADKTARNKYATXXXXXXXXXXXXLTIDEAEKRMDKKSGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAP--------------IIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFG--------------------------------------------------------------------EKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTI--------TEKDIIEAIGDGKVN-IKEFGKFIRR------GAENKKLMFAIVKKLCR....................................................................................................................................................................................................................................................................................................................................................................................... 735
5 -11.9004v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  7  402........................................................................................................................................................................................................................DEAEKRMDKKSGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLGLRDEEAPSGNEEDELFGEKKIDEDGEKIKKALQKTELAALYSSDEDEINPYLSESDIENKENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANAHVHKEPNLRVKSIKDCVIILKGDKKVLKSFPEGEWNPHAAKIKDISGNESNAVSAPIKKEKPLESIVVQEKETPAPLITEQDIIDAIGDGKVN-VKEFGKSIRR------GAENKKLMFAIVKKLCR....................................................................................................................................................................................................................................................................................................................................................................................... 718
6 -11.6006g90_J mol:protein length:620 U1 small nuclear ribonucleoprotein component SNU71  ali model follow..  7  275..............................................................................................................................................................................................................................SDALDQLCKDIIERTKVVSIEKEKKMKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALE-----KRKEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLHLANDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKSENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPTKPSERSAAEDRLPFTADELNIRLTNLKESRYVDELVREFLGVYEDELVEYILENI-----RVNQSKQALLNELRETFDE............................................................................................................................................................................................................................................................................................................................................................. 601
7 -11.3004u7a_A mol:protein length:826 Ribosome biogenesis protein ERB1  ali model follow..  12  1................................................................................................................................................................................................................................................................................................ASAALEVLFQGPGMMAKNNKTTEAKMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKLQTIVDPNIYSKYADGSDRIIKPEINPVYDSDDSDAETQNTIGNIPLS-----DEMPHIGYDIN-PAKGSALDQLLDSIELPEGWTGLLDKNSGSSLNLTKEELELISKI............................................................................................................................................................................................................................................................................................................................................................................................. 240
8 -11.2005mqf_S mol:protein length:2752 Serine/arginine repetitive matrix protein 2  ali model follow..  9  1M-GIGLP----TPRGSGTNG-QRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNP-DILDHERKRRVEL--RCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDVNPGGKEETPGQRPAVTETHQLAELN--------EKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKN................................................................................................................................................................................................................................................................................................................................................................................................................................................. 461
9 -10.9006ez8_A mol:protein length:3138 Huntingtin  ali model follow..  7  392.................................................................................................................................................................TAVGGIGQLTAAKEESGGRSRSGSIVELIAGGGSSCSPVLSRKQKGKVLLGEEEALEDDSESRSDVSSSALTASVKDEISGELAASSGVSTPGSAGHDIITEQPRSQHTLQADSVDLASCDLTSSATDGDEEDILSHSSSQVSAVPSDPAMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGTDNQYLGLQIGQPQDEDEEATGILPDEASEAFRNSSMALQQAHLLKNMSHCRQPSDSSVDKFVLRDEATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVKALALSCVGAAVAL-TEYPEEQYVSDILNYIDHGDPQVRGATAILCGTLICSILSRSRFHVGDTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRNCVMSLCS--SSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHELITSTT--ALTFGCCEALCLLSTAFPVCIWSLSAHQDALILAGNL-PALGDRALVPMVEQLFSHLLKVINICAHVLDDSLSPIRRKGKEKEPGEQASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGS--YHLPSYLRLHDVLKATHANYKVTLDLQNSTEK... 1258
10 -10.8005z10_A mol:protein length:2547 Piezo-type mechanosensitive ion channel component 1  ali model follow..  6 1307..................................................................................................................................................................................................................................ADLKATALQASRGFALYNAANLKSINFHRQIEEKSLAQLKRQMKRIRAKQEKYRQSQASRGQLQSKDPQDPSQEPGPDSPGGSSPPRRQWWRPWLDHATVIHSGDYFLFESDSEEEEEALPEDPRPAAQSAFQMAYQAWVTNAQTVLRQRRERARQERAEQLASGGDLNPDVEPVDVPEDEMAGRSHMMQRVLSTMQFLWVLGQATVDGLTRWLRAFTKHHRTMSDVLCAERYLLTQELLRVGEVRRGVLDQLYVGEDEATLSGPVETRDGPSTASSGLGAEE-PLSSMTDDTSSPLSTGYNTRSGSEEIVTDAGDLQAGTSLHGSQELLANARTRMRTASELLLDRRLHIPELEEAERFEAQQGRTLRLLRAGYQCVAAHSELLCYFIIILNHMVTASAASLVLPVLVFLW----MLTIPRPSKRFWMTAIVFTEVMVVT----------KYLFQFGFFPWNSYVVLRRYENKPYFPPRILGLEKTDSYIKYDLVQLMALFFHRSQLLCYGLWDH---------------EEDRYPKDHCRSSVKDREAKEEPEAKLESQSETGTGHPKEPVLAGTPRDHIQGKGSIRSKDVIQDPPEDLKPRHTRHISIRFRRRKETPGPKGTAVMETEHEEGEGKETTERKRPRHTQEKSKFRERMKAAGRRLQSFCVSLAQS..... 1953
11 -10.8006fhs_H mol:protein length:491 les2  ali model follow..  11  5.....................................................................................................................PRRHAAQRASQAITDLADRDRESDHSHGPISSRMSSFNSSSRSRLPGKGIASVSRSEAGGASDPEHIHLTVKLPSSKLRQATSSSGIKKAGSVGSSSSSSGGGKAAVKRAR------KRSRVLESSEEEEEENEVEVLGDEDEEEEEEEDEIEVREGEGYDEDEEDVEDEDEEMQDLGEEDADGEDDEMDVDAEGEEDADGDVNMDAGVVGARATTVRAVPPAIKVTKPPKESPSNGKAATASKANDNAVPVKRPAPDSDDESLSSLESEPEEEVNVAGGEDAEGEDDDAEGEVDAEGEEEEEEEEIEVADEDAEGEDVEQDEDEDEEEEDDDDEMISRAQTPDMSRLTARQRARLG................................................................................................................................................................................................................................................................................................................................................................................................................................................. 357
12 -10.4004aco_A mol:protein length:956 CENTROMERE DNA-BINDING PROTEIN COMPLEX CBF3 SUBUNIT A  ali model follow..  6  465...................................................................................................RERFLSNLPWIYKF--FPNHDIFQDPIFGNSDFQSYFNDKTIHSKGSPILSFDILPGFNKIYKNKTNFYSLLIERPSQLTFASSHNPDTHPTQKQESEGPLQMSQLDTTQLNELLKQQSFEYVQFQTLSNFQILLSVFNKIFEKLEMKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNEDGPNTSRRTKRPKQIRLLSIADSSDESSTESNVFKKDGESIEDGAYGENEDENDSEMQEQLKSMINELINSKISTFLRDQMDQFELKINALLDKILEEKVTRIIEQKLGSHTGKFSTLKRPQLYMTEEHNVGFDMEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQEAKSYTDEQEFMLDKSIDSIEGIILEWFTPN----VHSMNKSGNKSWRANCEALYKE--KSIVEFYIYLVNHESLDRYKAVDICFSRLAKFLRKWRHDHQNSFDGLLVYLSN....................................................................................................................................................................................................................................................................................................................................... 956
13 -10.4006e11_d mol:protein length:993 Translocon component PTEX150  ali model follow..  11  652..........................................................................................................................EDEDDDDDDDLDEDEFSVKDIKKLIEEGILDYEDLTENELRKLAKPDDNFYELSPYASDEKDLSLNETSTNEQLKNFLGQNGTYHMSYDSKSIDYAKQKKSEKKEDQQEDDDGFYDAYKQIKNSYDGIPNNFNHEAPQLIGN-----NYVFTSIYDTKENLIKFLKKNSEYDLYDDDDKEGGNFKSPLYDKYGGKLQKFKRQRAFNILKQWRAKEKKLKEKKKKEEMEENKEFDFSKNYNFSSKNDGGVTMFSKDQLEDMVKNFGGKPSAHVTDSFSRKENPFVPTNTKNNSNDDDDMDNGYVTFDGKNKVSENDDDEKGNNNDDENDNDDSNDEEELDEEEDDN........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 993
14 -10.4006emk_I mol:protein length:1176 Target of rapamycin complex 2 subunit AVO1  ali model follow..  7  1M--TVLNELRAQLRVC-----PEKDQMKR-------------------------IKPYVDEFNTEQCLDSSIRENSDGVSLLPELESPPVSKDASLGKMRIMRENEGQKGKANQNLIGAEKTERDEEETRNLQDKSAKNTLIVEENGTLRYNPLNSSASNSLLNDDDHTSGKHHKTSSKEDSYLNSSMEMQKKSSKRSSLPFVRIFKSRRDHSNTSGNKNVMNTTNTRAKSSTLHPPGARHNKKGSKFDMNFDFDENLEEEDDDDDDDEEGDDIHSQFFQLDDDFDAKGSGASPAHKGINGMSNNKNNTYTNNRNSISILDDRESSNGNIGSASRLKSHFPTSQKGKIFLTDNKNDGQKSDSLNANKGIHGDGSSASGNGSVSRDGLTETESNNISDMESYINEKDLDDLNFDTVTSNINKTVSDLGGHESTNDGTAVMNRDSKDSRSNSNEFNAQNRDRITPGSSYGKSLLGS................................................................................................................................................................................................................................................................................................................................................................................................................................................. 457
15 -10.0001yo8_A mol:protein length:634 thrombospondin-2  ali model follow..  5  254..........................................................................................................................................................VDIDGDDVFNERDNCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDN-ANQADHDRDGQGDACDPDDDNDGVPDDRDN------RLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRNTTQIDPNWVIRHQGKELVQTANSDPGIAVGFDEFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQVRTLWHDPRNIGWKDYTAYRWHLTHRPKTGYIRVLVHEGKQVMADSGPIYDQTYA-LGLFVFSQEMVYFSDLKECRD........................................................................................................................................................................................................................................................................................................................................................................................................... 624
16 -9.4705yfp_A mol:protein length:1336 Exocyst complex component SEC3  ali model follow..  9  127.PDSKLENKKKSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLEISEGFILTMSKKKERTVFIKSLITLYIQTFEGHVPELVSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSNSTLNEVNKRYELEQQQQQEEAELRRLEEQKRLQLQKENEMKRLEEERRIKQEERKRQMELEHQRQLEEEERKRQMELEAKKQMELKRQRQFEEEQRLKKERELLEIQRKQREQETAERLKKEEQEALAKKEEEEKSKRNKVDNESYTQEINGKVDNLLEDLNAVLAEETETTPTMQNGTYVPERSTARAHDQLKKPLNIAKVESLGGSDLNDSISLSDEIAGLNTSNLSGEDQDEKNDLSFEKGDEVRYSNNFEGEAPHVYHEVSIIQEEAPAVSQKLILPEENNESEALIESKEEIKTMENIDDEVLLEILTDINWSIEDDADSMIERIDL----RLAETEYLFNQNLLS---------LQKIGPNIRPYEDKVNDECHRI-----IPTLSLFLMEMSNFSNDIENVESQDNGLQVESANKKLLWNTLDELLKTVSLQLLECPIREKNLPWMENQLNLLLKAFQAIFYEKVTKIFLNRIVEEMQKKF.................................................................................................................................................................................................................................................. 817
17 -9.3505oql_c mol:protein length:785 Putative U3 small nucleolar ribonucleoprotein protein  ali model follow..  9  153..........................................................................................................................GEAQAVLEELKVNGEVEEEEGEDKVIEFGEDGFEVGSSDEEESEEEGNEEADTEDSDGEGASLGDENAMFDLEAEEDSGSEEDKSDVGEEVDGEVDGEKHSDLDGEEEGEEGEEDEEDEEDDDESAEDLVEDPHGLNDGFFSIDEFNKQTQMWEDQDMRAEPTAELDDDSEDIDWHADPFAVKPSKRGKKDDGDMDLDDEEDESDDEAPPVGKKALEKMLDKDEDDEGGNLEDDLADGMGMDLTANDIYYKDFFAPPRKKKKPGSSKKKRELELETKRPDDADVERAEQDVRRDLFDDLSEHEDSEDALSDASAGDPKSRKSAHERRQAKIAEQIRKLEAEATAADRPVNSLLGEDMEFDHVGKPVPVVTEEVSESIEELIKRRILA.............................................................................................................................................................................................................................................................................................................................................................................................................. 551
18 -9.1805iy6_S mol:protein length:517 General transcription factor IIF subunit 1  ali model follow..  12  136.......................................................................................................................................................................................................................................EAFPVHNWYNFTPLAR-EEAEEEWERRNKVLNHFSIMQQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKKAPLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASSALFMAKKKTPPKRERKPSGGSSRG................................................................................................................................................................................................................................................................................................................................................................................................................................................. 383
19 -9.0405oik_Z mol:protein length:1087 Transcription elongation factor SPT5  ali model follow..  8  2.......................................................................................................................................................................................................................................................................................................................SDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQ-FTDTPLQIKSVVAP---YVEAYKQTHVKQAIEGVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTIMIPRI.................................................................................................................................................................................................................................................................................................... 311
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.