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Query: 5oql_C mol:protein length:648 Utp3, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKKRKATRPAEPQGPKEIDPKDARLTVNNYMDVADSEDEYWYKKDRLDIDSDDEPRSKRLKRQDKEDAFLEQSDEEIFDDELSSEEEEEDDEDERRAPTKKDGKKGAALDDDDDAELLGLGKKKDDDEIRDEGWWGSSKKEYYNADAIETEQDALEEEKEARRLQAKKLAKMQEADFAFDEAEWLATKDEKTGGDEEVVTEVLKEVEVTSDMGPEERYNLLQARYPEFDYLVEEFRELRPLLETLQKEAEGKPAKSLPVVKAWVLGCYVAALASYFAILTSPTRDGDESKGIMNPSELRDHEVMQTLMECREAWLKVKSLRPAKGAVSAHGMLSPPEEGEEAGSDVDMLDDHAVQKPKKAKKLSKEEIKANKKKKEEEAKKAKAVEQSLAELTSLLQTTKKAAVKASVASKAMSTAATSGADSGMDDNRSDFGEEEELDARTAAEKAKRKKSLRFYTSQIVQKANKRQGAGRDAGGDMDIPYRERLKDRQARLNAEAERRGKRDSKFGADLGGDSSDDEDAKARQVRDDEDAYYNEVVQAAAKKRADKQARFEALAAARKGDRVVEEETIGPDGKRQITWQIQKNKGLTPNRKKEQRNPRVKKRKKYEEKQKKLRSVKAVYKGGEGPGGYQGELSGIKTNLVKSVKLLast
1 -174.0005oql_C mol:protein length:648 Utp3  ali model  100  1MAKKRKATRPAEPQGPKEIDPKDARLTVNNYMDVADSEDEYWYKKDRLDIDSDDEPRSKRLKRQDKEDAFLEQSDEEIFDDELSSEEEEEDDEDERRAPTKKDGKKGAALDDDDDAELLGLGKKKDDDEIRDEGWWGSSKKEYYNADAIETEQDALEEEKEARRLQAKKLAKMQEADFAFDEAEWLATKDEKTGGDEEVVTEVLKEVEVTSDMGPEERYNLLQARYPEFDYLVEEFRELRPLLETLQKEAEGKPAKSLPVVKAWVLGCYVAALASYFAILTSPTRDGDESKGIMNPSELRDHEVMQTLMECREAWLKVKSLRPAKGAVSAHGMLSPPEEGEEAGSDVDMLDDHAVQKPKKAKKLSKEEIKANKKKKEEEAKKAKAVEQSLAELTSLLQTTKKAAVKASVASKAMSTAATSGADSGMDDNRSDFGEEEELDARTAAEKAKRKKSLRFYTSQIVQKANKRQGAGRDAGGDMDIPYRERLKDRQARLNAEAERRGKRDSKFGADLGGDSSDDEDAKARQVRDDEDAYYNEVVQAAAKKRADKQARFEALAAARKGDRVVEEETIGPDGKRQITWQIQKNKGLTPNRKKEQRNPRVKKRKKYEEKQKKLRSVKAVYKGGEGPGGYQGELSGIKTNLVKSVKL 648
2 -12.4005fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  12  407...................................DEAEKRMDKKSG---KAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERLAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSPAPTITEKDIIEAIGDGKVNIKEFGKFIRRKYKLMFAIVKKLCRKVGNDHMELK.................................................................................................................................................................................................................................................................................................................................................................................................. 733
3 -12.0005oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  12  419...................................DEAEKRMDKKSG---KAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERLAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCITEKDIIEAIGDGKVNIKEFGKFIRRKYKLMFAIVKKLCRKVGNDHMELK.................................................................................................................................................................................................................................................................................................................................................................................................. 745
4 -11.8005xjc_x mol:protein length:703 Protein CASC3  ali model follow..  11  1MARRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGG-AVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKF-----------------------------------REDEQA----KSRQELIAL--DIRS.......................................................................................................................................................................................................................................................................................................................................................................................................................... 246
5 -11.7004v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  12  402...................................DEAEKRMDKKSGE--KAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFGEKKIDEDGEKLAALYSSDEDEINPYLSESDIENKENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANAHVHKEPNLRVKSIKDCITEQDIIDAIGDGKVNVKEFGKSIRRRYKLMFAIVKKLCRKVDNEHMELKKEQVY............................................................................................................................................................................................................................................................................................................................................................................................. 733
6 -11.5004u7a_A mol:protein length:826 Ribosome biogenesis protein ERB1  ali model follow..  10  5LEVLFQGPGMMAKNNKTTEAKMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKLQTIVDPNIYSKYADGSDRIIKPEINPVYDSDDSDAETQNIPLSAYDEMPHIGYDINGKRIMRPAKGSALDQLLDSIELPEGWTGLLDKNSGSSLNLTKEE----LELISKIQR.......................................................................................................................................................................................................................................................................................................................................................................................................................... 242
7 -11.5005c0w_L mol:protein length:184 Exosome complex protein LRP1  ali model follow..  9  2...............................................................................................................................................................................................................................EDIEKIKPYVRSFSKALDELKPEIEKLTSKSLDEQLKLELINRYAYVLSSLMFANMKVLGVKD--------------MSPILGELKRVKSYMDKAKQYDNRITKSNEKSQAEQEKAKNIISNVLDGNKNQFEPSISRSNFQGKHTKFENDELAESTTTKIIDSTDHIRKASSKKSKRLDKVGKKKGGKK............................................................................................................................................................................................................................................ 184
8 -9.7206eu0_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7  ali model follow..  11  72TGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIG---GINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDY--NAEKYFNNGDDDDYGDEEDPNEEA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 249
9 -8.8406cnb_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7  ali model follow..  15  72XXXXXXXXXXXXXXXXXXRKPNIILDEDDTNDGIERYSDKYLKKRKIGVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDD----NAEKYFNNGDDDDYGDEEDPNEEA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 249
10 -7.7705z10_A mol:protein length:2547 Piezo-type mechanosensitive ion channel component 1  ali model follow..  9 1337..IEEKSLAQLKRQMKRIRAKQEKYRQSQASRGQLQSKDPQDPSQEPGPDSPGGSSPPRRQWWRPWLDHATVIHSGDYFLFESDSEEEEEALPEDPRPAAQSAFQMAYQAWVTNAQTVLRQRRERARQERAEQLASGGDLNPDVEPVDVPEDEMAGRSHSDVLCAERYLLTQELLRVGEVRRGVLDQLYVGEDEATLSGPVETRDGPSTASSGLDLQAGTSLHGSQELLANARTRMRTASELLLDRRLHIPELEEAERFEAQQGRTLRLLSELLCYFIIILNHMVTASAASLVLPAMLTIPRPVTKYLFQFRSQLLCYGLWDHEEDRYPKDHCRSSVKDREAKEEPEAKLESQSETGTGHPKEPVLAGTPRDHIQGKGSIRSKDVIQDPPEDLKPRHTRHISIRFRRRKETPGPKGTAVMETEHEEGEGKETTERKRPRHTQEKSKFRERMKAAGRRLQSFCVSLAQS.................................................................................................................................................................................... 1953
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.