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Query: 5t2a_X mol:protein length:143 uL24, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVSIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKAILERKDRSSKSDKGKGKISAADKAMQQMDLast
1 -81.8005t2a_X mol:protein length:143 uL24  ali model  100  1MVSIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKAILERKDRSSKSDKGKGKISAADKAMQQMD 143
2 -80.9003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  97  1MASIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKSILERKDRSSKSDKGKGKISAADKAMQQMD 143
3 -74.6005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  62  3FSSQVSSSRRKSRKAHFSAPSSVRRKIMTAPLCKELRKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGETVTIGIHPSKVVITKAKLDKDRKALLERKSRA----TTKGKYTEKDVAMSQVD 141
4 -73.7003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  57  3FNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQ.. 144
5 -72.4002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  54  8....VSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE................... 127
6 -72.2005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  37  8....VSSQARKVRKSYFNAKKDAKHVAMSAPLSKELQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQAVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGHKKQ........ 138
7 -71.7003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  52  3FNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN................... 126
8 -70.7005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  92  1......GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRKAILERK........................ 113
9 -55.6001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  33  1....MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSA................... 120
10 -22.2001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  20  1...............................MPRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKQRELALHASKVALVDPETGKATR.............................. 93
11 -19.3005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  15  28....SPTTLQVKTEGHSPCLIVMRIKRWERKDCKP-NSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKH-IKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRK................... 157
12 -18.7004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  33  1............................................MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKH-LETEAAIHVSNVQLLDPKTNEPTR.............................. 80
13 -18.6005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  38  1............................................MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTATQEAPIHVSNVMVV....................................... 74
14 -18.6005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  38  1............................................MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTATQEAPIHVSNVMVV....................................... 74
15 -18.2003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  30  1............................................MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKNQEAPIHVSNVMPLDPKTGEVTR.............................. 80
16 -18.2004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  28  3..........................................VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKA-IEKEAPLHASKVRPICPACGKPTR.............................. 84
17 -17.7003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  31  2...........................................AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPEKEAAIQVSNVAIFNAATGKADR.............................. 82
18 -16.3004ce4_Y mol:protein length:216 MRPL24  ali model follow..  10  3LSALLALASKVTLPPNYRSLSDKRKNPPGTRRRRVPVEPISDEDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRY-IPSEAPLLHNQVKLVDPTDRKPTD.............................. 132
19 -16.2005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  18  56................................DCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKH-IKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRK................... 158
20 -15.8003j7y_V mol:protein length:216 uL24  ali model follow..  12  42................................RPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRY-IPSEAPLLHRQVKLVDPMDRKPTE.............................. 132
21 -15.6003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  14  27.......LPHSEKFIKKSTPEFMKSDLKEVDEKTSFKS---EKEWKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTV-ITIPVSILGKDLRLV....................................... 134
22 -11.7002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  20  2........................................SSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPK............................................................... 41
23 -11.5005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  15  54.........................................LEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMD............................................................... 92
24 -11.3002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  20  7...........................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV------SIFGRATPVELDFSQV.......................................... 60
25 -11.2002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  26  12.................................QELRKYF-------KMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHE.......................................................... 56
26 -11.1004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  20  85..........................................IIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENA----AVPIPITLPVEGVKIVSKHKD.................................. 147
27 -11.1005oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  14  37......................VRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF--RSFAFLHCKKLVENGG----FVCKTRHLVLA....................................... 113
28 -11.0002ckk_A mol:protein length:127 KIN17  ali model follow..  15  66.........................................LETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIV............................................................... 104
29 -10.9004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  23  1..............................................FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLN............................................................... 34
30 -10.8003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  26  88..........................................AVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ............................................................... 125
31 -10.8002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  12  6...........................................EVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKV------SIFGRETPVELTFGQV.......................................... 59
32 -10.7001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  16  167.................GKPVPLKEEEVQN-ILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV------SIFGRMTPVELDFDQV.......................................... 245
33 -10.6006duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  20  4...........................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV------SIFGRATPVELDFSQV.......................................... 57
34 -10.5001nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  24  2...........................................QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV------TIFGRETPVELDFSQV.......................................... 55
35 -9.9702e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  19  21.................................................GQTVRISQGPYKGYIGVVKDATESTARVELH............................................................... 51
36 -9.8204ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  13  1..............................................LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLK---------------------IVPRLDYGKFDEIDPTTQQRKSRRPTFAHRAPPQLFNPTMAL 76
37 -9.7305xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  19  21.................................................NKTVKIRQGGYKGKIGIVKEANGDRFRVELH............................................................... 51
38 -9.5702lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  18  120...........................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKV------TIFGRETPVVLHVSEV.......................................... 173
39 -9.3405ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  20  127...........................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS-----SIFGRATPVELDFSQV.......................................... 180
40 -9.0602xhc_A mol:protein length:352 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  18  296...........................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN--------GRETPVVLHVSEV.......................................... 349
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.