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Query: 5t5h_Z mol:protein length:113 60S ribosomal protein L26, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRKAILERKLast
1 -74.7005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model  100  1GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRKAILERK 113
2 -72.3003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  57  9SSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRK 121
3 -70.7005t2a_X mol:protein length:143 uL24  ali model follow..  92  7GSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKAILERK 119
4 -70.6002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  56  10SDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRK 122
5 -70.4003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  89  7GSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKSILERK 119
6 -70.4005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  66  9SSRRKSRKAHFSAPSSVRRKIMTAPLCKELRKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGETVTIGIHPSKVVITKAKLDKDRKALLERK 121
7 -68.5003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  66  9SDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERK 122
8 -67.5005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  42  10SQARKVRKSYFNAKKDAKHVAMSAPLSKELQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQAVSFPVHPSNVVITKLKMDKARKNLIELR 122
9 -53.0001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  35  3KQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKR...... 109
10 -21.9001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  19  1.........................MPRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKQRELALHASKVALVDPETGKATR...... 93
11 -18.9005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  15  30TTLQVKTEGHSPCLIVMRIKRWERKDCKP-NSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKH-IKIEAAIHSSNVMLILKEQEVADRVGHK.. 150
12 -18.6004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  31  1......................................MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKETEAAIHVSNVQLLDPKTNEPTR...... 80
13 -18.5005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  38  1......................................MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTATQEAPIHVSNVMVV............... 74
14 -18.5005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  38  1......................................MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTATQEAPIHVSNVMVV............... 74
15 -18.1004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  28  3....................................VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVREKEAPLHASKVRPICPACGKPTR...... 84
16 -18.1003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  27  1......................................MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKNQEAPIHVSNVMPLDPKTGEVTR...... 80
17 -17.5003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  28  2.....................................AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPEKEAAIQVSNVAIFNAATGKADR...... 82
18 -16.2004ce4_Y mol:protein length:216 MRPL24  ali model follow..  13  33.................RKNPPGTRRRRVPVEPISDEDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRY-IPSEAPLLHNQVKLVDPTDRKPTD...... 132
19 -16.2005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  18  56..........................DCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKH-IKIEAAIHSSNVMLYSKEQEVASR...... 147
20 -15.8003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  14  27.LPHSEKFIKKSTPEFMKSDLKEVDEKTSFKS---EKEWKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTV-ITIPVSILGKDLRLV............... 134
21 -15.8003j7y_V mol:protein length:216 uL24  ali model follow..  13  42..........................RPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRY-IPSEAPLLHRQVKLVDPMDRKPTE...... 132
22 -11.9002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  14  2..................................SSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDM................................ 48
23 -11.4002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  20  7.....................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV----SVSIFGRATPVELDFSQV.................. 60
24 -11.2004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  19  85....................................IIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENA----AVPIPITLPVEGVKIVSKHKD.......... 147
25 -11.1005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  15  54...................................LEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMD....................................... 92
26 -11.0002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  12  6.....................................EVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKV----LVSIFGRETPVELTFGQV.................. 59
27 -10.8002ckk_A mol:protein length:127 KIN17  ali model follow..  17  66...................................LETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIV....................................... 104
28 -10.7006duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  20  4.....................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV----SVSIFGRATPVELDFSQV.................. 57
29 -10.7001nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  27  2.....................................QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV----MVTIFGRETPVELDFSQV.................. 55
30 -10.7003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  21  88....................................AVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ....................................... 125
31 -10.6001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  16  167...........GKPVPLKEEEVQN-ILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV------SIFGRMTPVELDFDQV.................. 245
32 -10.5004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  23  1........................................FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLN....................................... 34
33 -10.5005oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  15  37................VRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF--RSFAFLHCKKLVENGG----FVCKTRHLVLA............... 113
34 -10.3002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  24  12...........................QELRKYF-------KMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHE.................................. 56
35 -9.3702lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  20  120.....................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKV------TIFGRETPVVLHVSEV.................. 173
36 -9.3502e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  25  21...........................................GQTVRISQGPYKGYIGVVKDATESTARVELH....................................... 51
37 -9.2405ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  20  127.....................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS-----SIFGRATPVELDFSQV.................. 180
38 -9.2404ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  28  1........................................LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPR................................... 38
39 -9.1202xhc_A mol:protein length:352 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  20  296.....................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN--------GRETPVVLHVSEV.................. 349
40 -9.0805xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  25  21...........................................NKTVKIRQGGYKGKIGIVKEANGDRFRVELH....................................... 51
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.