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Query: 5t5h_a mol:protein length:132 Ribosomal protein L27, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKSKERPYGHSLIAGMKKYPKKVVRGMSKRTIQRRSRVGVFLRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNRWFFQRLRFLast
1 -85.7005t5h_a mol:protein length:132 Ribosomal protein L27  ali model  100  1KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKSKERPYGHSLIAGMKKYPKKVVRGMSKRTIQRRSRVGVFLRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNRWFFQRLRF 132
2 -85.2003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  81  3KFLKPGKVVIVTAGRYAGHKAVIVQNSDIATKERPYGRALLAGIKKYPKKVVRGMSKQTIARRSQVGVFLRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRHVFQARYNAGSSMWFFQRLRF 134
3 -82.0003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  43  3KFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136
4 -81.9003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  45  3KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
5 -78.9005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  28  2SLLQAGRFVVMLQGRHAGKKAVVLAAYPEGTEDRKFPYAIVMGIEKYPKKVTKDMPTEVLVKKTQVKLFVKAVNFNHVMLTRHNVKDEDFFKKVAALKDAPAKKALLTEYAAVLRQKYLNNKMAWFFKPLQF 139
6 -74.3003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  39  3KLLKPGKVIIILNGRRAGKKAVIVNTYEGQTRERPYSYCLVAGIEKHPLKVNKSMTKKKIVKRSKVKAFIKCINVNHILPTRYQVANDKSLASDDVLKSKNKKKEVKK-LGKIFRDKFLEPVNKFLHKKLYF 146
7 -73.7005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  34  3KLLKSGRVVVVLNGRHAGKKGVVVNT-WEGSKERQFAFCLVAGIEKAPLKVHKKMPAKKIEKRMRVKPFLKYINVNHLMPTRYTVSSDKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNEFLRKKLRF 146
8 -20.2002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  22  2PAIEVGRICVKVKGREAGSKCVIVDIIDDN-------FVLVTG-----------------KDITGVKR--RRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRM............... 93
9 -16.6005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  10  6RYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAGVTGVKRQSMPVRIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKK............. 134
10 -16.1005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  20  54ANLKVGTVVIIVGGEHQGKRAVVVADQGAGI-------VKVAG--------------------------VNEISQDYLIATSTSIDVAANATEAQVEAAAAKVPEMVDYLKAPFTIKKGNRIHLMKF..... 151
11 -16.0003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  16  52KSIEVGKVAIILTGKHMGKRCIITKILNSGL-------LAVVG----PYEING----------------LKRVDSRYLVVTSTNIFNFEQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVI........ 163
12 -13.9003jbs_A mol:protein length:176 eL6  ali model follow..  30  34..LVPGTVLILLAGRFRGKRVVYLKHLEDNT-------LLISG----PFKVNG----------------LRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKE....................... 115
13 -13.8005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  20  9..CKPGTIAIILAGRFRGRRVVILKQLPRN------GPLVISGYNGVP---------------------IRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSE.................... 94
14 -13.4005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  30  34..LVPGTVLILLAGRFRGKRVVYLKHLEDNT-------LLISG----PFKVNG----------------LRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEXXXXXXXXXXXXXXXXXXKE......... 129
15 -13.2005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  29  40..ITPGTVLILLSGGHRGKRVVFLKQLAPS------GLLLVTGVNGVP---------------------LRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERK.................... 125
16 -12.9003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  23  13RLVEVGRVVLIKKGQSAGKLAAIVEIIDQK-------KVLIDGPKAGVPR--------------------QAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERR........ 109
17 -12.5003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  23  92..ITPGTILIILTGRHRGKRVIFLKQLSSGL-------LLVTGLNRVP---------------------LRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ.................... 176
18 -12.4003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  19  33..CAPGVIAIILAGRFRGRRAVILKQLPHNG-------LVVSGYNGVP---------------------IRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSE.................... 118
19 -12.3005t2a_t mol:protein length:195 eL6  ali model follow..  20  31KSCAPGAIAIILAGRFRGRRAVILKQLPHNG-------LVVSGYNGVP---------------------IRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSE.................... 118
20 -12.3003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  14  23RFVEPGRLCLIEYGPYAGKLCFIVDIVTIT-------RVIVDGLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKV........ 156
21 -12.0003j92_E mol:protein length:284 eL6  ali model follow..  24  140..ITPGTILIILTGRHRGKRVIFLKQLSSGL-------LLVTG----PLVLNR----------------LRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ.................... 224
22 -11.9003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  13  63HYICAGRLVRILRGPRQDRVGVIVDIVDAN-------RVLVENPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSRAHWARKVFDEKDAKTPVS........ 196
23 -11.8004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  25  144..ITPGTILIILTGRHRGKRVVFLKQLASGL-------LLVTG----PLVLNR----------------LRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQ.................... 228
24 -11.8004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  20  5RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDG----PCTQVRR----------------QAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERK........ 101
25 -11.7005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  21  5RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDG----PCTRVRR----------------QAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERK........ 101
26 -11.7003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  21  5RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDG----PCTQVRR----------------QAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKK........ 101
27 -11.6005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  24  147..ITPGTILIILTGRHRGKRVVFLKQLSSGL-------LLVTGLNRVP---------------------LRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ.................... 231
28 -11.4005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  18  5QFVEIGRVALINFGELVDKLAIIVDIVDDK-------RVLIDVLEFDAPR--------------------QTIPIQRLKLTDYVAKIQRNAAPKAAAKDFIKQFYESAWGKQVIARKNKAQMNDF....... 105
29 -11.4005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  18  1NYIRAGRLVRIIRGPRQDRVGVVVDIIDGN-------RVLVEN------------ADKKMWR--------HVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKSARRIAAKRAF........ 98
30 -10.3004adx_7 mol:protein length:126 RPL14E  ali model follow..  16  5KFVQVGRVVYINYGADKGKLAVIVNIINQHIVRQVIPIRRVHLTKFQIDNVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKS................... 125
31 -10.1006d90_M mol:protein length:198 eL14  ali model follow..  18  5RFVEVGRVAYVSFGPHAGKLVAIVDVIDQN-------RALVDGPCTRVRR--------------------QAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERK........ 101
32 -9.3702do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  34  16KYFKMGDHVKVIAGRFEGDTGLIVRVEEN....................................................................................................... 44
33 -9.3105v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  16  3..VHKGDTVLVISGKDKGAKGKVLQAYPDRNR------VLVEGVNRIKKHTAISTTQRGARSGGIVTQ-IHVSNVMVVDSDGKPTRIGYRVDEETGKRVRISKR............................ 100
34 -9.2405o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  16  3..VHKGDTVLVISGKDKGAKGKVLVAYPDRNK------VLVEGVNRIKKHTAVSANERGASSGGIVTQ-IHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKT............................ 100
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.