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Query: 5t5h_v mol:protein length:171 60S ribosomal protein L6, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EYTTLRKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLVISGPMKYNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKTAKAAPKGIVSDARAQLQKKVDAALIEAIRKDPLGKEKAGYLHSVFTIKPGDAPHRMRWLast
1 -101.0005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model  100  1EYTTLRKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLVISGPMKYNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKTAKAAPKGIVSDARAQLQKKVDAALIEAIRKDPLGKEKAGYLHSVFTIKPGDAPHRMRW 171
2 -99.9003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  78  25EYTTLRKSCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKTSKAGKKTPVSDARAQLQKKIDAALIAAIKKDAQGKEKAGYLRSVFTVKPGDAPHRWNW 195
3 -99.7005t2a_t mol:protein length:195 eL6  ali model follow..  77  25EYTTLRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKTSKAGKKTLVSDARAQLQKKIDAALIAAIKKDAQGKEKAGYLRSVFTVKPGDAPHRWNW 195
4 -85.6005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  41  32RMAKLRSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLLVTGPFKVNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERK------LRKKQDEGMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLSKDK---LLTQYLKTRFTLRGNMRPHEMKF 193
5 -82.5005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  47  26RPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED-NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEXXXXXXXXX----------------XXXXXXXXXKEIKAERVEDQKVVDKALIAEIKKTP---LLKQYLSASFSLKNGDKPHMLKF 176
6 -80.2003jbs_A mol:protein length:176 eL6  ali model follow..  44  26RPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED-NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKE----------------ANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTP---LLKQYLSASFSLKNGDKPHMLKF 176
7 -78.7003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  28  46VQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNS-GLLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFELNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNK---VFAHYLKSKFTLRNDMVLHKMKF 221
8 -77.3003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  37  84HVRKLRASITPGTILIILTGRHRGKRVIFLKQLSS-GLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ--------------EGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVP---QLQGYLRSVFALTNGIYPHKLVF 236
9 -73.9005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  37  139HVRKLRASITPGTILIILTGRHRGKRVVFLKQLSS-GLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ--------------EGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVP---QLQGYLRSVFALTNGVYPHKLVF 291
10 -72.3003j92_E mol:protein length:284 eL6  ali model follow..  37  132HVRKLRASITPGTILIILTGRHRGKRVIFLKQLSS-GLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ--------------EGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVP---QLQGYLRSVFALTNGIYPHKLVF 284
11 -71.4004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  38  136HVRKLRASITPGTILIILTGRHRGKRVVFLKQLAS-GLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQ--------------EGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIP---QLQGYLRSVFALTNGIYPHKLVF 288
12 -55.7005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  35  48KAVETRANLKVGTVVIIVGGEHQGKRAVVVADQGA-GIVKVAGPV----VPVNEISQDYLIATSTSIDV-----------------------------------------------------------AANATEAQVEAAAAKVP---EMVDYLKAPFTIKKGNRIHLMKF 151
13 -26.0002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  21  2......PAIEVGRICVKVKGREAGSKCVIVDIIDDN-FVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKI............................................................................ 89
14 -15.3005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  13  5.....TRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVL-VDGA-GVTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDF-----DRFKLMVILKQRRKVMQQKLKSLKK............................. 134
15 -14.7003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  15  17KNLLFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVI-VDGA-FITGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDF-----ERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQKVKA............... 165
16 -14.4005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  16  1....MVKLLKSGRVVVVLNGRHAGKKGVVVNTWEGSAFCLVAGPLKVHK--LKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNE.............................................................. 128
17 -14.4003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  16  12.....WRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVL-IDGP---AGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDF-----ERFQVMVLRKQKRYTVKKALAKA............................... 138
18 -14.0003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  21  1....MGKLLKPGKVIIILNGRRAGKKAVIVNTYEGQSYCLVAGPLKVNK--IKCINVNHILPTRYQVAND-FDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTGEVSKDISFLHKKLY............................................. 145
19 -13.8005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  20  3........LKPGKVVIVTSGRYAGKKAVIVQNTDSKGHSLIAG---MKKYPLRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRK............................................................................. 112
20 -13.7003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  24  1....MTKFLKPGKVVIVTAGRYAGHKAVIVQNSDIAGRALLAGPKKVVR--LRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRH............................................................................. 114
21 -13.6005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  13  3........IRAGRLVRIIRGPRQDRVGVVVDIIDGNRVL-VENP-ADKKMWRHVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKSARRIAAKRAFARSTDF-----ERYQLRVAKRSRAFWTRKVFDENDKKKP.......................... 132
22 -13.6003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  16  61....KSHYICAGRLVRILRGPRQDRVGVIVDIVDANRVL-VENP-EDAKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRTAARVEAKKACAASTDF-----ERYQLRVARRSRAHWARKVFDEKDAKTP.......................... 194
23 -13.4003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  21  1....MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGGHALVAGPLKVTK--IKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQ............................................................... 128
24 -13.4003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  21  1....MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGSHALVAGPRKVTA--VKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK............................................................... 128
25 -13.2005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  20  4........LQAGRFVVMLQGRHAGKKAVVLAAYPEGT-AIVMGPKKVTK--VKAVNFNHVMLTRHNVKDE..................................................................................................... 89
26 -12.0005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  13  3....FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGP---TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDF-----DRYKVMKAKKMRNRIIKNEVKKLQRAALLKA....................... 138
27 -11.9006d90_M mol:protein length:198 eL14  ali model follow..  13  3....FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGPC--TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDF-----DRYKVMKAKKMRNRIIKNEV-KKLQRAALLK....................... 137
28 -11.8005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  14  3....FKQFVEIGRVALINFGELVDKLAIIVDIVDDKRVL-IDVL---FDAPRQTIPIQRLKLTDYVAKIQRNAAPEAAKAAAKDFIKQFYESAWGKQVIARKNKAQMNDFQ-------RFKYAQLEAKRDALVAKELNN................................ 127
29 -11.4004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  12  3....FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGP---TQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKA....................... 143
30 -11.3003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  13  3....FRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGPC--TQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDF-----DRYKVMKARKMRNRLIKLE................................... 126
31 -10.8004adx_7 mol:protein length:126 RPL14E  ali model follow..  19  3....FNKFVQVGRVVYINYGADKGKLAVIVNIINQNRIL-IDGE----HIVRQVIPIRRVHLTKFQID----NVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKS................................... 125
32 -10.3004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  14  2...RVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKK-VSPKYPQGGFIEKEAPLHASKVRP................................................................................................. 74
33 -10.0003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  14  1....MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKH-VPALNQPGGIVEKEAAIQVSNVAI................................................................................................. 72
34 -9.7404wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  20  2.......HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKK-PTQLNPEGGILETEAAIHVSNVQL................................................................................................. 70
35 -9.4203j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  17  2.......HVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKK-PTQANPQGGISNQEAPIHVSNVMP................................................................................................. 70
36 -9.3005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  16  2.......KVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANER-IVTQEAPIHVSNVMV................................................................................................. 73
37 -9.1903j7y_V mol:protein length:216 uL24  ali model follow..  8  55.......YLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGG-THYRYIGKTMDYRGTMIPSEAPLLHRQVKLPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWIDGPKDTSVEDALERTYVPCLKTLQ--EEVMEAMGIKET............ 207
38 -9.1701nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  20  13.....KLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITK-PSMTNPQGGQEQRELALHASKVAL................................................................................................. 83
39 -9.1505v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  16  2.......KVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTAISTTQR-IVTQEAPIHVSNVMV................................................................................................. 73
40 -9.0804ce4_Y mol:protein length:216 MRPL24  ali model follow..  9  55.......HLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEG-THYRYVGKTVDYRGTMIPSEAPLLHNQVKLPTDRKPTDVEWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWIDGPKDTSVEDALEKTYVPRLKTLE--EEVMEAMGIQET............ 207
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.