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Query: 5t7a_A mol:protein length:118 BH0236 protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMASQGNGDSHTHPDYTAGIRGITGNEVTIFFAPTTEARYVDVHLKVNNGQQLNYRMTERNGEWERVVENLSSGDVLEYSFTYEKLGPQYTTEWFTYSRLast
1 -64.0005t7a_A mol:protein length:118 BH0236 protein  ali model  100  1MGSSSSGLVPRGSHMASQGNGDSHTHPDYTAGIRGITGNEVTIFFAPTTEARYVDVHLKVNNGQQLNYRMTERNGEWERVVENLSSGDVLEYSFTYEKLGPQYTTEWFTYSR 112
2 -21.4005h9x_A mol:protein length:444 beta-1,3-glucanase  ali model follow..  34  3...........SSSSGLVPRGSHMASADFTQGAD-VSGNNVTLWFKSSVNTTWVDVHYKVNSGVQQNVRMSFNAGAARFEHTITAAQAEIEYFFTYNNGVPAYDTTTFTYR. 102
3 -11.1003ie4_A mol:protein length:107 Gram-Negative Binding Protein 3  ali model follow..  18  8................................IDVFYPKGFEVSIPDEEGITLFAFHGKLNEGTWARDIVKAKNGRWTFRDRILKPGDTLYYWTYVIYNGLGYREDDGSFV. 95
4 -11.1004yt9_A mol:protein length:432 Peptidylarginine deiminase  ali model follow..  16  338.......................................EADVVSCANATISPVQCYYRINGSGSKAADMTMSTGHYTYSFTGLNKNDKVEYYISAADNSGRKET....... 405
5 -10.9005ak7_A mol:protein length:438 PEPTIDYLARGININE DEIMINASE  ali model follow..  16  335.......................................EADVVSCANATISPVQCYYRINGSGSKAADMTMSTGHYTYSFTGLNKNDKVEYYISAADNSGRKET....... 402
6 -10.1002kha_A mol:protein length:130 Beta-1,3-glucan-binding protein  ali model follow..  18  19................................LEAIYPRGLRVSI-PDDGFSLFAFHGKLNEGHWARDITKPKEGRWTFRDRNLKLGDKIYFWTYVIKDGLGYRQDNGEWT. 105
7 -9.8402lab_A mol:protein length:104 Beta/alpha-amylase  ali model follow..  11  3....................................TTNKVTVYYKK--GFNSPYIHYRPAGGSWTAVKMQDAEISGYAKIT-VDIGSASQLEAAFNDGNNNWDSN...... 72
8 -9.6903aqx_A mol:protein length:104 Beta-1,3-glucan-binding protein  ali model follow..  20  10................................LEAIHPKGLRVSV-PDEGFSLFAFHGKLNEGHWSRDITKPKNGRWIFRDRNLKIGDKIYFWTFVIKDGLGYRQDNGEWT. 96
9 -9.6802rqe_A mol:protein length:106 Beta-1,3-glucan-binding protein  ali model follow..  20  12................................LEAIHPKGLRVSV-PDEGFSLFAFHGKLNEGHWSRDITKPKNGRWIFRDRNLKIGDKIYFWTFVIKDGLGYRQDNGEWT. 98
10 -9.6302laa_A mol:protein length:104 Beta/alpha-amylase  ali model follow..  15  1..................................GGTGNKVTIYYKK--GFNSPYIHYRPAGGSWTAAKMQDAEISGYAKIT-VDIGSASQLEAAFNDGNNNWDSN...... 72
11 -9.5102c3v_A mol:protein length:102 ALPHA-AMYLASE G-6  ali model follow..  12  5.................................ASGDATDITIYYKTGWTHPH--IHYSLNQGAWTTVPLTKSEYEGYVKVT-IEAEEGSQLRAAFNNGSGQWDNN...... 77
12 -9.5103aqy_A mol:protein length:106 Beta-1,3-glucan-binding protein  ali model follow..  18  10................................LEAIYPKGLRVSI-PDDGFSLFAFHGKLNEGHWARDITKPKEGRWTFRDRNLKLGDKIYFWTYVIKDGLGYRQDNGEWT. 96
13 -9.5005m0a_A mol:protein length:86 Fibronectin  ali model follow..  11  4................................TGQEALSQTTISWAPFQDTSEYIISCHPVGTDEEPLQFRVPGTSTSATLTGLTRGA--TYNIIV................ 65
14 -9.1301x4z_A mol:protein length:121 biregional cell adhesion molecule-related/down-regulated oncogenes (Cdon)binding protein  ali model follow..  26................................ISTASETSVYVTWIPRGNGGFPIQSFRVKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPS... 108
15 -9.0402kbg_A mol:protein length:114 Neural cell adhesion molecule 2  ali model follow..  16................................GQPSSGKSFKLSITKQDDGGAPILEYIVKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS. 98
16 -9.0202jtd_A mol:protein length:142 Myomesin-1  ali model follow..  14  41................................VEILEKGQVRFWMQAEKLSSNAKVSYIFNEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHST...... 119

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.