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Query: 5uwz_A mol:protein length:243 Aldehyde decarbonylase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNRTAPSSAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVMKMSARGLASAPRQGSLast
1 -82.9005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model  100  1MNRTAPSSAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVMKMSARGLASAPRQGS 237
2 -75.6005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  62  1MQQLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYGLIGAP.... 233
3 -73.5004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  56  22........ALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS...... 244
4 -73.3004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  62  3...ELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAG...... 230
5 -73.0004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  62  3...QLEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENIGFTTREIMRMSAYGLAA...... 230
6 -72.1004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  56  22........ALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS...... 244
7 -70.7005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  37  2........TQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEAVEARRLLMRAAAR...... 224
8 -67.3005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  64  34........PTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAA...... 256
9 -66.4005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  61  33.......TAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAAAA.... 258
10 -50.2004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  11  6........RSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWED-VIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNK--NRMQGAINFWFPRAVEMLHMTWSDLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDK.............. 226
11 -47.2005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  12  1MD------KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVR-LPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLAILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR-----VEELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKI....................... 209
12 -44.5003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  12  20........EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKLLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAMLQDAINRFWWPALMMFGARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPD............... 246
13 -42.9004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  12  23........EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKLLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAMLQDAINRFWWPALMMFGPNDDNWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPD............... 249
14 -42.7004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  12  46IDFSQDQ-KDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALAEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTAESGYYTFRQIYKPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERLFIRYMDELWPHVIGYVDYLTERTYALEIDYDLLRHYVIKQFNLRKKQISRTK................... 295
15 -40.7003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  14  40IDFTRDR-ADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELSPAAQVRASVTYNHIVEGMALTGYYAWHKICVPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDAVFETRMNELIPLALRLIEEGFALYPPFDLSKDDFLQYSTDKGMRRFGTISNAR................... 284
16 -38.5003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  11  1.............MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLANIGLDLLGQARNFLSYAAELAGEGDEDTLARDERQFSNLLLVEQPNGNFAD-TIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVKMQQAINKLWRFTAELFDADEIDIALIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKG...... 228
17 -37.9002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  9  100..GFCEKRNLLTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAAMDDEMWQPMRKLVEDTLVVDDWFELTLVQNILIDGMMYPLVQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNLQKWIDHWEPQAYEALKPLAEAS-----VGIDGLNEARAELSARLKKFELQSRGVS............... 332
18 -37.7001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  15  77LLDGLTRLGAGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASALNTDLNNAFWTQQKYFTPVLGYLPWVKTWNRWVSEDWGGIWIGRLGKYGVESPR................. 325
19 -37.0004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  13  2................NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLANIGLDLLGQARNFLSYAAELNGCGDEDTLARDERQYSNLLLVEQPNGNFAD-TIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELKMQQAVDNLWRFTGELFLADEVELSLIAVDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGGKQG...... 226
20 -35.6001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  13  82LQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDSAKYLNTDLNNAFWTQQKYFTPVLKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPR................. 330
21 -35.1003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  10  74..AALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFSNEWAAIAAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKREAQKKVDMAIWRAWRLFAVLTGPVMDYYTPKEFMYEWIIGQFERSLIDLGLDKPWYWDLFLKDI........ 324
22 -34.6001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  11  74..AALERDGFVDRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKGNRNMATFGMMDENRHGQIQLYFPYANVKRSRK-TNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKKDAQQMVDVAIWRSWKLFSVLTGPIMDYYTPKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLD....... 325
23 -34.2001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  8  102..DQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPAITNCATYETADHLRWLTHTAYRTRELANCYPDVENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGN--REVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASRYVRQMMGL..................... 330
24 -33.6003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  10  96........DVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVLQKYLNFHYSVTSDLYGAEISTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLR 361
25 -33.5003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  11  43VDLSKDI-QHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADKEATYGERVVAFAAVEGIFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK................... 275
26 -32.7002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  14  76FDAFAQNNGHQNISDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGARVACQMQAIDELRHSQTQQHAMSHYNKHFNG-DRVWYLSVPKSFFDDARSAGPF-EFLTAISFSFEYVLTNLLSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKEVYYEQNGGALFKDLERYGIRPPKYQDVANDAKH....... 329
27 -32.3003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  10  99..DQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPAISNCCILQTADSLRWLTHTAYRTHELSLTYPDAEKEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENNHAVIEGWIEKWRPLADRAAEAYLSMLSSDILPAQ--YLERSTSLRASILTV....................... 327
28 -32.3001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  12  54..........WDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRA---EKYTQVETLVYMAFYERCGAVFCRNLAAQIEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGADIEAYRDKLQNVADA-KPQLRQLISDRITAWGLAGEPSLKQFVTG......... 275
29 -31.8002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  9  67IDLSSDL-KDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPK................... 298
30 -31.7006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  15  49VDFTADTQDFHAHLSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDDVPVIRRRVDYLSNVLKDTKDNRKYMVSLILFSILIENVQFAILLSFTRFKGKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSIAVESDIEIESIKKGDLVNFMKFRIDESLKQINIPV................... 290
31 -31.6002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  11  67VDLSKDL-PHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK................... 299
32 -30.5002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  11  50VDLSKDI-QHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADKEATYGERVVAFAAVEGIFFSIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK................... 282
33 -30.3002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  10  81........PLFLAAEPHQRQRVIGYNERVIATEQLIAEPAFDLVMH-PLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKISERPPTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARTIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLELNAAGIRGAEEIVG-FSGARKMVEQLGLDAVDFDFPERPDWSPHTPR.. 345
34 -29.3004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  10  31IAVSSDK-NTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNYYRRLLKPEVTKKELYMAMVASVFLESYLFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTE-IGLVEDVNRFVRYNANKGLMNLGLEP................... 272
35 -29.3004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  70IPMGKDIELKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYGILGLRASMFIDYVQHIADRRLERIGLKP................... 321
36 -29.2002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  58INMSHDA-KQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNNPTPKTFLESIVYDVILEGLNFFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWKIPGINPEDMETYISFIANKRAVQLGMEK................... 300
37 -29.0002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  12  20....................SLEELLGMAIKAEIGAREFYKSLAEKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE.......................................................................... 165
38 -28.7003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  11  69VDLSKDL-PHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK................... 301
39 -28.6003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  13  36VPLSNDI-PAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENKAQIIQQHYRGDDPLKKKIASVFLESFLF-PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQY---TPWADDVKAFLCYNANKALMNLGYEP................... 269
40 -28.5002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  9  68IDLSSDL-KDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKEIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGI-CAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK................... 299
41 -28.4004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  13  13.........NIGEANPRFAQLLLEQFGG-ATGELSAALQYWVQSFHVAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKS-SQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSDEGTKQTLVHLLTREISHTQMFMKALDSLGKL........................................................................... 180
42 -28.3001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  11  46IPVSNDI-QSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPTMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEANENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTE-LGWTEDVKRFLRYNANKALNNLGYEG................... 279
43 -28.2001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  12  36VPLSNDI-PAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEE-KAQIILAHYVSDEPLKKKIASVFLESFLFLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRY-AETGWVNDVKAFLCYNANKALMNLGYEA................... 269
44 -28.2001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  11  41VPVSNDI-PSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEE-KAEIVLQSYRGDEPLKRKVASTLLESFLFLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNEVEY---VGLTEDVKKFLRYNANKALMNLGYEA................... 274
45 -28.1001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  10  62IELAKDT-EDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAANDDSLYAERLVAFAAKEGIFQAMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEK................... 293
46 -28.0001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  11  127IDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKADADALFGERLVAFASIEGVFFSIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKK................... 360
47 -27.9004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  35IPLSNDL-DDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNKAEIINEIYLNGTALEKKIASVFLETFLFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGY---VGWTEEVKTFLRYNANKALMNLGQDP................... 268
48 -27.7002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  15  4...................YTLAEFLAHAIALETEAAERYVELADMMLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSDPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS.......................................................................... 153
49 -27.7002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  11  1MQEKPQEPKVVGVEILEKSKKLVDKLVKATAAEFTTYYYYTILRMHLEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKD-PKEILKVLLEAEQCAIRTWKEVCDMTDPRTYDLAQRILQEEIEHEAWFLELLYG............................................................................... 169
50 -27.6006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  9  62IPVSNDL-TSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEEATETLQERAKALIPYYVNDDPLKSKVAAALM-PGFLL-PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEKQAEMKEFVFKLLYELIDLEKAY---FGLADDAIRFSVYNAGKFLQNLGYDS................... 295
51 -27.4006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  8  66IPVSNDL-PSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQILTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEANEALQARPKALIPFYTADDPLKSKIAAALM-PGFLLLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEKQAEMKQFVFDLLDKMIGLEKTY---FGLADEAIRFSLYNAGKFLQNLGYES................... 299
52 -27.3005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  10  52..........WERLSDETRSRLVAYNRNTVLIEQRIANPAFELVIG-QQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEAFVAPDSIVAFEGVPGWEHLVQDHSGIHTLLTEMDV..................... 295
53 -27.2001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  16  1.............MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLNSDAQKTVKKIIDQEKEHLRKLLEMKRES.............................................................................. 150
54 -27.1001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  11  108VDLSKDI-QHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADKEATYGERVVAFAAVEGIFF-IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNK................... 340
55 -26.9001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  16  1..........MAGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGK------------VVTGQAVPVIYESDADQEDATIEAYSQFLKVCDIVTARLFERIIEEEQAHLTYYENIGSHI.............................................................................. 146
56 -26.9001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  9  53VDVSRDR-IDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................... 323
57 -26.4002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  16  5...............SHDVKELIEGLNEDLAGEYSAIIMYNHNAATVQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLR-------------VKQAEDVREMLEYARQSEYETIKRYEKRKEQAMTELVVKLEDMIADETNHMEELDRLLNDK.............................................................................. 144
58 -26.4003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  14  9..............TARYNRFVADLFGMMAYGELSAFERFSADARYSPTLHDRLGRIAVVEFRHYELVSARLEAMGIDAEDAM--LPFQAAVDYFHSRTRPADWYESLM-KAYVIDTVSADFYRAISRYVDAGTRDVIEQIQASD-ETTEVLRERLRSALADDPRLASRLARRLLGEALTQAQRVSYEHAFLGSLVSGLIAGLAEKHSKRMTQLGLTG................... 225
59 -26.0004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  15  3...........GSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKANDIAALFRSTAEGETGHAHGHLEYLEAVGDPATGLPFGTSRQNLQSAIAGE-----------------THEYTDMYPGMAKTAFEEIANWFETLAKAERSHANRYTKALDGL.............................................................................. 142
60 -25.8001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  9  53VDVSRDR-IDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................... 323
61 -25.8001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  9  53VDVSRDR-IDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRYCSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................... 323
62 -25.8001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  9  53VDVSRDR-IDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................... 323
63 -24.8001jku_A mol:protein length:266 pseudocatalase  ali model follow..  10  5.TRKLQYNAKPDRSDPIMARRLQESLG--QWGETTGMMSYLSASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVADMRFNVVRESEARLQVSRLYSMTDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGI........................................................................ 198
64 -24.6003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  16  1MAMGTLEAQTQGPGSMKGEPKVIERLNEALFLELGAVNQYWLHYRLLTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSP------------LRIGQNVKEVLEADLKGEYDARASYKESREICDYVSKQLFDELLADEEGHIDFLETQLDLL.............................................................................. 156
65 -24.5002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  14  10.............QGKLDVKSLIDQLNAALSEEWLAYYQYWVGALVVADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKK------LARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFTDYTTCDIAKHILAEEEEHEQDLQDYLTDIARMKESFLKK.................................................................... 170
66 -24.5003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  14  2................QGDAKVIEYLNAALRSELTAVSQYWLHYRLQGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNP------------LRIGQTLRETLDADLAAEHDARTLYIEARDHCDYPSKMLFEELIADEEGHIDYLETQIDLM.............................................................................. 141
67 -24.4003sid_A mol:protein length:180 Symerythrin  ali model follow..  20  24...................NNTDANAASSIEVEYECDCMYPTFAEIAPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEA--STIESQIDAVASDSRGLRRALETALEVETIESQTYPAFAKLANMEVATAFEAIVKSETKHANWVKRALENLLEVA.......................................................................... 180
68 -24.4002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  17  6................QGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM.............................................................................. 145
69 -24.3003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  17  2................QGDPDVLKLLNEQLTSELTAINQYFLHSKMQTELAEHTRAESFEEMRHAETITDRILLLDGLPNYQRLFS------------LRVGQTLREQFEADLAIEYEVLERLKPGIVLCDATSARLLEQILADEETHIDYLETQLQLM.............................................................................. 141
70 -24.3005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  18  2................QGDPEVIEFLNEQLTAELTAINQYFLHAKLQTKLAKYTRAESFDEMRHAEVLTDRILLLDGLPNYQRLFH------------VRVGQSVTEMFQADREVELEAIDRLRRGIEVMDITSANVFEAILADEEHHIDYLETQLDLI.............................................................................. 141
71 -24.2003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  16  1.............MGMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM.............................................................................. 143
72 -24.0002cwl_A mol:protein length:302 manganese-free pseudocatalase  ali model follow..  10  14.........MPKEQDPNAAAAVQALLG--RFGEMSTLMNYMYQSKALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPESAPLGFAKDVRN-LILDLLHNFFLEVAARTHKLRVYEMTNPVAREMIGYLLVRGGVHAAAYGKALESLTGVEMTKM...................................................................... 207
73 -24.0001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  18  1.............MKDLKGTKTAENLKQGFIGESMANRRYLYFAKRAPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDK---------------PIGTLEQMIESAIAGETYEWTQMYPGFAKVAFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT.......................................................................... 144
74 -23.9001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  15  2................KGDAKVIEFLNAALRSELTAISQYWVHFRLQAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDP------------LRIGEGPRETLECDLAGEHDALKLYREARDYCDIVSKNIFESLITDEEGHVDFLETQISLY.............................................................................. 141
75 -23.7004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  20  2................KGDQKVIEYLNRGLRSELTAVSQYWLHYRMLKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDP------------LRIGQTVKEVLESDLAAEREARALYQEGAAYADFPSKNLFEELMGDEEHHIDFLETQLDLV.............................................................................. 141
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.