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Query: 5ux2_A mol:protein length:234 Aldehyde decarbonylase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEAVEARRLLMRAAARMVGSLast
1 -84.9005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model  100  1MTQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEAVEARRLLMRAAARMVGS 228
2 -73.8004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  42  8.LELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENIGFTTREIMRMSAYGLAAV... 231
3 -73.4004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  39  8.TEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAGV... 231
4 -70.7005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  37  9.AALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVMKMSARGLAS.... 231
5 -70.7005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  40  9.KELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIMRL---SAYGLIGA 232
6 -70.0004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  39  22.ALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRM---AAAALVS. 244
7 -68.8004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  39  22.ALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRM---AAAALVS. 244
8 -65.5005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  39  34.PTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAA.... 256
9 -64.7005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  37  34.AAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAAAAA. 259
10 -53.4004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  11  5LRSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWED-VIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNK--NRMQGAINFWFPRAVEMLHMTETHLRDLNITKNDLINGYIKTTNEELKKCGYNEVNYDK............ 226
11 -52.2005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  11  3.KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVR-LPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLAILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR-----VEELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKI..................... 209
12 -48.6003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  12  19IEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAEAQKQMLQDAINRFWWPALMMFGPNDDNWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGH.... 255
13 -47.4004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  11  52QKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALAEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTAESGYYTFRQIYKPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDEELFIRYMDELWPHVIGYVDYLTERTYALEIDYDLLRHYVIKQFNLRKKQISRTK................. 295
14 -47.1004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  12  22IEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAEAQRQMLQDAINRFWWPALMMFGPNDDNWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPDLQFDEASGH.... 258
15 -45.8003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  16  46RADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELSPAAQVRASVTYNHIVEGMALTGYYAWHKICVPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDAVFETRMNELIPLALRLIEEGFALYGDFDLSKDDFLQYSTDKGMRRFGTISNAR................. 284
16 -41.6003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  14  1......MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLARDERQFSNLLLVEQPNGNFADTIA-RQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGDVSGQKMQQAINKLWRFTAELFDADEIDEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQ............... 217
17 -40.8002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  10  108...LTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATAVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAAMDDEMWQPMRKLVEDTLVVDDWFELTLVQNILIDGMMYPLVQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNLQKWIDHWEPQAYEALKPLAEA-----SVGIDGLNEARAELSARLKKFELQSRGVSA............ 333
18 -39.8004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  16  2.........NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPEIDLALANIGLDLLGQARNFLSYAAELNGCGDEDTLARDERQYSNLLLVEQPNGNFAD-TIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGELSNRKMQQAVDNLWRFTGELFLADEVELSLIAVDPRELQAEWQSAVHTALLDSGLQIPQ............... 215
19 -39.4001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  14  84LGAGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIAPASAKFLNTDLNNAFWTQQKYFTPVLGYLFEYGSKNRWVSEDWGGIWIGRLGKYGVESPRSLRDAKR........ 332
20 -37.8003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  11  79AKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFSNEWAAIAAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPKEFMYEWIIGQFERSLIDLGLDKPWYWDLFLK........ 322
21 -37.8003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  10  49IQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK................. 275
22 -37.3001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  12  89LNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDSAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVVYEDWGGIWIGRLGKYGVESPRSLKDAKQ........ 337
23 -36.8001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  12  83....DRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKGNRNMATFGMMDENRHGQIQLYFPYANVKRSRK-TNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLD..... 325
24 -35.8001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  9  110...DQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPAITNCATYETADHLRWLTHTAYRTRELANCYPDVENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGN--REVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASRYVRQMMGL................... 330
25 -35.7002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  13  73LPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEEVREIIVDAVKIEQEFLTEALPV-GLIGMNCILMKQYIEFVADRLLVELGFSK................. 299
26 -35.6002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  10  73LKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKEIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPK................. 298
27 -35.1003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  12  95QDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNESFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVLQKYLNFHYSVTSDLYGAEISSNAATGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSAL... 356
28 -34.4002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  10  56IQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK................. 282
29 -34.1003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  10  108....QMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPAISNCCILQTADSLRWLTHTAYRTHELSLTYPDAEKEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENNHAVIEGWIEKWRPLADRAAEAYLSMLSSDILPAQ--YLERSTSLRASILTV..................... 327
30 -33.9006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  12  55TQDFHALSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVNVLKDTKSQDNRKYMVSLILFSILIENVSLFSQFAILLSFTRKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPALVRETVKDSIAVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPV................. 290
31 -33.8004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  13  37KNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVNLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNYYRRLLKPEVTKKELYMAMVASVFLESYLFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEP................. 272
32 -33.6002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  12  87....NISDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGARVACQMQAIDELRHSQTQQHAMSHYNKHFNG-DRVWYLSVPKSFFDDARSAGPF-EFLTAISFSFEYVLTNLLSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKEVYYEQNGGALFKDLERYGIRPPKYQDVANDAKHHLSHQ 334
33 -33.6003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  11  42IPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAANAPLQRKAQIIQQHYRGDDPLKKKIASVFLESFLFYSGFWLPSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISEELKSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEP................. 269
34 -33.3001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  11  52IQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPTMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEANENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEG................. 279
35 -33.2001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  14  47IPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDANRNLQRKAEIVLQSYRGDEPLKRKVASTLLESFLFYSGFYLPSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDELKDYTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYEA................. 274
36 -33.2001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  12  42IPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAANPPLQRKAQIILAHYVSDEPLKKKIASVFLESFLFYSGFWLPSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSEELKLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYEA................. 269
37 -32.9002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  64AKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNNPTPKTFLESIVYDVILEGLNFFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWKIPGINPEDMETYISFIANKRAVQLGMEK................. 300
38 -32.7004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  12  41LDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEINPYLQKKAEIINEIYLNGTALEKKIASVFLETFLFYSGFFTPGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEKLKEWMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRYNANKALMNLGQDP................. 268
39 -32.7006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  9  72LPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQILTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEANEALQARPKALIPFYTADDPLKSKIAAALMPGFLLYGGFYLPARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEMKQFVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYES................. 299
40 -32.5006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  10  68LTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEEATETLQERAKALIPYYVNDDPLKSKVAAALMPGFLLYGGFYLPARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSAEMKEFVFKLLYELIDLEKAYLKELYEDFGLADDAIRFSVYNAGKFLQNLGYDS................. 295
41 -32.3003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  12  75LPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADRKSTFGERVVAFAAVEGVFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK................. 301
42 -32.0002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  10  74LKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKEIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK................. 299
43 -31.9001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  8  68TEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAANDDSLYAERLVAFAAKEGIFASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEK................. 293
44 -31.9004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  76IELWDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYGILGLRASMFIDYVQHIADRRLERIGLKP................. 321
45 -31.2002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  15  81.PLFLAAEPHQRQRVLTYNERVIATEQLIAEPAFDLVMH-PLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKISERPPTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARTIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFSALLLELNAAGIRGAERLVRDFSGARKMVEQLGLDDAVDFDFPERP....... 337
46 -31.1001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  11  114IQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPEQRVREIITNAVRIEQEFLTEALPV-KLIGMNCTLMKQYIEFVADRLMLELGFNK................. 340
47 -31.1001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  10  59RIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................. 323
48 -31.1001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  9  53..DWDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYR---AEKYTQVETLVYMAFYERCGAVFCRNLAAQIEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLIEAYRDKLQNVADAGIFGKPQLRQLISDR---ITAWGLAG-------EPSLKQFVTG 275
49 -29.9001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  10  59RIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRYCSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................. 323
50 -29.9001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  10  59RIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................. 323
51 -29.9001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  9  133IHDWNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKK................. 360
52 -29.8001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  10  59RIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVEQIQKRAEGISSYYDELIELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................. 323
53 -28.8005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  10  52...WERLSDETRSRLLAYNRNTVLIEQRIANPAFELVIG-QQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEAFTTWESIVAFEGVPGWEHLVQDHSGIHTLLTEMDV................... 295
54 -28.2004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  10  56LLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQDDEISLFKAMVASVYLESFLFYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEELREFAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRYNANKALMNLGFDP................. 290
55 -27.5003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  18  9.......TARYNRFVADLFGMMAYGELSAFERFSADARYSPTLRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAM--LPFQAAVDYFHSRTRPADWYESLM-KAYVIDTVSADFYRAISRYVDAGTRDVIEQIQASD-ETTEVLRERLRSALADDPSRLALWGRRLLGEALTQAQRVSYEHAFLG-LVSGLIAGLAEKHSKRMTQLGLTG................. 225
56 -25.3005olk_A mol:protein length:430 Ribonucleoside-diphosphate reductase, beta subunit 1  ali model follow..  11  147IQDFKTLSEVERSAIKNTMLAISQIEVAVKTFWGDVHHRLPEIAAVGATFAESEVRHHDAYSHLLEILGLNEEFKELKKKPVIMKRV-AKSDDDREYTESILLFALFIEHVLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPNLIKEMCLNSFEAESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAIGLEK................. 382
57 -24.8002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  13  17..........ADFSLEELLGMAIKAEIGAREFYKSLAEKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE........................................................................ 165
58 -24.2001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  14  1......MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLNSDAQKTVKKIIDQEKEHLRKLLEMKRES............................................................................ 150
59 -24.1002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  13  4............YTLAEFLAHAIALETEAAERYVELADMMLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSDPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS........................................................................ 153
60 -24.1004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  11  15........GEANPRFAQLLLEQFGGATGELSAALQYWVQSAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKLDSQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSDEGTKQTLVHLLTREISHTQMFMKALDSLGKL......................................................................... 180
61 -23.7002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  10  13.VEILEKSGLDIKKLVDKLVKATAAEFTTYYYYTILRMHLEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKE-ILKVLLEAEQCAIRTWKEVCDMTDPRTYDLAQRILQEEIEHEAWFLELLYG............................................................................. 169
62 -23.2004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  12  3....GSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKANDIAALFRSTAEGETGHAHGHLEYLEAVGDPATGLPFGTSRQNLQSAIAGE-----------------THEYTDMYPGMAKTAFEEIANWFETLAKAERSHANRYTKALDGL............................................................................ 142
63 -22.2002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  11  5........SHDVKELIEGLNEDLAGEYSAIIMYNHNAATVQVLKPFFESEISDEQGHALYLAEKIKTLGGTP-------------TTIPLRVKQAEDVREMLEYARQSEYETIKRYEKRKEQAMTELVVKLEDMIADETNHMEELDRLLNDK............................................................................ 144
64 -22.0001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  13  1...MAGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGK------------VVTGQAVPVIYESDADQEDATIEAYSQFLKVCDIVTARLFERIIEEEQAHLTYYENIGSHI............................................................................ 146
65 -21.6001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  12  80VRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPY--LGFIYTSFQERATFISHGNTARQADIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMFDHFSAVAQRLGVYTAKDYADILEFLVGRWTGLSAEGQKAQDYVCRLPPRI... 334
66 -21.5001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  11  1......MKDLKGTKTAENLKQGFIGESMANRRYLYFAKRAPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPI-----------GTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT........................................................................ 144
67 -21.0002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  10  55VRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPY--LGFIYTSFQERATFISHANTAKLADKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMM-SALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRAKEAPTM 326
68 -20.4002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  14  10......QGKLDVKSLIDQLNAALSEEWLAYYQYWVGALVVADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKK------LARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFTDYTTCDIAKHILAEEEEHEQDLQDYLTDIARMKESFLKK.................................................................. 170
69 -20.4003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  13  1......MGMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM............................................................................ 143
70 -20.4003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  15  2.........QGDAKVIEYLNAALRSELTAVSQYWLHYRLQGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNP------------LRIGQTLRETLDADLAAEHDARTLYIEARDHCDYPSKMLFEELIADEEGHIDYLETQIDLM............................................................................ 141
71 -20.3002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  14  6.........QGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM............................................................................ 145
72 -20.2003sid_A mol:protein length:180 Symerythrin  ali model follow..  15  24............NNTDANAASSIEVEYECDCMYPTFAEIAPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLERLVSTIESQIDAVASDSRGLRRALETALEVETIESQTYPAFAKLANMEVATAFEAIVKSETKHANWVKRALENLLEVA........................................................................ 180
73 -20.2003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  14  2.........QGDPDVLKLLNEQLTSELTAINQYFLHSKMQTELAEHTRAESFEEMRHAETITDRILLLDGLPNYQRLFS------------LRVGQTLREQFEADLAIEYEVLERLKPGIVLCDATSARLLEQILADEETHIDYLETQLQLM............................................................................ 141
74 -20.1005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  16  2.........QGDPEVIEFLNEQLTAELTAINQYFLHAKLQTKLAKYTRAESFDEMRHAEVLTDRILLLDGLPNYQRLFH------------VRVGQSVTEMFQADREVELEAIDRLRRGIEVMDITSANVFEAILADEEHHIDYLETQLDLI............................................................................ 141
75 -19.9001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  15  2.........KGDAKVIEFLNAALRSELTAISQYWVHFRLQAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDP------------LRIGEGPRETLECDLAGEHDALKLYREARDYCDIVSKNIFESLITDEEGHVDFLETQISLY............................................................................ 141
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.