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Query: 5uxg_A mol:protein length:220 aldehyde deformylating oxygenase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDKNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLATVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKRVEELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKILGSGSLast
1 -89.7005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model  100  1MDKNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLATVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKRVEELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKILGSGS 214
2 -59.1004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  18  51.DKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERFIRYMDELWPHVIGYVDYLTELEIDYDLLRHYVIKQFNLRKKQI..... 291
3 -56.5003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  19  45.DADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRALADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKCVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDAMNELIPLALRLIEEGFALYGDFDLSKDDFLQYSTDKGMRRFGTI..... 280
4 -52.2005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  11  2..TQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIP--ADRDELQRLGRMEGDHASAFVGCGRNLGVVADLLARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAV-----AAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKAVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESV..... 207
5 -51.2003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  14  48.DQHWESLKPEERYFISHVLAFFAASDGIVNENLVEFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEVREIIINAVRIEQEFLTEALPIGMNCTLMKQYIEFVADRLMLEL..... 271
6 -49.3002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  13  72.DPHWNKLKADEKYFISHILAFFAASDGIVNENLVEFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEVREIIVDAVKIEQEFLTEALPIGMNCILMKQYIEFVADRLLVEL..... 295
7 -48.3002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  12  72.DKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENLWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEVQNIVKEAVEVERSFICESLPIGMNSRLMSQYIEFVADRLLECL..... 294
8 -47.2005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  12  1MNAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLP--DHAEALKKLAAMENRHFKGFQSCARNLEVTPDDFARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAI-----AAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVRENAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDI..... 214
9 -47.0004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  11  8..LELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLP--DQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMFAQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAI-----AAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENI..... 213
10 -46.9004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  10  8..TEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLP--EDKEELTRLAKMENRHKKGFQACGNNLQVNPDMYAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAI-----AAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKENKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNI..... 213
11 -46.8002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  14  55.DQHWESLKPEERYFISHVLAFFAASDGIVNENLVEFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPERVREIIINAVRIEQEFLTEALPIGMNCTLMKQYIEFVADRLMLEL..... 278
12 -46.4005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  8  9..KELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLP--ESHDELIRLSKMESRHKKGFEACGRNLAVTPDLFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAI-----AAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNI..... 214
13 -45.7004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  8  25.....DFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLP--DHVEELKRLAKMEMRHKKGFTACGKNLGVEADMFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAI-----SAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCRENRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEI..... 227
14 -45.3001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  10  46.DPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAERGDEPLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNL..... 270
15 -44.9004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  13  36.DNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDPLLEKKAGIITSKPEVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSATQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNL..... 268
16 -44.8003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  9  41.DPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQRGDDPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNL..... 265
17 -44.7002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  63.DKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQHDDVLKERNEFIIDVDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPEVKTTLMKAADLEKDWFRYIIGPGINPEDMETYISFIANKRAVQL..... 296
18 -44.5006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  13  54.DQDFHALSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVIRRRVDKSQDNRKYMVSLILFSILIENVSLFSQFAILLSFRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDVRETVKDSIAVESDILDWIFEESIKKGDLVNFMKFRIDESLKQI..... 286
19 -44.5001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  11  67.DEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIEFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPIEKIITEAVEIEKEYYSNSLPFGMDLKSIHTYIEFVADGLLQGF..... 289
20 -44.4004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  8  25.....DFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLP--DHVEELKRLAKMEMRHKKGFTACGKNLGVKADMFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAI-----SAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCRENRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEI..... 227
21 -44.2001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  9  41.DPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQVSDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNL..... 265
22 -44.2001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  10  51.DQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAILLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENENLQRKAKNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSETFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNL..... 275
23 -44.1004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  9  40.DDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDLRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAELNGTALEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRYNANKALMNL..... 264
24 -43.8006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  9  71.DPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEAHEWVVDNEALQARPKTADDPLKSKIAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNL..... 295
25 -43.6006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  10  67.DTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVQVPNSLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEEAHEWVINTETLQERAKVNDDPLKSKVAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPVFKLLYELIDLEKAYLKELYEDFGLADDAIRFSVYNAGKFLQNL..... 291
26 -43.6004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  19  75.DELWKSLSEDERRVILLNLGFFSTAESLVGNNIVLIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIVELIKRAVDLEIEYAQDCLPLGLRASMFIDYVQHIADRRLERI..... 317
27 -43.5003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  13  74.DPHWNKLKADEKYFISHILAFFAASDGIVNENLVEFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEVREIIVDAVKIEQEFLTEALPIGMNCILMKQYIEFVADRLLVEL..... 297
28 -43.1002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  12  73.DKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENLWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEVQNIVKEAVEVERSFICESLPIGMNSRLMSQYIEFVADRLLECL..... 295
29 -43.0001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  13  113.DQHWEALKPDERHFISHVLAFFAASDGIVNENLVEFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEVREIITNAVRIEQEFLTEALPIGMNCTLMKQYIEFVADRLMLEL..... 336
30 -42.1005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  9  34..PTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLA--DKKAELVGLSKMENRHMKGFQACGRNLKVTPDMFAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAI-----AAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNI..... 239
31 -42.1001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  11  58.DIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVLLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDCYDLFVQAAQQEKDWADYLFRIGLNKDILCQYVEYITNIRMQAV..... 319
32 -41.6005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  10  33.TAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMP--EQSEELASLAKMEARHKKGFTACGKNLNVTPDMFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAI-----SAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDNRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNI..... 239
33 -41.2001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  13  132.DHDWNRMNENERFFISRVLAFFAASDGIVNENLVEFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPVEKIVTEAVEIEQRYFLDALPLGMNADLMNQYVEFVADRLLVAF..... 356
34 -40.4004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  55.DLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETYLQKKAQMIVGLYKAIQKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRYNANKALMNL..... 286
35 -40.2001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  11  58.DIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVLLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNGKTVTVSLRELKKKLYLCLMSVNALEAIRYYVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDCYDLFVQAAQQEKDWADYLFRIGLNKDILCQYVEYITNIRMQAV..... 319
36 -40.0001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  12  58.DIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVLLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVNEQIQKRAEGISSSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDCYDLFVQAAQQEKDWADYLFRIGLNKDILCQYVEYITNIRMQAV..... 319
37 -39.9004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  11  6..RSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGAGL-----YQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNY-QNKNRMQGAINFWFPRAVEMLTHLRDLNITKNDLINGYIKTTNEELKKC..... 217
38 -39.9001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  11  58.DIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVLLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDCYDLFVQAAQQEKDWADYLFRIGLNKDILCQYVEYITNIRMQAV..... 319
39 -39.0002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  6  108....LTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESKAYMRKLVEDTLVVDDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNRELLQKWIDARAELSARLKKFELQSRGVSA.................. 333
40 -34.9001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  8  110....DQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGNLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASRYVRQMM..... 328
41 -34.5003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  12  107....DQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENPDNIEKWRPLADRAAEAYLSMLSSDILPAQYLER--STSLRASILTV..... 327
42 -34.4005olk_A mol:protein length:430 Ribonucleoside-diphosphate reductase, beta subunit 1  ali model follow..  12  148..QDFKTLSEVERSAIKNTMLAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLLEILGLNEEFKELKKKPVIMKRVHKSDDDREYTESILLFALFIEHVSLFSQFLIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEIKEMCLNSFEAESKVVDWIFEDFLPKAVINEFLKNRFNKSLEAI..... 378
43 -34.2001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  12  87....GNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASAKKYFTPVLGYLFEYGSKFKVEPWVKTWNRWVSEDWGGIWIGRLGKYG. 320
44 -33.9003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  7  20..EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAI-----VNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAINRFSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLG. 239
45 -33.6004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  8  23..EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAAI-----VNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQRQMLQDAINRFSPNSARSMAWKISNDELRQRFVDNTVPQVEIL..... 241
46 -33.3003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  11  82....YENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAYAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKRAQKKVDMAIWRAWRLFAVLTGPVMDKEFMYEWIIGQFERSLIDL..... 309
47 -32.4001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  12  92....GVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKKYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYG. 325
48 -30.6001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  10  83.....DRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKAIARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKKVDVAIWRSWKLFSVLTGPIMDYYTPLEFMLEWIVAQFERQLLDL..... 309
49 -29.8002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  13  45..TDWSQWEDPFRNALKLFISGISPLEHAAFQGYSKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHSVPKSFFDDARSAGPF-EFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVPIVQRWID-FWRGFRLLSLVS--SEAWEVYYEQNGGALFKDLERYG. 314
50 -26.5001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  10  51.GRDWDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFLEDWWGRWLGRWTAEEHLHAIALREYLVVTRE--VDPVANEDVRVQHVMKGYRAEKYTQVETLVYMAFYE----RCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRD------ETIAAIAARAADLDVLGADIEAYRDKLKPQLRQLISDRITA.. 260
51 -26.4003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  6  1.......MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLAFTRDERQFSNLLLVEQPNGN----ADTIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRA...... 198
52 -25.6002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  9  83....FLAAEPHQRQRVLGYNERVIATEQLIAEPAFDLVMHSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRERPPQPELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINAL---LALLARDATIQPMHSLITTLHLRDETAHGSIVVEVVRELEQQRRALVRCLPIALEAFAE-LLELNAAGIRGAEEGTRLVRDFSGARKMVEQLG. 324
53 -25.4004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  7  2..........NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELNGCGDEDTLAFGRDERQYSNLLLVEQPNGN----ADTIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELSNRKMQQAVDNLWRFTGELQGIAVDPRELQAEWQSAVHTALLDS..... 209
54 -24.5005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  8  52....WERLSDETRSRLLAYNRNTVLIEQRIANPAFELVIGLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRDRVLPDSHITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINA---YLDLLADDQEIQVVNSTTVKLHNRDEYCHASISGEMMKQVADRRRFLLEKVVAGLEAFVAWESIVAFEGVPGWEKATHLVQDHSGIHTLLTEMD. 294
55 -24.4003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  11  96..DVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLE-PRILTAFNEKTPDWLSFFMFTFITD----RDGKFQLASLAESAFDP-LARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAA-----GVIDLPTLQKYLNFHYSVTSDLYGAEIS 304
56 -19.4002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  9  54.QVRELRERAKEPDDYFVVLVGDMITEEALPTYMSMLNRCAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSG--RVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPD................................................. 224
57 -18.2001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  10  1.......MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFNG-EIKKTFLELADQERIHAEIFRKMSDQENWDEVDSGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVE----KDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRES....................................................... 150
58 -18.2001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  11  84.RERAKEIPDD----YFVVLVGDMITEEALPTYQTMLNTLDGPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFI--YTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPD................................................. 249
59 -18.2001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  10  1.......MKDLKGTKTAENLKQGFIGESMANRRYLYFAKRADEPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIGTLEQMIESAIAG---------------ETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT................................................... 144
60 -17.9003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  9  9........TARYNRFVADLFGMMAYGELSAFERFSADARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAMLPFQAAVDYFHSRTRPADWYESLMKAY--VIDTVSA------FYRAISRYVDAGTRDVIEQIQASD-ETTEVLRERLRSALADDPRLRRLLGEALTQAQRVSYEHAFLG-LVSGLIAGLAEKHSKRMTQL..... 221
61 -17.9002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  10  17...........ADFSLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPEQPVARELEKVQDIIDLIRWAMKAE----EIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNWEM.................................................. 166
62 -17.8004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  9  15.........GEANPRFAQLLLEQFGGELSAALQYWVQSFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKSTLFNAWTASYLNEGGDVVRDLRANIAAE----AGARQTYEELIKLSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKL.................................................... 180
63 -17.7003sid_A mol:protein length:180 Symerythrin  ali model follow..  9  2....GLNYNQEDFNNTDANAASSIEVEMYECDCFAEIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAVSTIESQIDAVASDSRGLRRALETALEVETIESQKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE..................................................... 178
64 -17.0004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  11  3.....GSMAQLKGSKTEENLKYAFAGESQANRRYLYFASKADVNDIAALFRSTAEGETGHAHGHLEYLEAVGDP--ATGLPFGTSRQNLQSAIAGETH----------------YTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALDGLVD..................................................... 144
65 -16.9002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  10  11VGVEILEKSGLDIKKLVDKLVKATAAEFTTYYILRMHLTGMEGEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYGK--DPRTYDLAQRILQEEIEHEAWFLELLYG........................................................ 169
66 -15.8002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  11  4.............YTLAEFLAHAIALETEAAEELADMMEAHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDIHYLMPYHALRYARDNE----IRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPSI.................................................. 154
67 -15.2002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  12  5.........SHDVKELIEGLNEDLAGEYSAIIM-AATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRVKQAED------------VREMLEYARQSE---TIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLNDK....................................................... 144
68 -15.1001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  10  2.....AGNREDRKAKVIEVLNKARAMELHAIHQ-HYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPV-----------IYESDADQE---TIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDT................................................. 152
69 -14.6003dde_A mol:protein length:239 TENA/THI-4 protein, Domain of Unknown Function with a Heme Oxygenase-like Fold  ali model follow..  7  28....IHEVLDGKKALYAIYMTETYHYTKHNAKNQALVGIMGKDLPGKYFCFHHAHEEAGHELMALSDIASIGFDREDVLPATETLIAYLYWISATGN---VQRLGYSYWAENVYGYIDPVLKAIQSTLDLTPQSMKFFIAHSKIDAKHAEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILDDV........................... 217
70 -14.5003bjd_A mol:protein length:332 Putative 3-oxoacyl-(acyl-carrier-protein) synthase  ali model follow..  10  129....SQYVFSGSRAQLQVFLRHQWFRTFRLYRDAADLLVNLTDVDEAAALARYLYGEGSHPRLLAKLLEAIGLEADFQAVSTMPEEIAYLNNRARRHAEVGWGLAVFYITELVVPGNHEKLYRALLQAGLSEDQAEYYKVHISLVPPRAKREWQLIARRIPDVQFQNAFLTSLSQHFRVERAYYDAI........................... 322
71 -14.4005n5e_e mol:protein length:99 PFC_05175  ali model follow..  10  9...LINRDKPYTKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNL............................................................................................................................................... 76
72 -14.4003q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  10  17......PISEEEKEGLIEMREE----EKLARDVYLTLYNKWKLQ----IFKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKFEELYKKLVEKGDKSEVDALKVGAIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNKEEYEEIISSSTE....................................... 185
73 -14.2003q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  10  11.....QPISEEEKEGLIEMREE----EKLARDVYLTLYNKWKLQ----IFKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKFEELYKKLVEKGDKSEVDALKVGAIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSN.................................................... 160
74 -14.2003b5o_A mol:protein length:244 CADD-like protein of unknown function  ali model follow..  8  31..QMLSQASFAQIAYVMQQYSIFPKELVGFTELARRKALGAGWNGVAQELQENIDEEMSHYTLLADGLEEGLGVAVKNTMPSVATSKLLRTVLSLFDRQVDYVLGATYAIEATSIPELTLIVKLVEWLHEGAIPKDLQYFLDEWEIEHEAGLRTSVAAYI-QPEEFGEFAAGFRAMIDAMQVWWQEL........................... 225
75 -13.7003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  11  1.......MGMQGDPDVLRLLNEQLTSELTAINQ-SKMQDNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLRE-----------QFEADLAIE---VLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMDK..................................................... 145
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.