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Query: 5uxi_A mol:protein length:234 Aldehyde decarbonylase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQQLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYGLIGAPGLast
1 -86.2005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model  100  1MQQLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFSTRDIMRLSAYGLIGAPG 234
2 -75.6005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  62  1MNRTAPSSAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAIAAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRDVMKMSARGLASAP. 233
3 -75.2004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  73  1MPELAV-RTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFSTREIMRMSSYGLAG... 230
4 -74.8004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  72  4....LEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENIGFTTREIMRMSAYGLAAV.. 231
5 -73.7004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  58  15.STVGSSEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS... 244
6 -72.5004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  58  15.STVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAALVS... 244
7 -70.6005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  40  2........TQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAVAAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEAVEARRLAAARMVGS.. 228
8 -68.3005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  77  30....LEASPTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNNRDIMRMSAQGLAA... 256
9 -65.8005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  66  32......ATAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAAAAA 259
10 -49.4004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  12  6........RSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWED-VIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNK--NRMQGAINFWFPRAVEMLHMTWSLLNISDLTKNDLINGYIKTTNEELKKCGYNEVNYDKALHYN-----V 233
11 -46.4005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  8  3........KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVR-LPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLAILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR-----VEELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKI.................... 209
12 -44.7003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  12  20........EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAMLQDAINRFWWPALMMFGPNDDNWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPD............ 246
13 -43.7004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  13  47..DFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALAEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTAESGYYTFRQIYKPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDEELFIRYMDELWPHVIGYVDYLTERTYALEIDYDLLRHYVIKQFNLRKKQISRTK................ 295
14 -43.2004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  11  23........EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKLLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWAD-IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQAQRQMLQDAINRFWWPALMMFGPNDDNWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPD............ 249
15 -41.8003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  13  41..DFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELSPAAQVRASVTYNHIVEGMALTGYYAWHKICVPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDTVFETRMNELIPLALRLIEEGFALYPPFDLSKDDFLQYSTDKGMRRFGTISNAR--GRPVAEIDVDYSP. 297
16 -39.4003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  12  1.............MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLANIGLDLLGQARNFLSYAAELAGEGDEDTLARDERQFSNLLLVEQPNGNFAD-TIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGDVSGQKMQQAINKLWRFTAELFDADEIDIALIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKG... 228
17 -38.2002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  10  98SFGFCEKRNLLTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAAMDDEMWQPMRKLVEDTLVVDDWFELTLVQNILIDGMMYPLVQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNLQKWIDHWEPQAYEALKPLAEAS-----VGIDGLNEARAELSARLKKFELQSRGVS............ 332
18 -37.6004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  13  2................NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLANIGLDLLGQARNFLSYAAELNGCGDEDTLGRDERQYSNLLLVEQPNGNFAD-TIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGELSNRKMQQAVDNLWRFTGELFLADEVELSLIAVDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGGKQG... 226
19 -37.3001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  13  77LLDGLTRLGAGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASALNTDLNNAFWTQQKYFTPVLGYLFEYGSKNRWVSEDWGGIWIGRLGKYGVESPR.............. 325
20 -35.0001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  14  82LQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDSAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVVYEDWGGIWIGRLGKYGVESPR.............. 330
21 -34.8003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  10  72VKAALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFSNEWAAIAAKHFFDDIITGRDAISVAIMLTFSFETGFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPKEFMYEWIIGQFERSLIDLGLDKPWYWD........... 318
22 -34.7003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  10  44..DLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK................ 275
23 -34.2001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  11  72IKAALERDGFVDRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWTNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDL..... 324
24 -33.8003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  11  94......GQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVLQKYLNFHYSVTSDLYGAEISSNAATGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSA... 355
25 -33.6001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  6  100LFDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPAITNCATYETADHLRWLTHTAYRTRELANCYPDVENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGN--REVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASRYVRQMMGL.................. 330
26 -33.1002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  9  68..DLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQTEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKEIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPK................ 298
27 -33.0002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  11  68..DLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK................ 299
28 -32.6003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  8  97LFDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPAISNCCILQTADSLRWLTHTAYRTHELSLTYPDAEKEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENNHAVIEGWIEKWRPLADRAAEAYLSMLSSDILPAQ--YLERSTSLRASILTV.................... 327
29 -32.0002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  10  51..DLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADKEATYGERVVAFAAVEGIFFSIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSK................ 282
30 -31.7001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  9  53.........DWDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRA---EKYTQVETLVYMAFYERCGAVFCRNLAAQIEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGADIEAYRDKLQNVADA-KPQLRQLISDRITAWGLAGEPSLKQFVTG...... 275
31 -31.4002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  11  76FDAFAQNNGHQNISDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLDRVWYLSVPKSFFDDARSAGPF-EFLTAISFSFEYVLTNLLSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKEVYYEQNGGALFKDLERYGIRPPKYQDVANDAK..... 328
32 -31.1004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  13  32..AVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIAGIITSYYRRLLKPEVTKKELYMAMVASVFLESYLFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEP................ 272
33 -30.7006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  14  50..DFTADTQDFHALSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVIRRRV-TKSQDNRKYMVSLILFSILIENVAILLSFTRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPALVRETVKDSIAVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPV................ 290
34 -30.5003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  13  37..PLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENKAQIIQQHYRGDDPLKKKIASVFLESFLFYPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISEELKSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEP................ 269
35 -30.4002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  12  59..NMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNNPTPKTFLESIVYDVILEGLNFYFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWKIPGINPEDMETYISFIANKRAVQLGMEK................ 300
36 -30.1003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  11  70..DLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADRKSTFGERVVAFAAVEGVFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSK................ 301
37 -30.1002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  9  69..DLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKEIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK................ 299
38 -30.0001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  11  47..PVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPTMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEE-KAKIIMSYYNGDDPLKKKVASTLLESFLFYPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEEYKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEG................ 279
39 -30.0001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  12  37..PLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEE-KAQIILAHYVSDEPLKKKIASVFLESFLFYPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSEELKLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYEA................ 269
40 -29.9001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  12  42..PVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDSEENRNLQRKAEIVLQSYRGDEPLKRKVASTLLESFLFLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDELKDYTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYEA................ 274
41 -29.7004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  12  36..PLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNKAEIINEIYLNGTALEKKIASVFLETFLFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEKLKEWMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRYNANKALMNLGQDP................ 268
42 -29.6004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  71..PMGKDIELWKSLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGI-VMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYGILGLRASMFIDYVQHIADRRLERIGLKP................ 321
43 -29.6002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  13  20....................SLEELLGMAIKAEIGAREFYKSLAEKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE....................................................................... 165
44 -29.6002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  12  83..........FLAAEPHQRQRVIGYNERVIATEQLIAEPAFDLVMH-PLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKPQPELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARTIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFSALLLELNAAGIRGAEEIVGDLRSTAGGTRLVRDFSGARKMVEQLGLDDAVD 330
45 -29.6002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  11  1MQEKPQEPKVVGVEILEKSKKLVDKLVKATAAEFTTYYYYTILRMHLEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKD-PKEILKVLLEAEQCAIRTWKEVCDMTDPRTYDLAQRILQEEIEHEAWFLELLYGR........................................................................... 170
46 -29.5004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  13  1MVFHKKEP--HVVNIGEANPRFAQLLLEQFGGATGELSAALQYWVQSAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKS-SQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSDEGTKQTLVHLLTREISHTQMFMKALDSLGKLT....................................................................... 181
47 -29.5001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  9  63..ELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAANDDSLYAERLVAFAAKEGIFQAMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEK................ 293
48 -29.3006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  9  63..PVSNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIEINTETLQERAKALIPYYVNDDPLKSKVAAALM-PGFLLYPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSAEMKEFVFKLLYELIDLEKAYLKELYEDFGLADDAIRFSVYNAGKFLQNLGYDS................ 295
49 -29.2006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  8  67..PVSNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQILTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIE-DNEALQARPKALIPFYTADDPLKSKIAAALM-PGF-YLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEMKQFVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYES................ 299
50 -28.8001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  9  109..DLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQETEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQVREIITNAVRIEQEFLTEALPV-KLIGMNCTLMKQYIEFVADRLMLELGFNK................ 340
51 -28.5001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  12  54..DVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................ 323
52 -28.3002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  14  4...................YTLAEFLAHAIALETEAAERYVELADMMLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSDPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS....................................................................... 153
53 -28.2001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  19  1..........MAGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGK------------VVTGQAVPVIYESDADQEDATIEAYSQFLKVCDIVTARLFERIIEEEQAHLTYYENIGSHI........................................................................... 146
54 -27.8001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  15  1.............MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLNSDAQKTVKKIIDQEKEHLRKLLEMKRES........................................................................... 150
55 -27.8005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  8  52..........WERLSDETRSRLVAYNRNTVLIEQRIANPAFELVIG-QQLELAVAQAMVDEQYHTLMHINGSAVTRRMRRSDFSDRITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEAFTTWESIVAFEGVPGWEKAAAEVREAQGGTHLVQDHSGIHTLLTEMDVLDQV. 299
56 -27.6001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  12  54..DVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRYCSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................ 323
57 -27.6001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  12  54..DVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFCSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................ 323
58 -27.6001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  11  128..DLSKDIHDWNRMNENERFFISRVLAFFAASDGIVNENLVENFSTEPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKK................ 360
59 -27.6003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  15  9..............TARYNRFVADLFGMMAYGELSAFERFSADARYSPTLRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAM--LPFQAAVDYFHSRTRPADWYESLMKAYVID-TVSADFYRAISRYVDAGTRDVIEQIQASD-ETTEVLRERLRSALADDPRRLALWGRRLLGEALTQAQRVSYEHAFLGSLIGGEDSAAAKELVSGLIA-GLAEKHSKRMTQLGLTG... 225
60 -27.6002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  14  5...............SHDVKELIEGLNEDLAGEYSAIIMYNHNAATVQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLR-------------VKQAEDVREMLEYARQSEYETIKRYEKRKEQAMTELVVKLEDMIADETNHMEELDRLLNDK........................................................................... 144
61 -27.5001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  12  54..DVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLSIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL................ 323
62 -26.8003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  18  1MAMGTLEAQTQGPGSMKGEPKVIERLNEALFLELGAVNQYWLHYRLLTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSP------------LRIGQNVKEVLEADLKGEYDARASYKESREICDYVSKQLFDELLADEEGHIDFLETQLDLL........................................................................... 156
63 -26.4004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  14  5.............MAQLKGSKTEENLKYAFAGESQANRRYLYFASKANDIAALFRSTAEGETGHAHGHLEYLEAVGDPA-----------------TGLPFGTSRQNLQSAIAGETHEYTDMYPGMAKTAFEEIANWFETLAKAERSHANRYTKALDGL........................................................................... 142
64 -26.0002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  15  1MAKESVKIL----QGKLDVKSLIDQLNAALSEEWLAYYQYWVGALVVADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKK------LARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFTDYTTCDIAKHILAEEEEHEQDLQDYLTDIARMKESFLKK................................................................. 170
65 -25.8002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  17  6................QGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................... 145
66 -25.7003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  15  2................QGDAKVIEYLNAALRSELTAVSQYWLHYRLQGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNP------------LRIGQTLRETLDADLAAEHDARTLYIEARDHCDYPSKMLFEELIADEEGHIDYLETQIDLM........................................................................... 141
67 -25.6001jku_A mol:protein length:266 pseudocatalase  ali model follow..  10  1MTRKLQYNAKPDRSDPIMARRLQESLG--QWGETTGMMSYLSQGWASEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGI..................................................................... 198
68 -25.6005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  18  2................QGDPEVIEFLNEQLTAELTAINQYFLHAKLQTKLAKYTRAESFDEMRHAEVLTDRILLLDGLPNYQRLFH------------VRVGQSVTEMFQADREVELEAIDRLRRGIEVMDITSANVFEAILADEEHHIDYLETQLDLI........................................................................... 141
69 -25.5003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  15  2................QGDPDVLKLLNEQLTSELTAINQYFLHSKMQTELAEHTRAESFEEMRHAETITDRILLLDGLPNYQRLFS------------LRVGQTLREQFEADLAIEYEVLERLKPGIVLCDATSARLLEQILADEETHIDYLETQLQLM........................................................................... 141
70 -25.5003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  16  1.............MGMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................... 143
71 -25.4003sid_A mol:protein length:180 Symerythrin  ali model follow..  20  24...................NNTDANAASSIEVEYECDCMYPTFAEIAPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEA--STIESQIDAVASDSRGLRRALETALEVETIESQTYPAFAKLANMEVATAFEAIVKSETKHANWVKRALENLLEVA....................................................................... 180
72 -25.4004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  51..ALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHVDGHQLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQDDEISLFKAMVASVYLESFLFYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEELREFAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRYNANKALMNLGFDP................ 290
73 -25.1001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  17  2................KGDAKVIEFLNAALRSELTAISQYWVHFRLQAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDP------------LRIGEGPRETLECDLAGEHDALKLYREARDYCDIVSKNIFESLITDEEGHVDFLETQISLY........................................................................... 141
74 -24.9004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  20  2................KGDQKVIEYLNRGLRSELTAVSQYWLHYRMLKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDP------------LRIGQTVKEVLESDLAAEREARALYQEGAAYADFPSKNLFEELMGDEEHHIDFLETQLDLV........................................................................... 141
75 -24.7002cwl_A mol:protein length:302 manganese-free pseudocatalase  ali model follow..  12  1MFLRIDRLQIELPMPKEQDPNAAAAVQALLFGEMSTLMNYMYQSKALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPESAPLGFAKDVRN-LILDLLHNFFLEVAARTHKLRVYEMTNPVAREMIGYLLVRGGVHAAAYGKALESLTGVEMTKM................................................................... 207
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.