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Query: 5vsl_A mol:protein length:318 Radical S-adenosyl methionine domain-containing protein 2, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GKEQPQVRGELEETQETQEDGNSTQRTTPVSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKQAGLEKINFSGGEPFLQDRGEYLGKLVRFCKEELALPSVSIVSNGSLIRERWFKDYGEYLDILAISCDSFDEQVNALIGRGQGKKNHVENLQKLRRWCRDYKVAFKINSVINRFNVDEDMNEHIKALSPVRWKVFQCLLIEGENSGEDALREAERFLISNEEFETFLERHKEVSCLVPESNQKMKDSYLILDEYMRFLNCTGGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYVWSKADLKLDWLast
1 -101.0005vsl_A mol:protein length:318 Radical S-adenosyl methionine domain-containing protein 2  ali model  100  1GKEQPQVRGELEETQETQEDGNSTQRTTPVSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKQAGLEKINFSGGEPFLQDRGEYLGKLVRFCKEELALPSVSIVSNGSLIRERWFKDYGEYLDILAISCDSFDEQVNALIGRGQGKKNHVENLQKLRRWCRDYKVAFKINSVINRFNVDEDMNEHIKALSPVRWKVFQCLLIEGENSGEDALREAERFLISNEEFETFLERHKEVSCLVPESNQKMKDSYLILDEYMRFLNCTGGRKDPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYVWSKADLKLDW 318
2 -80.8006b4c_A mol:protein length:298 Viperin  ali model follow..  53  2....................GRVRTGQVPVSVNYHFSRKCNKECLFCFHTATTSHVEKPENAKRGLTLLKQAGMKKINFAGGEPFLYPKF--LGEMIDFCKETLQLESVSIVTNGSLVKEQFLQKHGRNIDILAVSCDSFNEATNIKIGRGSG--DNVQKLYEIGSWCQKYDIKFKLNTVVNKFNHLEDMNDHLNALQPFRWKCFQVLIVTGENDSDKTLRNAHSLTISDDEFDRFCERHSSQTCLVPEPNRLMAKSYLILDEYMRFLDRNGQQ--PSKSILEVGVQQALQAVFWDEEAFVERGGIYDWNKSSKDLEW 298
3 -56.7001tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A  ali model follow..  16  2.................VEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRD---LDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNI---KATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKD---KHIEIRFIEFMDVGNDNGWDFSKV-VTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQLITSVSQSFCSTCTRARLSSDGKFYGCLFTVDGFNVKAFIRSGVTDEELKE. 303
4 -44.1006c8v_A mol:protein length:394 Coenzyme PQQ synthesis protein E  ali model follow..  16  19..........................PAPVGLLAELTHRCPLRCPYCSNPDRRSAELDTQTWLRVLTEAAGLGVLHVHLSGGEPTARPD---IVEITAKCAELGL--YSNLITSGVGGALAKLDALYDGLDHVQLSVQGVDAANAEKIG---GLKNAQPQKMQFAARVTELGLPLTLNSVIHRGNIHEGFIDLAVKLGAKRLEVAHTQYYG------WAYVNRAALMPDKSQVDESIRIVEAARERLKGQAGGWGRKLMNVTPQGKVLPCHAAETIPGWYVTDHALGEIWTK.......................... 297
5 -43.6005v1q_A mol:protein length:459 Radical SAM  ali model follow..  14  103...........NARKHVAKLKKHNILSFPLELVIYPSMYCDLKCGFCFLANRERNAKPAKDWERILRQAKDNGVLSVSILGGEPTRYFD---IDNLLIACEELKI--KTTITTNAQLIKKSTVEILAKKYITPVLSLQTLDSKLNFELMGVR-----PDRQIKLAKYFNEVGKKCRINAVYTKQSYEQELVDFCIENKIDRFSVANYSEVTGYTKIKKKYDLADLRRLNEYVTDYITQREANLNFATEGYGCRAKYTKMEIMSNGDILPCIAGVNQTKQNAFEKDLLDVWYD.......................... 403
6 -36.0004k36_A mol:protein length:392 Anaerobic sulfatase-maturating enzyme  ali model follow..  18  6..............................LLIKPASSGCNLKCTYCFYHSKSYGIMRDEVLESMVKRVLNEANGHCSFAGGEPTLAGLFEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDG-PKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARH-VNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYS---LKPKDYTKFLKNLFDFWYEDFLNGNRVSTCQFVVESDGSVYPCDFLDKWRLGNIQDMTMKELFET.......................... 300
7 -35.4005wgg_A mol:protein length:453 Radical SAM domain protein  ali model follow..  14  79...........SEDPYKEYVSSMDRKSVVKALCLHISHDCNLRCKYCFASTGQRNMMSLEVGKKAIDFLISESGNEIDFFGGEPMM--NFDVVKGIIEYARQKE---RFTLTTNGLLLNDENIKYINENMQNIVLSIDGRKEVNDRMIDGSGCYDDILPKFKYVAESRNQDNYYVRGTFTRENMDFSNDVLHLADE----GFRQISVEPVVAAKDSGYDLRE-EDLPRLFEEYEKLAYEYVKRCIVKRLTGCGSGHEYLAVTPEGDIYPC................................................ 365
8 -34.5002yx0_A mol:protein length:342 radical sam enzyme  ali model follow..  12  48......LKKSLTEGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPMGTELPQPWDDPAFIVEESIKANPTHAAISSGEPMLYPY---MGDLVEEFHKRGF--TTFIVTNGTIPEREEMIKEDKLPTQLYVSITAPDIETYNSVNIPMI-PDGWERILRFLELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNM--PSHQDIREFAEALVKHLPGYHIEDEYEPSRVVLIMRD...................................................... 326
9 -34.2006djt_A mol:protein length:331 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase  ali model follow..  16  38.KLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSVIWCQQNCIFCWRVLSQIKEPKWEEPEVVYEKILAMHKRIIMSLSGEPTLYPY---LDELIKIFHKNGF--TTFVVSNGILTDV----IEKIEPTQLYISLDAYDLDSYRRICG--GKKEYWESILNTLDILKEKKRTCIRTTLIRGYN--DDILKFVELYERADVHFIELKSYMHVGYSQKRLK--KEDMLQHDEILKLAKMLDENSSYKLIDDSEDSRVALLQNENRKI................................................... 321
10 -32.8004m7t_A mol:protein length:270 BtrN  ali model follow..  14  1..........MGSSSSGLVPRGSHMDKLFSMIEVEVNSQCNRTCWYCVSKRKETGEMDPALYKTLMEQLSSLDAGRISFHFGEPLLCKN---LDLFVGMTTEYIPRARPIIYTNGDFLTEKRLQTLELGIQKFIVTQHAGAKHKFRGVYDQLAGADKEKVVYLDHS........................................................................................................................................................ 159
11 -32.0004m7s_A mol:protein length:269 BtrN  ali model follow..  15  2.........................DKLFSMIEVEVNSQCNRTCWYCVSKRKETGEMDPALYKTLMEQLSSLDAGRISFHFGEPLLCKN---LDLFVGMTTEYIPRARPIIYTNGDFLTEKRLQTLELGIQKFIVTQHAGAKHKFRGVYDQLAGADKEKVVYL........................................................................................................................................................... 142
12 -25.3005tgs_A mol:protein length:263 7-carboxy-7-deazaguanine synthase  ali model follow..  17  45....................................TAGCDYSCSWC-SAKKDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENN------RAALETQGTV------QDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQE--------NDRQHAVSLKVVIFNDEDLEFAKTVHKRYPGIPFYL.................................................................................................................. 201
13 -22.9004njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  13  10.PRGSHMTYAVKEIFYTLQGEGANAGRPAVFCRFA----CNLWSGRE-DGENGGKFKDADALVATIAGLWPAAHRFVVCTGGEPMLQLDQPLVDALHAA--------GIAIETNGSL-------PVLESIDWICVSPKADAPLVVTKGNELKSRDLNTKLAIDWCKRHPQWRLSMQTHKYL......................................................................................................................................... 221
14 -21.9003t7v_A mol:protein length:350 methylornithine synthase PylB  ali model follow..  19  37.......KEGLERLYSAARKVRDHYFGNRVFLNIYFSTYCKNQCSFCYYNCRNEYRLTMEEIKETCKTLKGAGFHMVDLTMGEPYYYEDPNRFVELVQIVKEELGL--PIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFA----KQQGYCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRV............................................................................................................... 236
15 -20.4004jy8_A mol:protein length:358 FEFE-HYDROGENASE MATURASE  ali model follow..  13  39.......RGFNEALFKLADEIRRKYVGDEVHIRIEFSNVCRKNCLYCGLRRDNKNLMTPEEIVERARLAVQFGAKTIVLQSGE---YYMPDVISDIVKEIKKMGVAVTLSL---GEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPD............................................................................... 272
16 -20.3005fep_A mol:protein length:358 [FeFe] hydrogenase maturase subunit HydE  ali model follow..  13  39.......RGFNEALFKLADEIRRKYVGDEVHIRIEFSNVCRKNCLYCGLRRDNKNLMTPEEIVERARLAVQFGAKTIVLQSGE---YXMPDVISDIVKEIKKMGVAVTLSL---GEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPD............................................................................... 272
17 -19.6004rtb_A mol:protein length:477 HydG protein  ali model follow..  13  88.........................KRIVLFAPLYLSNICINNCSYCSFRRENKELLSLEEAVDEAKAIREMGHTRILLVMGEEPEDKTLSYLEEIIPAIYSEVDIRRINVNI-APLTLKGYERLKKLKIGTYQLFQESYNPEVYREVHLDGPKTNFLWRLNAVERAIEAGIDDIGIGALFGLGDPLFELLGVIAHAD........................................................................................................................ 263
18 -19.1003c8f_A mol:protein length:245 Pyruvate formate-lyase 1-activating enzyme  ali model follow..  14  25...................................FFQGCLMRCLYCHNRDHGGKEVTVEDLMKEVVTFMNASGGGVTASGGEAILQAEF--VRDWFRACKKEGI--HTCLDTNGFVRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSN-----HRTLEFAKYLANKNVKVWIRYVVVPSDDDDSAHRLGEFTRD....................................................................................................................... 189
19 -19.0004wcx_A mol:protein length:480 Biotin and thiamin synthesis associated  ali model follow..  9  64.......EDLLNEMFKVARYIKEEIYGNRIVIFLYVSNYCVNNCRYC-SNEQQRKKLTMEEVRREVEILEEMGHKRLAVEAGEDPVNCPIDYIVDVIKTIYDTKLKNGSIRVNIAATTVENYKKLKKVGIGTYVLFQETYHRPTYEYMHPQGPKHDYDYHLTAMDRAMEAGIDDVGLGVLYGLYDYKYETVAMLYHANHLEEKF-HTISVPRLRPALNISIDKFPYIVSDKDFKKLV------------------AVIRMAVPYTGMILSTREKPKFREEVISIGISQISAGSCTGVGGYHEEISKKGGSKPQFEVE. 366
20 -18.5002a5h_A mol:protein length:416 L-lysine 2,3-aminomutase  ali model follow..  16  100..............EDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRQSDDSMPMERIDKAIDYIRN-QVRDVLLSGGDALLVSD-ETLEYIIAKLREIPHVEIVRIGSRTPVITPELVNMLKKYHPVLNTHFNHPNE--------------ITEESTRACQLLADAGVPLGNQSVLLRGVNDHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTS................................................................................ 320
21 -17.4001r30_A mol:protein length:369 Biotin synthase  ali model follow..  13  34...EKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTLMEVEQVLESARKAKAAGSTRFCMGAAKNPHERDMPYLEQMVQGVKAMGLEACMTL---GTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIIT-----TRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLP..................................................................................................................... 230
22 -16.9005exi_A mol:protein length:331 Lipoyl synthase  ali model follow..  14  92....................................GDQCTRRCDFCQIDTGKPAELDRDEPRRVADSVRTMGLRYATVTARDDLPDGGAWLYAATVRAIKELNPSTGVELIPDFNGEPTRLAEVFESGPEVLAHNVETV-PRIFKRIRPAFTYRRSLGVLTAA----RDAGLVTKSNLILGLGETSDEVRTALGDLRDAGCDIVTI............................................................................................................... 260
23 -16.8004r33_A mol:protein length:420 NosL  ali model follow..  12  73..EDRSIGTAELQAAAEARCGA---PRLHTFVPLYTTNYCDSECKMCSMRKGNHRLSGRKEITEQLEILHHEGVRGVGFLTGEEDKHTRLASAFRIGWAIRTALDLGFERVYFNIGSMEQDEIDVLGEDPVTMCVFQESYDRETYRRFTSVGVPKADFDRRVVSFDRWLDAGYRVNPGVLVLHDDLSAELVSLVAHGD........................................................................................................................ 283
24 -16.7004u0o_B mol:protein length:296 Lipoyl synthase 2  ali model follow..  10  60....................................GPTCTRACAFCQVEKGHAAAVDPEEPTKIAAAVATLGLRYVVLTARDDLPDQGAGQFVATMAAIRQRCPGTEIEVLSPRLSQRDCIAQIVAAQPACYNHNLETV-RRLQGPVRRGATYESSLRVLATVKEL--NPDIPTKSGLMLGLGETEAEIIETLKDLRRVGCDRLTL............................................................................................................... 237
25 -16.3001olt_A mol:protein length:457 OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE  ali model follow..  17  46......................ARYPERPLSLYVHIP--CHKLCYFCGCNKIVTRQQHEQEIVHRAPLFAGRHVSQLHWGGGTPLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFT---STNIDLIYTPESFAFTLKRVAE-LNPDRLSVFNYAHLPTIFAAQRKIKDAD.............................................................................................. 259
26 -16.1005l7j_A mol:protein length:459 ELP3 family  ali model follow..  11  1.................MKKLSRTISGVTPVAVMTKPLPCPGKCIYCVLRAKSCEYQAYKQVALRLRIIQDMGKVELIIMGGTFLSAD-ITYQYGFIKDCYDQHRCVGLCIETRPDICGKAEIQRMIDGTTRVELGVQMLDDDIYKLVERGHR----VSDVAEATCLLREYGLKVHYHWMPSPEKDLALSRMVFERFCPDGLKLYPTMVVEGTILEQWWKEGRYTPYPNGTMTGLIAD................................................................................ 264
27 -15.3005l7l_A mol:protein length:446 ELP3 family, ELP3 family  ali model follow..  11  1.................MKKLSRTISGVTPVAVMTKPLPCPGKCIYCVLRAKSCEYQAYKQVALRLRIIQDMGKVELIIMGGTFLSAD-ITYQYGFIKDCYDQHRCVGLCIETRPDICGKAEIQRMIDGTTRVELGVQMLDDDIYKLVERGHR----VSDVAEATCLLREYGLKVHYHWMPSPEKDLALSRMVFERFCPDGLKLYPTMVVEGTILEQWWKEGRYTPYPNGTMTGLIAD................................................................................ 264
28 -14.3003rf9_A mol:protein length:404 Ribosomal RNA large subunit methyltransferase N  ali model follow..  11  87.RSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTQQGFNRNLRVSEIIGQVWRAAKIPITNVVMMGGEPLL--NLNNVVPAMEIMLDDFGFRRVTLSTSG--VVPALDKLGDMIDVALAISLHAPNDEIRDEINKKYNIETFLAAVRRYLEKSNANQGRVTIEYVMLD-HVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRI--DRFSKVLMSY.............................................................................. 337
29 -13.5004fhc_A mol:protein length:368 Spore photoproduct lyase  ali model follow..  11  105.................................IPLATGCMGHCHYCYLQTTLGSKVNLDDIAQAQKYINERAPEITRFEAAC--IDHLTHSLKKAIEFIGATDYG-RLRFVTKYEHV-DHLLDARHNGKTRFRFSINS-RYVINHFEPGTSSFDGRLAAARKVAG--AGYKLGFVVAPIYRHEGWERGYFELFQEL......................................................................................................................... 274
30 -13.4004jc0_A mol:protein length:438 Ribosomal protein S12 methylthiotransferase RimO  ali model follow..  16  139..............................YAYVKISDGCDRGCTFCSSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAGIDL--YRKQALPDLLRRLNSLNGEFWIRVMLHPDHLTEEIISAMLELVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSI-IVGFPGETEEDFEELKQFVEEIQFKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFL.................................................. 386
31 -12.7003can_A mol:protein length:182 Pyruvate-formate lyase-activating enzyme  ali model follow..  15  7............................................................................VTFCGGEPLLHPEF--LIDILKRCGQQGI--HRAVDTTL-LARKETVDEVMRNCELLLIDLKSMDSTVHQTFC-DVPNELILKNIRRVAE--ADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAK................................................................................................ 144
32 -12.0006fd2_B mol:protein length:457 Putative apramycin biosynthetic oxidoreductase 4  ali model follow..  11  197..............................ITSINGSFGCPYPCRFYCPYPRKIRTYPVERIVAEFRQCAELGITAAVFR--DPVFSFHRDRTLELCQALKAADTGVPWWCETRIDRLDEEVVAALVAGCVGVEVGVESGDPDMQATAVRKR----NLDTVRKFHAVARKAGLKLVFLFLILPRETRMSIRRTFDFILELG..................................................................................................................... 368
33 -9.0505ul2_A mol:protein length:744 OxsB protein  ali model follow..  14  304..............................ALTLETSRGCDYRCTFCPRDRPLSVEQTLKQLDDILRAGKHFNIKPHIYMADEEFIGEEAQRIIDICEGLLKREEKIKFDFAARADSVYEPWHYCALAGADRIFIGVESGSNQQLKRYGKG-----TSEQNIIALRLVSALGINLRIGFIMQLMKGLDNLKENLDFLERTD..................................................................................................................... 497
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.