current user: public
If you have questions about the server, please let us know.

Query: 5w3j_B mol:protein length:457 Tubulin beta chain, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .
# Score Template Links and tools%idFirst MREIIHISTGQCGNQIGAKFWEVICDEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKTSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNHLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGFAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEATVEDDEEVDENGDFGAPQNQDEPITENFELast
1 -121.0005w3j_B mol:protein length:457 Tubulin beta chain  ali model  100  1MREIIHISTGQCGNQIGAKFWEVICDEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKTSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNHLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGFAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEATVEDDEEVDENGDFGAPQNQDEPITENFE 457
2 -120.0004ffb_B mol:protein length:463 Tubulin beta chain  ali model follow..  98  1MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDTRVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSVAPQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEATVEDDEEVDENGDFGAPQNQDEPITENFE 457
3 -117.0005mlv_I mol:protein length:448 Tubulin beta chain  ali model follow..  74  1MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDEDYEIEEEKEPLE.......... 447
4 -116.0001ffx_B mol:protein length:445 PROTEIN (TUBULIN)  ali model follow..  75  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEGEEDEA............ 445
5 -116.0001z2b_B mol:protein length:445 Tubulin beta chain  ali model follow..  75  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA............ 445
6 -116.0003ryc_B mol:protein length:445 Tubulin beta chain  ali model follow..  74  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGEDEA............ 445
7 -114.0005ubq_D mol:protein length:429 Tubulin beta chain  ali model follow..  76  1MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDIPPKGLKMAVTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT............................ 429
8 -114.0005Z4P Entity 4(prereleased)  ali follow..  77  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD.......................... 431
9 -114.0006e88_B mol:protein length:426 Tubulin beta-2 chain  ali model follow..  76  1MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICYRTLKLTNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLSAKGTQAYRALTVAELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQ............................... 426
10 -114.0005n5n_B mol:protein length:426 Tubulin beta chain  ali model follow..  78  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ............................... 426
11 -114.0005mlv_E mol:protein length:455 Tubulin alpha-1 chain  ali model follow..  40  1MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMDNEMYEADEE................. 454
12 -114.0005ij0_B mol:protein length:426 Tubulin beta-3 chain  ali model follow..  78  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ............................... 426
13 -113.0002xrp_B mol:protein length:452 TUBULIN ALPHA-1D CHAIN  ali model follow..  40  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEEGEEY............... 452
14 -113.0003j8x_A mol:protein length:451 Tubulin alpha-1B chain  ali model follow..  40  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEE................. 450
15 -113.0003du7_A mol:protein length:449 Tubulin alpha-1C chain  ali model follow..  39  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSYEDEDEGEE................... 448
16 -113.0001z2b_A mol:protein length:448 Tubulin alpha chain  ali model follow..  40  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGIDSYEDEDEGEE................... 448
17 -113.0004ffb_A mol:protein length:447 Tubulin alpha-1 chain  ali model follow..  41  1MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGTPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDYIEVGADSYAEEEE...................... 446
18 -113.0005Z4P Entity 3(prereleased)  ali follow..  40  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV........................... 440
19 -112.0006e88_A mol:protein length:434 Tubulin alpha-2 chain  ali model follow..  40  1MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDVERPSYTNLNRIISQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQMVKCDPRHGKYMAVCLLYRGDVVPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVG............................... 434
20 -112.0002bto_A mol:protein length:473 TUBULIN BTUBA  ali model follow..  32  3VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSKLGESSSGSYVPRAIMVDLEPSVIDNVKATS-GSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMRFSGFLTVEISELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAM-REKLPLTYWIPTAFKIGYVEQPGISHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEESGAKAKVQDSAGDTGMRAAAAGVSDDARGS 462
21 -112.0005ubq_C mol:protein length:441 Tubulin alpha chain  ali model follow..  40  1MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIETAE.......................... 441
22 -111.0002btq_B mol:protein length:426 TUBULIN BTUBB  ali model follow..  36  1VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKL-NRSPNYMDLNNIIALIVSSVTASLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNFTAAIDWQQGVYLAASALFRGDVKAKDVDENMATIRKSLNYASYMPASGGLKLGYAETAPEGFASSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATLAQSYRDAS............................... 426
23 -109.0005flz_C mol:protein length:473 TUBULIN GAMMA CHAIN  ali model follow..  25  3.GEIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTDDDTKPFFRENCRNKFTPRAIMMDSEPSVIADVENTFRGFFDPRNTWVASDGASAGNSWANGYDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPARS-SEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMTKLQQRIKFPSWSSVNIGRRSPYLPLQPNENEVSGMMLSNMSTVVNVFENACNTFDKVFAKGAFLNNYNVGDLFQDEFAESREVVQSLMEDYVAAEQDSYLDDVLVDDENMVGELEEDLDADGDH.. 470
24 -108.0003cb2_A mol:protein length:475 tubulin gamma-1 chain  ali model follow..  33  3.REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASRKTTVLDVMRRLLQPKNVMVSTGRTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDESREIVQQLIDEYHAATRPDYISWGT-QEQVDVDGGQKLISEEDLLLE 469
25 -105.0005nd4_A mol:protein length:412 Tubulin alpha chain  ali model follow..  40  1.RECISIHVGQAGVQIGNACWELYCLEHGIQPDG------------------------HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS............................ 412
26 -28.5003zid_A mol:protein length:373 TUBULIN/FTSZ, GTPASE  ali model follow..  14  1MLNVLMLGVGQCGNRILDAVNRQ------------------AFGGSRLAKYYSKQRFPSRVETIAINTAINDLKELKFTAAKDRL----HVPNLHGVGAN------SKGKQGFWENQEMILEEIEKRGDFDLIFVMTSVSGGTGSSFSPLMIHELKKRYKNATIVPIAVLPFREEGTIYLQ--NAAFCLREMIEEADGMILVDNQYLKRFSGDIAS----AYDRINTMVAQRLLFLIEALDSEMLSVTDLGDFKTVMNGGLRM----------LGYYQADKKSPSIRAAIKNSLREVGLLYPANVDAGEAGRAMIVIQGS------REYLNVDEITKEIESLTETIGHVFKGIVIKKGEPRVLSVLSLERAPGLVELYEKAKWAIQEERERKD----------ARSELYEAFEQINDLEEIY................................... 367
27 -21.5003v3t_A mol:protein length:360 Cell division GTPase FtsZ, diverged  ali model follow..  14  5.NKIVFAPIGQGGGNIVDTLLGI--------------------------------------NALFINTSKKDLDSLKH-------KHTYHIPYAEGCGKERKKA-VGYAQTYYKQIIAQIMEKFSSCDIV---IFVATMAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPKAT--EDIDEHMNAIACWNDIMRSTNSIYLLDNN------------KREKESDINKEFATLFNDFMNMSESHAEGVVDEDEISKLL........................................................................................................................................................................................................ 207
28 -20.7002xkb_A mol:protein length:427 FTSZ/TUBULIN-RELATED PROTEIN  ali model follow..  12  24..RWGVIGAGQKGNKEADLFAGY-----------------------------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRI----HFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI-FMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL-----------RFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLGEYK-----DEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQEQLRAEAQRKQDEEKVDISFAT........................................... 421
29 -20.1004ei7_A mol:protein length:389 Plasmid replication protein RepX  ali model follow..  13  17..KFGFLGLGMGGCAIAAECANK----------------------------TQIKNNKYPYRAILVNTNSQDFNKIEIKNTGNV-RKIQLEGYEQGAARNPQVG-EEAFVKHETKIFEAVKQEFEDRDFI---WITCGLGGGTGTGALLKAIEMLYEH--DYNFGLLLTLPRDAEAKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANTSYSNKYIADALNLVTSSFTPFSDTHFDASEFAQVI-------VLSLAKLELKSNQLDTENPLGYLTQLGNALEKGVLYDTEREELESAKKSALSIVTSPLRAGRLYNFSFLNQKERTPYVDERPIAPYVNKHTTKKEEDIVKFYSVVAGLPLPKRVSDIIDEITRIKEER................................................................. 380
30 -20.1004b45_A mol:protein length:349 CELL DIVISION PROTEIN FTSZ  ali model follow..  14  2..KTVLIGVGQAGGKLASALQSF----------------------------DRQTGFGAVLDAVAVNTAKADLQSLPV---------ETVLIGQDRVNGHGVGGDNELGAAVMESDQTEVMSALDG-AEAESIFVVAGLGGGSGSGGAPVLAKALAGVY-DVPVYVLGILPGADEGALYQV--NAGRSLKTVAREADAVLLVDNDAFRSAGESM----SEGYDAINEAIARRVGLLLAATEGVGESVVDTSEVINTL-------IAALGYASAEASPNAEDNINAVMSTTRRAVLTGTSLPDASDADAALVVIA------------PDTIPRKGVERARRWVEDETGSMQVRGGDFPLESGRLASLVLLGGVERSERVESFMERAREAIDKAETEPREDPKG....................................................... 349
31 -19.9003m89_A mol:protein length:427 FtsZ/tubulin-related protein  ali model follow..  12  38..RWGVIGAGQKGNKEADLFAGY-----------------------------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRI----HFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI-FMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL-----------RFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLGEYK-----DEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEK.................................................................. 412
32 -19.4003j4t_F mol:protein length:490 FtsZ/tubulin-related protein  ali model follow..  11  30..RWGVIGAGQKGNKEADLFAGY-----------------------------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRI----HFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI-FMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL-----------RFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLGEYK-----DEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQE-----QLRAEAQRKQDEEKVDISFATNRVQKNTFNPYNKNQGFGGASRFSGGKNSAFKRQTS.. 463
33 -19.4004b46_A mol:protein length:395 CELL DIVISION PROTEIN FTSZ  ali model follow..  18  2..KLAMIGFGQAGGKVVDKFVE----------------------------YDRERNAGIVRAAVAVNSAKADLLGLKNIPKDQRVLIGQSRVKGHGVGAD------ELGAEIAEEDIDEVQGAIDSVHEVDAFLVVSGLGGGTGSGGAPVLAKHLKRIY-TEPVYGLGILPGSDEGGIYTL--NAARSFQTFVREVDNLLVFDNDAWRKTGESV----QGGYDEINEEIVNRFAGEVQDGQEVAESVVDSSEIINTL........................................................................................................................................................................................................ 223
34 -16.7003zbp_A mol:protein length:333 PHIKZ039  ali model follow..  13  6..KTRIYFCGGAGFRIGELFHGY--------------------------------------DVCYIDTSVQNKHKHNTDDNTIIIEADT-RKRAIGMGKD------KAAAELISAHIPAIAHHFPAGDTN---IVVYSMGGASGSTIGPSLVSHLQQQGEVVVSVVIGSYDSDISLRNSSGSLKTFEGVSSVSKVPMIINYHENV------------EGIPQSMVNQNILEVLNALVILFN-QEHQSLDLMDITNWA........................................................................................................................................................................................................ 209
35 -14.7003j5v_a mol:protein length:320 PhuZ201 subunit  ali model follow..  16  9..KVCLIFAGGTGMNVATKLVDL--------------------------------------AVHCFDTCDKNVVDVHRS------VNVTLTKGTRGAGGN------KVILPLVRPQIPALMDTIPEADFY---IVCYSLGGGSGSVLGPLITGQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVPNT------------QGRSYESINDEIAEKIRKVVL-LVNQNHGRLDVHDVANWV........................................................................................................................................................................................................ 200
36 -13.7002rhh_A mol:protein length:325 Cell Division Protein ftsZ  ali model follow..  17  1MASIKVIGVGGGGNNAVNRMIE---------------------------------NEVQGVEYIAVNTDAQALNLSKA--------EVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMV---FVTAGMGGGTGTGAAPVIAQIAKDL-----ALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLE-AFREADNVLRQGVQGISDLIATPGLINLDFADVKTIM........................................................................................................................................................................................................ 208
37 -13.7004e6e_A mol:protein length:314 Cell division protein ftsZ  ali model follow..  18  11..VIKVVGIGGGGVNAVNRMIE---------------------------------EGLKGVEFIAINTDAQALLMSDA--------DVKLDVGRELTRGLGAGANPDVGRKAAEDHREEIEEVLKGADMV---FVTAGEGGGTGTGGAPVVANIARSL-----ALTIGVVTRPFSFEGKRRATQAEAGIAMLREEVDTLIVIPNDRLLSISDRQVSVLD-AFKAADQVLLSGVQGITDLITTPGLINLDFADVKSVM........................................................................................................................................................................................................ 216
38 -13.5003wgj_A mol:protein length:308 Cell division protein FtsZ  ali model follow..  17  5..TLKVIGVGGGGNNAVNRMID---------------------------------HGMNNVEFIAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIATPGLINLDFADVKTIM........................................................................................................................................................................................................ 210
39 -13.4002r6r_1 mol:protein length:338 Cell division protein ftsZ  ali model follow..  20  9..KIKVIGVGGGGSNAVNRMYE---------------------------------DGIEGVELYAINTDVQHLSTLKV--------PNKIQIGEKVTRGLGAGAKPEVGEEAALEDIDKIKEILRDTDMV---FISAGLGGGTGTGAAPVIAKTAKEM-----ILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKD-AFKEVDSVLSKAVRGITSIVVTPAVINVDFADVRTTL........................................................................................................................................................................................................ 214
40 -12.7001fsz_A mol:protein length:372 FTSZ  ali model follow..  19  39..KITVVGCGGAGNNTITRLKM---------------------------------EGIEGAKTVAINTDAQQLIRTKA--------DKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMV---FITCGLGGGTGTGSAPVVAEISKKI-----ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNM----KLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVM........................................................................................................................................................................................................ 243
41 -12.5001w5f_A mol:protein length:353 CELL DIVISION PROTEIN FTSZ  ali model follow..  18  23..KIKVIGVGGAGNNAINRMIE---------------------------------IGIHGVEFVAVNTDLQVLEASNA--------DVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMV---FITAGFGGGTGTGASPVIAKIAKEM-----ILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETLHQGVKGISELITKRGYIRLTSRFARIESV....................................................................................................................................................................................................... 229
42 -12.1001rlu_A mol:protein length:382 Cell division protein ftsZ  ali model follow..  19  13..VIKVVGIGGGGVNAVNRMIE---------------------------------QGLKGVEFIAINTDAQALLMSDA--------DVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDEIEELLRGADMV---FVTAGEGGGTGTGGAPVVASIARKL-----ALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMD-AFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIM........................................................................................................................................................................................................ 218
43 -12.0002vaw_A mol:protein length:394 CELL DIVISION PROTEIN FTSZ  ali model follow..  18  13..VIKVIGVGGGGGNAVNHMAK---------------------------------NNVEGVEFICANTDAQALKNIAA--------RTVLQLGPGVTKGLGAGANPEVGRQAALEDRERISEVLEGADMV---FITTGMGGGTGTGAAPIIAEVAKEM-----ILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-AFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVM........................................................................................................................................................................................................ 218
44 -11.7002vam_A mol:protein length:382 CELL DIVISION PROTEIN FTSZ  ali model follow..  17  13..SIKVIGVGGGGNNAVNRMIE---------------------------------NEVQGVEYIAVNTDAQALNLSKA--------EVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMV---FVTAGMGGGTGTGAAPVIAQIAKDL-----ALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLE-AFREADNVLRQGVQGISDLIATPGLINLDFADVKTIM........................................................................................................................................................................................................ 218
45 -11.6004dxd_A mol:protein length:396 Cell division protein FtsZ  ali model follow..  16  13..TLKVIGVGGGGNNAVNRMID---------------------------------HGMNNVEFIAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIM........................................................................................................................................................................................................ 218
46 -11.5004m8i_A mol:protein length:400 Cell division protein FtsZ  ali model follow..  16  13..TLKVIGVGGGGNNAVNRMID---------------------------------HGMNNVEFIAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTAGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFGFEGRKRQTQAAAGVESMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIM........................................................................................................................................................................................................ 218
47 -10.6003wgk_A mol:protein length:390 Cell division protein FtsZ  ali model follow..  16  15..TLKVIGVGGGGNNAVNRMID---------------------------------HGMNNVEFIAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVGAGLDADVKTIMSN......................................................................................................................................................................................................... 220
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.