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Query: 5wie_B mol:protein length:532 Potassium voltage-gated channel subfamily A member 2,Potassium voltage-gated channel subfamily A member 2, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKLVPRGSMTVATGDPVDEAAAHPGHPQDTYDPEADHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIWSNFNYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREENLKTANSTLANTNYVNITKMLTDVLast
1 -128.0005wie_B mol:protein length:532 Potassium voltage-gated channel subfamily A member 2,Potassium voltage-gated channel subfamily A member 2  ali model  100  1MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKLVPRGSMTVATGDPVDEAAAHPGHPQDTYDPEADHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIWSNFNYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREENLKTANSTLANTNYVNITKMLTDV 532
2 -121.0006ebk_B mol:protein length:513 Potassium voltage-gated channel subfamily A member 2,Potassium voltage-gated channel subfamily B member 2 chimera  ali model follow..  98  3.............................ENLYFQGSMTVATGDPVDEAAAHPGHPQDTYDPEADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREENLKTANCTLANTNYVNITKMLTDV 505
3 -120.0002r9r_B mol:protein length:514 Paddle chimera voltage gated potassium channel Kv1.2-Kv2.1  ali model follow..  99  1............................MAGLVPRGSMTVATGDPVDEAAALPGHPQDTYDPEADHESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREENLKTANSTLANTNYVNITKMLTDV 504
4 -119.0002a79_B mol:protein length:499 Potassium voltage-gated channel subfamily A member 2  ali model follow..  92  1.....................................MTVATGDPVDEAAALPGHPQDTYDPEADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSNSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREENLKTANCTLANTNYVNITKMLTDV 499
5 -64.5005vms_A mol:protein length:548 Potassium voltage-gated channel subfamily KQT member 1  ali model follow..  18  6............................................................................................................................................................PRPTINLDPRVSIYSGRRPLLSRTNIQGRVYNFLERPTGWK-CFVYHFTVFLIVLICLIFSVLSTIQQYN--------------------------NLATETLFWMEIVLVVFFGAEYVVRLWSAGCRSKYARKPISVIDLIVVVASVIVLCV-----GSNGQVFATSAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDSGEYQFGSYADALWWGVVTVTTIGYGDKVPQTWIGKTIASCFSVFAISFFALPAGILGSGFALKVQQKQRQKHFNRQIPAAASLIQTAWRCYAAENPDSATWKIYIRKQSRNHHLMSPSPKPKKSAMVKKKKIRTERDEGSTDKM.. 360
6 -63.9002a0l_A mol:protein length:241 Voltage-gated potassium channel  ali model follow..  21  7...................................................................................................................................................................................GGRVRNIGDVMEHPLVELGVSY-------AALLSVIVVVVEYTMQLS--------------------------GEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALI----------EGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKILVGEPEPS........................................................................... 241
7 -56.2002a9h_A mol:protein length:155 Voltage-gated potassium channel  ali model follow..  22  3.........................................................................................................................................................................................................................................................................................................................GSSSGIEGRGRLIKHMPPMLSGLLARLVKLLLGRHGSALHWR----AAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVRHSEK..................................................................... 148
8 -52.6003pjs_K mol:protein length:166 Voltage-gated potassium channel  ali model follow..  20  1.....................................................................................................................................................................................................................................................................................................................................MPPMLSGLLARLVKLGRHGSALQWRAAGAA---------TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNR......................................... 159
9 -52.3001f6g_A mol:protein length:160 VOLTAGE-GATED POTASSIUM CHANNEL  ali model follow..  22  1..................................................................................................................................................................................................................................................................................................................................MPPMLSGLLARLVKLL-LGRHGSALHWAAAGAATV---------LLVIVLLAGSYLAVLAERGAPGAQLITYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT............................................................ 140
10 -51.2003hpl_C mol:protein length:124 Voltage-gated potassium channel  ali model follow..  27  1.....................................................................................................................................................................................................................................................................................................................................MAPMLSGLLARLVKLGRHGSALHW---------RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGITSAGLVTAALATWFVGREQERRGH............................................................................ 124
11 -51.2005ebw_C mol:protein length:123 pH-gated potassium channel KcsA  ali model follow..  27  1.....................................................................................................................................................................................................................................................................................................................................MAPMLSGLLARLVKLGRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRG............................................................................. 123
12 -51.2004lbe_C mol:protein length:130 pH-gated potassium channel KcsA  ali model follow..  27  1.....................................................................................................................................................................................................................................................................................................................................MPPMLSGLLARLVKLGRHGSALHW---------RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERAGH............................................................................ 124
13 -51.2002atk_C mol:protein length:124 Voltage-gated potassium channel  ali model follow..  27  1.....................................................................................................................................................................................................................................................................................................................................MAPMLSGLLARLVKLGRHGSALHW---------RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH............................................................................ 124
14 -51.2002nlj_C mol:protein length:124 Voltage-gated potassium channel  ali model follow..  27  1.....................................................................................................................................................................................................................................................................................................................................MAPMLSGLLARLVKLGRHGSALHW---------RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVVVAGITSFGLVTAALATWFVGREQERRGH............................................................................ 124
15 -51.2005e1a_C mol:protein length:124 pH-gated potassium channel KcsA  ali model follow..  26  1.....................................................................................................................................................................................................................................................................................................................................MAPMLSGLLARLVKLGRHGSACH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGCEQERRGH............................................................................ 124
16 -51.1004lcu_C mol:protein length:131 pH-gated potassium channel KcsA  ali model follow..  27  1....................................................................................................................................................................................................................................................................................................................................SMPPMLSGLLARLVKLGRHGSALHW---------RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRAQERRGH............................................................................ 125
17 -50.9003ogc_C mol:protein length:131 Voltage-gated potassium channel  ali model follow..  27  1....................................................................................................................................................................................................................................................................................................................................SMPPMLSGLLARLVKLGRHGSALHW---------RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGH............................................................................ 125
18 -50.9003ifx_A mol:protein length:129 Voltage-gated potassium channel  ali model follow..  27  1.....................................................................................................................................................................................................................................................................................................................................MPPMLSGLLARLVKLGRHGSALHW---------RAAGAATVLLVIVLLAGSYLACLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRG............................................................................. 123
19 -50.6005ebl_C mol:protein length:125 pH-gated potassium channel KcsA  ali model follow..  26  1.....................................................................................................................................................................................................................................................................................................................................MAPMLSGLLARLVKLGRHGSALHW---------RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATGVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGH............................................................................ 124
20 -50.6005ec1_C mol:protein length:125 pH-gated potassium channel KcsA  ali model follow..  25  1.....................................................................................................................................................................................................................................................................................................................................MAPMLSGLLARLVKLGRHGSALHWRAAGA---------ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTXGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGH............................................................................ 124
21 -50.4001j95_A mol:protein length:125 VOLTAGE-GATED POTASSIUM CHANNEL  ali model follow..  27  1.....................................................................................................................................................................................................................................................................................................................................MPPMLSGLLARLVKLGRHGSALHW---------RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH............................................................................ 124
22 -49.2004uuj_C mol:protein length:111 VOLTAGE-GATED POTASSIUM CHANNEL KCSA  ali model follow..  27  1.......................................................................................................................................................................................................................................................................................................................................................AAVALLLGSALHW--RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH............................................................................ 111
23 -47.5003eff_K mol:protein length:139 Voltage-gated potassium channel  ali model follow..  20  4....................................................................................................................................................................................................................................................................................................................................................................HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDN.......................................... 137
24 -47.4002k1e_A mol:protein length:103 water soluble analogue of potassium channel, KcsA  ali model follow..  29  6......................................................................................................................................................................................................................................................................................................................................................................REAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEERRGH............................................................................ 103
25 -47.0003f5w_C mol:protein length:104 Voltage-gated potassium channel  ali model follow..  28  1..............................................................................................................................................................................................................................................................................................................................................................GSALQW--RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGQEQQQQGQ............................................................................ 104
26 -46.6005vk6_C mol:protein length:96 pH-gated potassium channel KcsA  ali model follow..  29  1.....................................................................................................................................................................................................................................................................................................................................................................WRCAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGQCQQQ............................................................................... 96
27 -46.4006by3_C mol:protein length:96 pH-gated potassium channel KcsA  ali model follow..  28  1.....................................................................................................................................................................................................................................................................................................................................................................WRCAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATAVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGQCQQQ............................................................................... 96
28 -46.4005vke_C mol:protein length:96 pH-gated potassium channel KcsA  ali model follow..  29  1.....................................................................................................................................................................................................................................................................................................................................................................WRCAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLAPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGQCQQQ............................................................................... 96
29 -46.2005vkh_C mol:protein length:103 pH-gated potassium channel KcsA  ali model follow..  28  6......................................................................................................................................................................................................................................................................................................................................................................RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLAPVTLWGRCVAVVVMVAGITSAGLVTAALATWFVGREQERRGH............................................................................ 103
30 -46.0001eoe_A mol:protein length:100 POTASSIUM CHANNEL KV1.1  ali model follow..  84  1.....................................................................ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPRNVPLDVFSEEIKFYELGENAFERYREDEGF........................................................................................................................................................................................................................................................................................................................................................................... 100
31 -46.0001eod_A mol:protein length:100 POTASSIUM CHANNEL KV1.1  ali model follow..  84  1.....................................................................ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVDVPLDVFSEEIKFYELGENAFERYREDEGF........................................................................................................................................................................................................................................................................................................................................................................... 100
32 -45.9003kvt_A mol:protein length:115 POTASSIUM CHANNEL PROTEIN SHAW  ali model follow..  34  2..................................................................DAENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGK-LHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHRDTQET................................................................................................................................................................................................................................................................................................................................................................... 111
33 -45.8002i2r_A mol:protein length:144 Potassium voltage-gated channel subfamily D member 3  ali model follow..  25  2..............................AAAGVAAWLPFARAAAIGWMPVANCPMPLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKE-FFFNEDTKEYFFDRDPEVFRCVLNFYRTGK-LHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKREN..................................................................................................................................................................................................................................................................................................................................................................... 144
34 -45.6002nz0_B mol:protein length:140 Potassium voltage-gated channel subfamily D member 3  ali model follow..  26  7.........................................ARAAAIGWMPVANCPMPLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKE-FFFNEDTKEYFFDRDPEVFRCVLNFYRTGK-LHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENAE................................................................................................................................................................................................................................................................................................................................................................... 140
35 -45.3004bgc_A mol:protein length:102 POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY A MEMBER 3  ali model follow..  93  2.....................................................................ERVVINISGLRFETQLKTLCQFPETLLGDPKRRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRIRRPVNVPIDIFSEEIRFYQLGEEAMEKFREDEGF........................................................................................................................................................................................................................................................................................................................................................................... 101
36 -44.9001s1g_A mol:protein length:124 Potassium voltage-gated channel subfamily D member 3  ali model follow..  29  2..........................................................LAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKE-FFFNEDTKEYFFDRDPEVFRCVLNFYRTGK-LHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENLE................................................................................................................................................................................................................................................................................................................................................................... 118
37 -44.8004h33_A mol:protein length:137 Lmo2059 protein  ali model follow..  27  1...........................................................................................................................................................................................................................................................................................................................................MRYIVPIYSFFRSNGLNRF--------------LMIFVLLVIIIPVPMVFIE-----PEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLTKEEIAV..................................................... 129
38 -43.6004chv_A mol:protein length:361 CYCLIC NUCLEOTIDE-GATED POTASSIUM CHANNEL MLL3241  ali model follow..  19  2.................................................................................................................................................................................................SVLPFLRIYAPLNAVLAAPGLLAVAALTIPDM------------------------------SGRSRLALAALLAVIWGAYLLQLAATLLGVVRDRTPKIAIDVLAVLVPLAAFLLD--------------GSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDFVRNWQLVAA.................................................................... 232
39 -43.3001nn7_A mol:protein length:105 potassium channel Kv4.2  ali model follow..  33  2.......................................................................IVLNVSGTRFQTWQDTLERYPDTLLGSS-ERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK-LHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAE................................................................................................................................................................................................................................................................................................................................................................... 105
40 -42.7001exb_E mol:protein length:103 POTASSIUM CHANNEL KV1.1  ali model follow..  88  1...........................................................QADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEK.................................................................................................................................................................................................................................................................................................................................................................................. 103
41 -41.7001a68_A mol:protein length:95 POTASSIUM CHANNEL KV1.1  ali model follow..  85  2.....................................................................ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGENAFERY................................................................................................................................................................................................................................................................................................................................................................................. 95
42 -41.0001dsx_A mol:protein length:87 PROTEIN (KV1.2 VOLTAGE-GATED POTASSIUM CHANNEL)  ali model follow..  98  1.....................................................................ERVVINISGLRFEVQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELG........................................................................................................................................................................................................................................................................................................................................................................................ 87
43 -38.1005tj6_A mol:protein length:1070 High conductance calcium-activated potassium channel  ali model follow..  13  15..............................................................................................................................QWY-----SFLASSLVTFGSLVVIIIYRI---VLWLCCRKKKCIQVSNPVPTARTTEAKDWAGELISGQTTTGRILVGLVFLLSIASLIIYFIDASTNTSV---------------------ETCLPWSSSTTQQVDLAFNVFFMIYFFIRFVAANDKLWFWVELFSFVDYFTIPPSFVAIYL----DRNWLGLRFLRALRLMSIPDILTYLNVLKTSTLIRLVQLVVSF------VSLWLTAAGFLHLLENSGDPFFDFGNAQHLTYWECLYFLMVTMSTVGFGDIFATTVLGRTFVVIFIMIFIGLFASFIPEIAEILGKRQKYGGSYKKERGKRHVV.................................................................. 335
44 -30.1005a6r_A mol:protein length:135 BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD17  ali model follow..  20  2..........................................SSGVDLGTENLYFQSMGAGGRAAGGWGKWVRLNVGGTVFLTTRQTLCREQKSFLSRLGEELQSDRDETGAYLIDRDPTYFGPILNFLRHGK-LVLDKDMAEEGVLEEAEFYNIGP--LIRIIKDRMEEK......................................................................................................................................................................................................................................................................................................................................................................... 129
45 -30.0003drx_A mol:protein length:202 BTB/POZ domain-containing protein KCTD5  ali model follow..  20  1..........................................................SALAQRPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDEYLIDRDPTYFGPVLNYLRHGK-LVINKDLAEEGVLEEAEFYNITS-LIKLVKDKIRERDSKTSQVPVKHVYRVL.......................................................................................................................................................................................................................................................................................................................................................... 129
46 -28.7005bxb_A mol:protein length:107 BTB/POZ domain-containing protein KCTD1  ali model follow..  23  1.................................................................SNANAPVHIDVGGHMYTSSLATLTKYPESRIGRLGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQDRE.......................................................................................................................................................................................................................................................................................................................................................................... 107
47 -28.0005u70_A mol:protein length:1201 Potassium channel subfamily T member 1  ali model follow..  13  157..................................................................................................................................................................................................................................................................AVQVSIALISFLETMLLIYLSYKGNIWEQIFRISFILEMINTVPFIITIFWPPLRNLFIPVFLNCWLAKYALENMINDL---------HRAIQRTQSAMFNQVLILICTLLCLVFTGTCGIQHLERAGEKLSLFK---SFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELVYLWMERQKSGGNYSRHRAQTEK................................................................... 351
48 -28.0002kyh_A mol:protein length:147 Voltage-gated potassium channel  ali model follow..  15  8...................................................................................................................................................................................GGRVRNIGDVMEHPLVE-------LGVSYAALLSVIVVVVEYTMQL--------------------------SGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALI-------EGHLAGLGLFRLVRLLRFLRILLIISRGS--KFLSAIADAADKLV........................................................................................................................................................................... 145
49 -26.8006cnm_A mol:protein length:427 Intermediate conductance calcium-activated potassium channel protein 4  ali model follow..  15  99....................................................................................................................................................................................................................................................................ALTGRQAAQIVLELVVCGLHPAPVRGPPCVQDLGAPLTSPQPWPGFLG------------QGEALLSLAMLLRLYLVPRAVLLRSGVLLHWFVAKLYMNTGRLLLGLTLGLWLTTAWVLSVAER-QAVNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKHVHNFMMDIQYTKEMKESAARVLQMFYKHTRRKESHAARRHQRKLLAAINAFRQVRLKHRKLREQVNSMVDISKMHMIL 378
50 -26.5004crh_A mol:protein length:126 SH3KBP1-BINDING PROTEIN 1  ali model follow..  21  2....................................................SSGVDLGTENLYFQSMGEVIHLNVGGKRFSTSRQTLTWIPDSFFSSLSGRISTLKDETGAIFIDRDPTVFAPILNFLRTKEL---PRGVHGSSLLHEAQFYGLTP....................................................................................................................................................................................................................................................................................................................................................................................... 105
51 -26.1005a15_A mol:protein length:120 BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD16  ali model follow..  18  1..........................................................SMGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLPKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPD-LVKLLTPDEIKQSPDE...................................................................................................................................................................................................................................................................................................................................................................... 120
52 -25.4005bxh_A mol:protein length:106 BTB/POZ domain-containing protein KCTD9  ali model follow..  24  1..................................................................SNADWLTLNVGGRYFTTTRSTLNKEPDSMLAHMKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQ-LIVNDGINLLGVLEEARFFGIDSEHLEVAIKNS............................................................................................................................................................................................................................................................................................................................................................................. 106
53 -24.9003vou_A mol:protein length:148 Ion transport 2 domain protein, Voltage-gated sodium channel  ali model follow..  21  5....................................................................................................................................................................................................................................................................................................................................LSFILTLKRMLKACLRAWKDKEFQVL----------FVLTFLTLTSGTIFYSTV----EG--------RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR........................................... 148
54 -24.2004hyo_A mol:protein length:91 Calcium-gated potassium channel mthK  ali model follow..  24  2.................................................................................................................................................................................................................................................................................................................................................................LPRVLKVPATRILLLVLAVIIYGTAGFHFIEG-------SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFLIN.................................................................................... 90
55 -24.0003t4z_A mol:protein length:97 Potassium channel protein  ali model follow..  26  8..........................................................................................................................................................................................................................................................................................................................................................................QVLFVLTILTLISGTIFYSTVEG-------RPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR.......................................................................... 97
56 -23.9004bgn_A mol:protein length:298 VOLTAGE-GATED SODIUM CHANNEL  ali model follow..  14  32.......................................................................................................................................................................................................................................IIVLIVINAIVVGMETYPGIYQPYQDWFYLIDRMILWVFTAEIILKLVATRPRYHFFKDSWNVFDFLIVASGHLFVGAQF--------------VTVLRVLRVLRLLRAVTVIPSLRRLVSALLYTIPSLGNIMLLMGLIFYIFGVMGTFLFRDVAPEYFGSLHLSLITLFQVVTLESWASGIMRPIMAEYFVAFILVGTFVIFNLFVGVIVSNVERAETEDAEQEEGQREERQGLFEGDGSSVSAEEIAKLRQEIKELRQLLKELKDHHSQSST.......................... 298
57 -23.7004dxw_A mol:protein length:229 Ion transport protein  ali model follow..  16  18........................................................................................................................................................................................................................................VVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIPNNSS-------------FLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYYFFSFIIICSITILNLVIAILVDVVIQKKLE................................................................................ 229
58 -23.7005cbf_A mol:protein length:129 Ion transport 2 domain protein  ali model follow..  15  1...................................................................................................................................................................................................................................................................................................................................................MLGLTLMFKRFFGAVRTSWRDPSTRGAVLSLAIIVTAATIFYTLAEK------SVIDSLFYAVSVGLPMGNGPLSPTLTLSKIFTLVYAILVVGLFVTVGGSLASAIVQNNTEKFKRLNRKGSAEA................................................................... 121
59 -23.3002h8p_C mol:protein length:57 KcsA Channel  ali model follow..  34  6......................................................................................................................................................................................................................................................................................................................................................................RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY.......................................................................................................................... 57
60 -23.2002q67_A mol:protein length:114 Potassium channel protein  ali model follow..  18  1...................................................................................................................................................................................................................................................................................................................................................MLSFLLTLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTVEG------RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR.......................................................................... 114
61 -23.2003ldd_A mol:protein length:82 Calcium-gated potassium channel mthK  ali model follow..  23  2.......................................................................................................................................................................................................................................................................................................................................................................PATRILLLVLAVIIYGTAGFHFIEG--------SWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFAVAVERLLEFL...................................................................................... 81
62 -22.8003r65_A mol:protein length:82 Calcium-gated potassium channel mthK  ali model follow..  23  2.......................................................................................................................................................................................................................................................................................................................................................................PATRILLLVLAVIIYGTAGFHFIEG--------SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVQRLLEFL...................................................................................... 81
63 -22.3003tet_A mol:protein length:97 Potassium channel protein  ali model follow..  23  2...................................................................................................................................................................................................................................................................................................................................................................AKDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR.......................................................................... 97
64 -22.3005yua_A mol:protein length:271 Ion transport protein  ali model follow..  12  22.......................................................................................................................................................................................................................................IIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYV---RISFFKDPWSLFDFFVVAISLVPTSSG---------------FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTS........................................... 268
65 -22.3003t4d_A mol:protein length:97 Potassium channel protein  ali model follow..  25  2...................................................................................................................................................................................................................................................................................................................................................................AKDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR.......................................................................... 97
66 -22.2005klb_A mol:protein length:285 Ion transport protein  ali model follow..  12  36.......................................................................................................................................................................................................................................IIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYV---RISFFKDPWSLFDFFVVAISLVPTSSG---------------FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLDDWSNGIVRPLMEVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTS........................................... 282
67 -22.2005ek0_A mol:protein length:296 Chimera of bacterial Ion transport protein and human Sodium channel protein type 9 subunit alpha  ali model follow..  14  36........................................................................................................................................................................................................................................IIYLIVLNMVTMMVEKEGQSQHMTEVLYWINVVFIILFTIEIILRIYV---RISFFKDPWSLFDFVVVIISIVGMFLADLIETY---FVSPTLFRVIRLARIGRILRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTS........................................... 293
68 -22.2003ouf_A mol:protein length:97 Potassium channel protein  ali model follow..  25  2...................................................................................................................................................................................................................................................................................................................................................................AKDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR.......................................................................... 97
69 -22.1003rvy_A mol:protein length:285 Ion transport protein  ali model follow..  12  35......................................................................................................................................................................................................................................FIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYV---RISFFKDPWSLFDFFVVAISLVPTSSG---------------FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTS........................................... 282
70 -22.0003t2m_A mol:protein length:97 Potassium channel protein  ali model follow..  23  2...................................................................................................................................................................................................................................................................................................................................................................AKDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR.......................................................................... 97
71 -22.0005hvd_A mol:protein length:277 Ion transport protein  ali model follow..  11  20......................................................................................................................................................................................................................................VITAIIVLNGAVLGLLTDTTLSASSQNLLERVDQLCLTIFIVEISLKIYA--GVRGFFRSGWNLFDFVIVAIALMPAQGS---------------LSVLRTFRIFRVMRLVSVIPTMRRVVQGMLLALPGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVFFIPFIMLTTFTVLNLFIGICVDAMAITKEQEEEAKTGHHQEPISQTLLHLGDRLDRIEKQLAQNNELLQRQ....................................... 272
72 -21.9005vb2_A mol:protein length:285 Ion transport protein  ali model follow..  12  36.......................................................................................................................................................................................................................................IIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYV---RISFFKDPWSLFDFFVVAISLVPTSSG---------------FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVFFIPFIFVVFFVMINLYVAIIVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTS........................................... 282
73 -21.9003t1c_A mol:protein length:97 Potassium channel protein  ali model follow..  23  2...................................................................................................................................................................................................................................................................................................................................................................AKDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR.......................................................................... 97
74 -21.9003tcu_A mol:protein length:97 Potassium channel protein  ali model follow..  23  2...................................................................................................................................................................................................................................................................................................................................................................AKDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR.......................................................................... 97
75 -21.7003ous_A mol:protein length:82 Calcium-gated potassium channel mthK  ali model follow..  22  2.......................................................................................................................................................................................................................................................................................................................................................................PATRILLLVLAVIIYGTAGFHFIEG--------SWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL...................................................................................... 81
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.