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Query: 5x6o_G mol:protein length:747 DNA damage checkpoint protein LCD1, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRRETVGEFSSDDDDDILLELGTRPPRFTQIPPSSAALQTQIPTTLEVTTTTLNNKQSKNDNQLVNQLNKAQGEASMLRDKINFLNIEREKEKNIQAVKVNELQVKHLQELAKLKQELQKLEDEKKFLQMEARGKSKREVITNVKPPSTTLSTNTNTITPDSSSVAIEAKPQSPQSKKRKISDNLLKKNMVPLNPNRIIPDETSLFLESILLHQIIGADLSTIEILNRLKLDYITEFKFKNFVIAKGAPIGKSIVSLLLRCKKTLTLDRFIDTLLEDIAVLIKEISVHPNESKLAVPFLVALMYQIVQFRPSATHNLALKDCFLFICDLIRIYHHVLKVPIHESNMNLHVEPQIFQYELIDYLIISYSFDLLEGILRVLQSHPKQTYMEFFDENILKSFEFVYKLALTISYKPMVNVIFSAVEVVNIITSIILNMDNSSDLKSLISGSWWRDCITRLYALLEKEIKSGDVYNENVDTTTLHMSKYHDFFGLIRNIGDNELGGLISKLIYTDRLQSVPRVISKEDIGMDSDKFTAPIIGYKMEKWLLKLKDEVLNIFENLLMIYGDDATIVNGEMLIHSSKFLSREQALMIERYVGQDSPNLDLRCHLIEHTLTIIYRLWKDHFKQLREEQIKQVESQLIMSLWRFLVCQTETVTANEREMRDHRHLVDSLHDLTIKDQASYYEDAFEDLPEYIEEELKMQLNKRTGRIMQVKYDEKFQEMARTILESKSFDLTTLEEADSLYISMGLLast
1 -247.0005x6o_G mol:protein length:747 DNA damage checkpoint protein LCD1  ali model  100  1MRRETVGEFSSDDDDDILLELGTRPPRFTQIPPSSAALQTQIPTTLEVTTTTLNNKQSKNDNQLVNQLNKAQGEASMLRDKINFLNIEREKEKNIQAVKVNELQVKHLQELAKLKQELQKLEDEKKFLQMEARGKSKREVITNVKPPSTTLSTNTNTITPDSSSVAIEAKPQSPQSKKRKISDNLLKKNMVPLNPNRIIPDETSLFLESILLHQIIGADLSTIEILNRLKLDYITEFKFKNFVIAKGAPIGKSIVSLLLRCKKTLTLDRFIDTLLEDIAVLIKEISVHPNESKLAVPFLVALMYQIVQFRPSATHNLALKDCFLFICDLIRIYHHVLKVPIHESNMNLHVEPQIFQYELIDYLIISYSFDLLEGILRVLQSHPKQTYMEFFDENILKSFEFVYKLALTISYKPMVNVIFSAVEVVNIITSIILNMDNSSDLKSLISGSWWRDCITRLYALLEKEIKSGDVYNENVDTTTLHMSKYHDFFGLIRNIGDNELGGLISKLIYTDRLQSVPRVISKEDIGMDSDKFTAPIIGYKMEKWLLKLKDEVLNIFENLLMIYGDDATIVNGEMLIHSSKFLSREQALMIERYVGQDSPNLDLRCHLIEHTLTIIYRLWKDHFKQLREEQIKQVESQLIMSLWRFLVCQTETVTANEREMRDHRHLVDSLHDLTIKDQASYYEDAFEDLPEYIEEELKMQLNKRTGRIMQVKYDEKFQEMARTILESKSFDLTTLEEADSLYISMGL 747
2 -46.1005loi_A mol:protein length:470 Rad26  ali model follow..  10  1..........................................................................................................................................................................................................SPDFLKLFLNHTTMHGQPPTFDMFSRFCFPSD-----------PERSLASIVLQKLPQMGSPGDPTSLLVDFADTLIDLWHQCL--SERYYGPIYHLVSLLLYTLDLNAVEVAPHILSSLIPVCATTCRL---VALPRLNSADGDLSGHPDAVVRQLCLNIDVTQCLSVLYLAASGCLPQPLQNPTSS-QLEFWKTMELDFVLTMLSPKNP-EEDWSAMMILLRTSVAPHSIGPIPSSATNSTNRRSEAKNADAVAATLIDCVSSFLC--------------------------------------------------------------EPPKWATPRSAKEIAARLAALRTLMAFATGFGARQIAESDVAIPRLVTVLCWALDRLYDS-TDAAPDSMSLLHQIIAQGTRLLHFLVTDHRTSDAANISHGGSQRYFLTLARLNFAEED-------------------------------------------------------LVLEAGIDAETVELAHELLE----LAVTPDEGDEISEMFD. 470
3 -38.9005omb_C mol:protein length:111 DNA damage checkpoint protein LCD1  ali model follow..  35  5......DLWDDNDDDDDILELVNRPPMSQMAVPIKPPE------------------------SQAEQLMKAKGEVGVLRQKLSMLEKTLREHDDNQKKLESSLKSSHEEEVTKLKIELERLEDERKFMLLEQKHL.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 109
4 -23.5005yz0_C mol:protein length:791 ATR-interacting protein  ali model follow..  11  46..DDPFGAHGDADDLEELDTLASQALSQCPAAARDVSSDHKVHRLLDGMSQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFGKTS------PTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQLSALREAQNLAFTGLNLVARNAVHFLP------LVQFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVSSGVETNPEDSFSVTALSILQHLVCHSTSALRGVADDQGQHPLLKMLLHLLAFSSAATGHLQASVLTQCLKVLVKLAENTSCDFLPR--------------FQCVFQVLPKCLSPETPLPSVLLAVEL-LSLLADHDQLAPQLCSHSEGCLLLLLY---------MYITSRPDRVALETQ-------------LQLEQEVVWLLAKLGVQSPLPPVTGSNEVVRALTVMLHRQWLTVRRAGGPPRTDQQRRTVRCLRDTVLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSMLIRGLPDVTDCEEAALDD.................................................................................... 775
5 -22.8005omd_A mol:protein length:66 DNA damage checkpoint protein LCD1  ali model follow..  100  3........................................................................GEASMLRDKINFLNIEREKEKNIQAVKVNELQVKHLQELAKLKQELQKLEDEKKFLQMEARGKS................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 66
6 -12.8005oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  486..ADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAAL---ENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIR---------------PGAENKKLMFAIVKKLCRKVGNDHMELK.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 745
7 -12.6005fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  474..ADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALY--ENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTITEKDIIEAIGDGKVNIKEFGKFIR---------RKYPGAENKKLMFAIVKKLCRKVGNDHM................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 730
8 -12.3004v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  469..ADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFGEKKIDEDGEKIKKALQKTELAALY--EDEINPYLSESDIENKENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANAHVHKEPNLRVKSIKDCVIILKGDKKVLKSFPEGEWNPHAAKIKDISGNESNAVSAPIKKEKPLESIVVQEKETPAPLITEQDIIDAIGDGKVNVKEFGKSIR---------RRYPGAENKKLMFAIVKKLCRKVDNEHM................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 725
9 -9.9605xjc_X mol:protein length:184 PRKR-interacting protein 1  ali model follow..  14  35.................LERLMKNPDKAVPIPEKMSEWAPRPPPEFVRDVMGSSAG-------------AGSGEFHVYR-------HLRRREYQRQDYMDAMAEKQKLDAEFQKRLEKNKIAAEEQTAKRRKKRQKLKEKKLLAKKMKLEQKKQEGPGQPKEQGSSSSAEASGTEEEEEVPSFT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181
10 -9.7806g90_J mol:protein length:620 U1 small nuclear ribonucleoprotein component SNU71  ali model follow..  10  336.EEEDTNMEDEDEEDDTEDDLALEKRKEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLHLANDVHYDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKSENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPTKPSERSAATADELNIRLTNLKESRVDELVREFLG-----------------VYEDELVEYILENIRVNQSKQALNELRETFDEDGETIADRLWSR------------------KEFRLGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 620
11 -9.4403jcs_Q mol:protein length:245 ribosomal protein L19e  ali model follow..  28.EAVEIQNANSRKSVRKLIKFIIRKPVKVHSRARWRKMKEAKDMGRHNGVGRREGSREARMPSKELWMRRLR----ILRRLLRKYRADKKIDRHVYRDLYVRAKGNVFRNKRNLVEHIHKIKNEKKKERQLAEQLAAKHLRDEQNRNKARKQELRKREKERERARRDDAAAAAQKKKADAAKKSAASAAKSA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 216

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 8 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.