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Query: 5xjc_x mol:protein length:703 Protein CASC3, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKPRYGSPPQRDPNWNGERLNKSHRHQGLGGTLPPRTFINRNAAGTGRMSAPRNYSRSGGFKEGRAGFRPVEAGGQHGGRSGETVKHEISYRSRRLEQTSVRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEKKSYSRARRTRTKVGDAVKLAEEVPPPPEGLIPAPPVPETTPTPPTKTGTWEAPVDSSTSGLEQDVAQLNIAEQNWSPGQPSFLQPRELRGMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPAPPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMLVQPGMNLPHPGLHPHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQVYGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSRGSSLast
1 -153.0005xjc_x mol:protein length:703 Protein CASC3  ali model  100  1MADRRRQRASQDTEDEESGASGSDSGGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGALHLRRVESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKPRYGSPPQRDPNWNGERLNKSHRHQGLGGTLPPRTFINRNAAGTGRMSAPRNYSRSGGFKEGRAGFRPVEAGGQHGGRSGETVKHEISYRSRRLEQTSVRDPSPEADAPVLGSPEKEEAASEPPAAAPDAAPPPPDRPIEKKSYSRARRTRTKVGDAVKLAEEVPPPPEGLIPAPPVPETTPTPPTKTGTWEAPVDSSTSGLEQDVAQLNIAEQNWSPGQPSFLQPRELRGMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPAPPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMLVQPGMNLPHPGLHPHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQVYGGVTYYNPAQQQVQPKPSPPRRTPQPVTIKPPPPEVVSRGSS 703
2 -19.2004u7a_A mol:protein length:826 Ribosome biogenesis protein ERB1  ali model follow..  10  1..........ASAALEVLFQGPGMMAKNNKTTEAKMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKLQTIVDPNIYSKYADGSDRIIKPEINPVYDSDDSDAETQNTI-IPLS--AYDHNGKRIMRPAKGSALDQLLDSIELPEGWTLDKNSGSSLNLTKEEELISK----IQRNEQTDDS.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 249
3 -18.9005ife_C mol:protein length:1304 Splicing factor 3B subunit 1  ali model follow..  10  6........................................................................................................................................................KTHEDIEAQIREIQGKKAALDEAQG----LDSTGYY---DQ---------------------------EIYGGSDSR-----------GYSIAATELEDD-----------------------------DDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTG---------FHMQTEDRTMKSVNDQPSGNLPFLKPDDIQ...... 473
4 -15.3003gdb_A mol:protein length:937 Putative uncharacterized protein spr0440  ali model follow..  12  1MAGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDANRGSVVLA-------SRRTGHLVNEKASKEAKVQALSNDYWQYDSM--EGLVPQDADDMAKYYGYDINQETT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 317
5 -13.3005bpw_A mol:protein length:843 Anaphase-promoting complex subunit 4  ali model follow..  19  747..................................................................................................................DIDDEWELDESSDEEEEASNKPVKIKEEVLSESEAENQQAGAAALAPEIVIKVEKLDPELDSENPQF--EKG--------GGSGGGSGG------------GSWSHPQFEK.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 843
6 -13.2005oik_Z mol:protein length:1087 Transcription elongation factor SPT5  ali model follow..  11  1MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGG---LDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQ-KDEERATAISLMRKGYIYVEAYKQTHKEMTDVLKVVKEVANLKPKSWKRGIYKDDPSQNTISLKMIPR--IDYDRIKARMSLKDWFAKRKKFKRPPQR.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 338
7 -12.8001yo8_A mol:protein length:634 thrombospondin-2  ali model follow..  8  420.LDPKGTTQIDPNWVIRHQGKELVQTANSDPGIAVGFDEFGSVDFSGTFYVNTDRDDDYAGFVFGYQSSSRFYVVMWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPGQVRTLWHDPRNIGWKDYTAYRWHLTHRPKTGYIRVLVHEGKQVMADSDQTYAG-----RLGLFFSQEM------------------------FSDLKYECRDIAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 627
8 -12.5005gjv_A mol:protein length:1873 Voltage-dependent L-type calcium channel subunit alpha-1S  ali model follow..  8 1479..............................................................................................................................................TEGNFEQANEELRAIIKKIWKRTSMKLLD--------QVIPPIGKFYEHFRKFMKRQEEYYGYRPKKDTVQIQAGL---RTIEEEAAP------------EIRRTISGDLTAEEELERAMVEAAMEERIFRRTGGLFGQVDTFLERTNSLPPVMANQRPLQFAEIEMEELESPVFLEDFPQDARTNPLARANTNNANANVAYGNSNHSNNQMFSSVHCEREFPGEAETPAAGRGALSHSHRALGPHSKPCAGKLNGQLVQPGMPINQAPPAPCQQPSTDPPERGQRRTSLTGSLQDEAPQRRSSEGSTPRRPAPATALLIQEALVRGGLDTLAADAGFVTATSQALADACQMEPEEVEVAATELLKARESVQGMASVPGSLSRRSSLGSLDQVQGSQETLIPPR............................................................................................................................................................. 1872
9 -12.3005oql_B mol:protein length:907 Utp2  ali model follow..  9  234IAKSKMYKAERQAIKEEEKKEAPVPIIAGKEKTVVDKEYDIRLKQLAMDKRAQPAEPVKTEEEKAAEAAKKLQELEEKRLKRMRGEPVSDDEESESEEDKGKKDKKDNAVDPLNAEESEDEFGLGKGVKYKPTATELGLDDEDDFLIDDDLVASGSELEFDSEDFSDVESDEEEGSSESK---------DEEDDEFIKGILTEAEQQEAVFQQPKQGDDENGIPYTFPCPQSHEEMLNV................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 491
10 -12.2006ez8_A mol:protein length:3138 Huntingtin  ali model follow..  10  436.KGKVLLGEEEALEDDSESRSDVSSSALTASVKDEISGELAASSGVSTPGSAGHDIITEQPRSQHTLQADSVDLASCDLTSSATDGDEEDILSHSSSQVSAVPSDPAMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGTDNQYLGLQIGQPQDEDEEATGILPDEASEAF------------RNSSMALQQAHLLKNMSHCRQPSDSSVDKFVLRDEATEPGDQENKPCRIKGDIGQSTDDDSA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 675
11 -12.1006fhs_H mol:protein length:491 les2  ali model follow..  14  1MSTRPRRHAAQRASQAITDLADRDRESDHSHGPISSRMSSFNSSSRSRLPGKGIASVSRSEAGGASDPEHTSSSGIKKAGSVGSSSSSSGGGKAAVKRARGGKRSRVLESSEEEEEENEVEVLGDEDEEEEEEEDEIEVREGEGYDEDEEDVEDEDEEMQDLGEEDADGEDDEMDVDAEG---------EEDADGDVNMDAGVVGARATTVRAVPPA------IKVTKPPKESPS.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 235
12 -11.9005z10_A mol:protein length:2547 Piezo-type mechanosensitive ion channel component 1  ali model follow..  9 1453LRQRRERARQERAEQLASGGDLNPDVEPVDVPEDEMAGRSHMMQRCAERYLLTQELLRVGEVRRGVLDQLYVGEDEATLSGPVETRDGPSTASSGLGAEEPLSSMTDDTSSPLSTGYNTRSGSEEIVTDAGDLQAGTSLHGSQELLANARTRMRTASELLLDRRLHIPELEEAERFEAPVLVPRPSKRF----------------------------W---VFTEYENKPYFPPRIL---GYDL------------------HRSQLLCYGLWDHEEDRYPKDHCRSSVKDREAKEEPEAKLESQSETGTGHPKEPVLAGTPRDHIQGKGSIRSKDVIQDPPEDLKPRHTRHISIRFRRRKETPGPKGTAVMETEHEEGEGKETTERKRPRHTQEKSKFRERMKAAGRRLQS................................................................................................................................................................................................................................................................................................... 1945
13 -11.8005oql_C mol:protein length:648 Utp3  ali model follow..  11  1MA--KKRKATRPAEPQGPKEIDPKDARLTVNNYMDVADSEDE--------------------------------------------WYKKDRLDIDSDDEPRSKRLKRQDKEDAFLEQSDEEIFDDELSSEEEEEDDEDERRAPTKKDGKKGAALDDDDDAELLGLGKKKDDDEIRDEGWWGSSKKEYYNADAIETEQDALEEEKEARRLQAKKLAKMQEADFGPEERY-ARYPEFDYL---EFRE......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 238
14 -11.6005z3g_b mol:protein length:427 rRNA-processing protein EBP2  ali model follow..  10  1MAKGFKLKELLSHQKEIEKAEKLENDLKKKKSQELKKEEPTIVTASNLKKLEKKEKKADVKKEVAADTEEYQSQALSKKEKRKLKKELKKMQEQDATEAQKHMSGDEDESGDDREEEEEEEEEEEGRLDLEKLAKSDSESEDDSESENDSEEDEDVVAKEESEEKEEQEEEQDVPLSD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 178
15 -11.2005nrl_N mol:protein length:291 Pre-mRNA-splicing factor SPP381  ali model follow..  13  1MSFRHFKRRLDTSSADESSSADEEHPDQNVSLTEKSASLSHSDLGGEILNGTGKNRTPNDGQESNESDGSPESDESPESEESSDNSDSSDSDDM-----KKKANNLQKATKIDQPWNAQDDARVLQTKKENMIKNIDKANQVAKNYETMKLRLNTNYSTNEELIKQCLLLD-DNDEVDSE--------------------------------KERQKWQKHR-RIQLAKQRESEEY................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 214
16 -11.1005o9z_P mol:protein length:800 U4/U6.U5 tri-snRNP-associated protein 1  ali model follow..  16  1MGSSKKHRGEKEAAGTTAAAGTGGATEQPPRHREHKKHKHRSGGSGGSGGERRKRSRERGGERGSGRRGAEAEARSSTHGRERSQAEPSERRVKREKRDDGYEAAASSKTSSGDASSLSIEETNKEVNAIKKEAGTKEEPVTADVINPMALRQREELREKLAAAKEKRLLDDPWLDDTAAWIERQGLTVEHDKGVLQEEEDVDKERAEKNVELRKKKPDYLPYAEDESAQQKPRSILSKYDEELEGER....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 345
17 -10.9005oql_c mol:protein length:785 Putative U3 small nucleolar ribonucleoprotein protein  ali model follow..  9  296..DEFNKQTQMWEDQDMRAEPTAELDDDSEDIDWHADPFAVKPSKRGKKDDGDMDLDDEEDESDDEAPPVGKKALEKMLDKDEDDEGGNLEDDLADGMGMDLTANDIYYKDFFAPPRKKKKPGSSKKKRELELETKRPDDADVERAEQDVRRDLFDDLSEHEDSEDALSDASAGDPKSRK---------AHERRQAKIAEQIRKLEAEL----AKRAWAADRFDHTEEVSESIEELIKR--FDLRRRPDMFGNPHGVRRG........................................................................................................................................................................................................................................................................................................................................................................................................................................................... 574
18 -10.8003jb9_h mol:protein length:265 Pre-mRNA-splicing factor cwf15  ali model follow..  11  29LPAHLKLKYRQESQGTEEEVRKQDLREALLRAEAAHFATQEHGASSEEVSQNSKLIEGFTSPSTDDKPNNDVEVDYQELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQQLLRELENIKQERKREQMLQEEKNRALEQEKREREFGNE-------------------NKASSGSFQVKR------RWDED-FRNTHKGVDDTPR--PGFVNDLRSE........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 254
19 -10.7005fl8_r mol:protein length:767 Protein SDA1  ali model follow..  8  501..DRGKNAAMEVQEAKKGGKDSKRPQFGADNSVQGIAGIELLAKWKKEHGEESENEDADANWEVDVDSEEDDVDGEWVTMDSDKEYDVDMEDSDDEKDNAKGKESDSDLELSDDDDEKEVKDEQEDADIDPEAAFREIASTRILTPADFAKLQELRNEESVAKIMGIHKQDKREELVDASTLTGPIK--YKQSREERLQKVLEGREGRDKFGSRRGKRDNMRSTTNREKERRKNFVMSIHKRSVRGKQKMSLRDKQKVLRAHITKQKKKG................................................................................................................................................................................................................................................................................................................................................................................................................................................. 766
20 -10.6005o9z_K mol:protein length:439 Microfibrillar-associated protein 1  ali model follow..  10  159..RKNEEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKDRVTVQEREAEALKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDENDEEEYEAWKVRELKRIKRDREDREALEKEKAEIERMRNLTEEERRAELRANGKVITNKAVKGKYKFLQKRGAFFMDEDEEVYKRDFSAPTLE-------------DHFNKT---PKVMQ--VKNFG-HLVDQD....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 398
21 -10.6005mqf_T mol:protein length:908 Pre-mRNA-splicing factor CWC22 homolog  ali model follow..  10  655...VAQKPDVEQNKSSPSSSSSASSSSESDSSDSDSDSSDSSSESSSEESDSSSISSHSSASANDVRKKGHGKTRSKEVDKLIRNQQTNDRKQKERRQEHGHQETRTERERRSEKHRDQNSSGSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKRGERRNS-----------SENEKHTHRIKDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAE---------RRWEKSSRYSEQSRESKKNQDRRREKSPAKQK........................................................................................................................................................................................................................................................................................................................................................................................................................................... 908
22 -10.5005a5t_C mol:protein length:843 EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C  ali model follow..  11  43LEDYLNELWEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITNYKQNPEQSADEDAEKNEEDSEGSSDEDEDEDGVSAAAFLKKKAEAPSGESRKFLKKMEDEDEDSEDSEDDEEWDTGSTSSDSDSEEEEGKQTALASRFLKKAPTTEEDKKAAEKKREDKAKKKHDRKSKRL------------DEEEEDNEGGEWERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 271
23 -10.5006gmh_M mol:protein length:1726 Transcription elongation factor SPT6,Transcription elongation factor SPT6,Transcription elongation factor SPT6  ali model follow..  10  4MSDFVESEAEESEEEYNDEGEVVPRVTKKFVEEEDDDEEEEEENLDDQDEQGNLKGFINDDDDEDEGEEDEGSDSGDSEDDVGHKKRKRTSFDDRLEDDDMSDDEDDDEEEYGKEEHEKEAIAEEIFQDGEGEEGQEAMEAPMAPPEEEEEDDEESDIDDFIVDDDGQPLKKPKWRKKLPGYTDAGVDFDYDEFEKYNEYDEELEEEYEYEDDEAEGEIRVRPKKTTKKRVSRRSIFEMY--DIRATDLPERFQLRS.............................................................................................................................................................................................................................................................................................................................................................................................................................................................. 305
24 -10.5005yfp_A mol:protein length:1336 Exocyst complex component SEC3  ali model follow..  10  9..................................................................KRKSHSRETSHDENTSFFHKRTISGSSAHHSRNVSQGAVPSSAPPVSGGNYSHKRNVSRASNSSQTSNFLAEQYERDRKAIINCCFSRPDHKTGEPPNNYITHVRIIEDSKFPSSRPKKKRLL-HKARENSDGS-------------QIGRWQLTKYYWETNSAKERTSLITLYNWDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSNSTLNEVNKRYELEQQQQQEEAELRRLEEQKRLQLQKENEMKRLEEERRIKQEERKRQMELEHQRQLEEEERKRQMELEAKKQMELKRQRQFEEEQRLKKERELLEIQRKQREQETAERLKKEEQEALAKKEEEEKSKRNKVDNESYTQEINGKVDNLLEDLNAVLAEETETTPTMQNGTYVPERSTARAHDQLKKPLNIAKVESLG....................................................................................................................................................................... 525
25 -10.4006g18_v mol:protein length:552 Serine/threonine-protein kinase RIO2  ali model follow..  10  329..KEGSEFSFSDGEVAEKAEVYGSENESERNCLEESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRDEENVGAMNQYRTRTLSITSSGSAVSCSTIPPELVKQ----------------KVKRQLTKQQKSAVRRRLQKGEANIFTKQRRENMQNIKSSLEAASFWG-E............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 552
26 -10.1006e11_d mol:protein length:993 Translocon component PTEX150  ali model follow..  12  747..DYAKQKKSEKKEDQQEDDDGFYDAYKQIKNSYDGIPNNFNHEAPQLIGNNYVFTSIYDTKENLIKFLKKNSEYDLYDDDDKEGGNFKSPLEKKLKEKKKKEEMEENKEFDFSKNYNFSSKNDGGVTMFSKDQLEDMVKNFGGKPSAHVTDSFSRKENPFVPTNTKNNSNDDDDMDNG-------------YVTFDGKNKVSENDDDEKGNNNDDENDNDDSNDEEELDEEEDD.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 992
27 -9.6805oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  10  461.ADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLN---PTITEKDDGKVNIKEFGKFIRRKYPGAENKKL................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 725
28 -9.6805oql_K mol:protein length:938 Utp14  ali model follow..  9  70..SASRNKRQHEDDEEDDFDGFDDDEGMGRKKRARRDSGGDEDGDDVDEDMEGGADGEDDSEEWHVGVTGADEDSEIDSDEAFGESDEERFEGFVFGGSKSHKKGTKKRRNGSEDDAIDLATALDQYESSEEGEEGEESESEEDDEESEEEDSDEEDDDPSKLDALQSMIAGFAGEDEP--LAKR------------QQDRLMREAAYKKTNETLDRWI--------KHNRRAEHLV----FPLAQNA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 347
29 -9.6204v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  11  404.AEKRMDKKSGEVPLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFGEKKIDEDGEKIKKALQKTELAALYSSDEDEINPYLSESDIENKENEPSVKKEEDIDSLSKSKKSSPKKQ-----------DKKVLKSFPEGEWNPHAAKIKDISGN---PLITEQDDGKVNVKEFGKSIRRRYPGAENKKL................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 708
30 -9.6104wse_A mol:protein length:584 Putative poly(A) polymerase catalytic subunit  ali model follow..  6  410LVKARNIYLDQTGKSVLDNTVFKEFRTNCTGNTISFTRMNRLRLLEKRKQGKQTSFVYTPEDFFKKDLETQAKLDPSKARFKNTSGNKIMVPKYLLFKIDNNGNIEDNIHSEEAEISEKEETSGGSSISTDKSFEESPNSSPNSSPNNSLNNSIDISTNNYDDRSENSLDSLTSD................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 584
31 -9.3801rxt_A mol:protein length:496 Glycylpeptide N-tetradecanoyltransferase 1  ali model follow..  10  1MADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQ--------------------------------DTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENYVEDDDNMYSPEFLLWALRPPVSSRKLV---GFKLRSKRVAPVLIREITRRVHLEG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 275
32 -9.2305fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  8  425MKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHK--IKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSN---PTITEKDDGKVNIKEFGKFIRRKYPGAENKKL................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 713
33 -9.2306elz_I mol:protein length:663 Nucleolar complex-associated protein 3  ali model follow..  10  1MAKRNRSQFRIQERTAKKRKHEDSLLEGNVFQNAPEDMDENTIYSAKGSSWDEEEQDYEMVPRKNRSDTSNLVEG--KVNGKVERKLHKAQEKPKDDDEEDEDSNDSSEDDEGPNEEQEAEAKEDEPDTEEKILQLKEDIADLVTKVMEEPEENTAALGR--------KMVESKNPN--SIIP------GYRIRPLTETEKKEKVSKEVSKLRNFEQALVYNYKNGILATQAAKELIST--FNFRTD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 271
34 -9.2205iy6_S mol:protein length:517 General transcription factor IIF subunit 1  ali model follow..  10  160.AEEEWERRNKVLNDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKKAPLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSE---------ESDIDSEASSALFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 395
35 -9.1805fyw_W mol:protein length:482 TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA  ali model follow..  7  264ITTASDEVAQRELQERQAEEKRKQNAVPEWHKQSTIGKTALGRLDNEEEFDPVVTASAMDSINPDNEPAQETSYQNNRTLTEQEMEERENEKTLNDYYAALAKKQAKLNKEEEEEEEEEEDEEEEEEEEMEDVMDDNDETARENALEDEFEDVTDTAGTAKTESNTSNDVKQESINDK-----------TEDAVNATATASGPSANAKPN-------------DGDDDDDDDDDE--DIEFEDV........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 482
36 -9.1306g18_u mol:protein length:804 Pre-rRNA-processing protein TSR1 homolog  ali model follow..  10  314.RGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIPDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGGSQSGGEGDEYEYDDMEHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIRFQKYSFRTSPWDPKENLPQDYARIFQFQN--PHERDPGNTEPVKAKEELIFHCGF--RRFRASP.................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 627
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.