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Query: 5xxb_E mol:protein length:193 Ribosomal protein eL6, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAPTAAALAKKRLRTRKPKRQLYKSPAGAAKRMAKLRSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLLVTGPFKVNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKLRKKQDEGMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLSKDKLLTQYLKTRFTLRGNMRPHEMKFLast
1 -100.0005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model  100  1MAPTAAALAKKRLRTRKPKRQLYKSPAGAAKRMAKLRSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLLVTGPFKVNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKLRKKQDEGMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLSKDKLLTQYLKTRFTLRGNMRPHEMKF 193
2 -87.7003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  38  1.......MAATKSAASAAKRKAAKKVSRKSPEYTTLRKSCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEKQKARAEKAAKKTSKAGKKTPVSDARAQLQKKIDAALIAAIKKDAEKAGYLRSVFTVKPGDAPHRWNW 195
3 -86.9005t2a_t mol:protein length:195 eL6  ali model follow..  38  1.......MAATKSAASAAKRKAAKKVSRKSPEYTTLRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEKQKAKAEKAAKKTSKAGKKTLVSDARAQLQKKIDAALIAAIKKDAEKAGYLRSVFTVKPGDAPHRWNW 195
4 -85.6005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  41  1...............................EYTTLRKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLVISGPMKYNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEKAKKAAEQKAKKTAKAAPKGIVSDARAQLQKKVDAALIEAIRKDPEKAGYLHSVFTIKPGDAPHRMRW 171
5 -85.0003jbs_A mol:protein length:176 eL6  ali model follow..  44  4.........QKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED-NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN----------LFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
6 -83.8005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  48  3........AQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED-NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEXXXXXXXXXX----------XXXXXXXXKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
7 -83.5003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  39  56...KLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSS-GLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ--------EGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 236
8 -81.3003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  28  17..KKVLVPVNAKKTINKKYFGRKVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNS-GLLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFELNYAQDIDDDSFIKTLEIKKKQKKLLKNKNNVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNKVFAHYLKSKFTLRNDMVLHKMKF 221
9 -79.6005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  39  111...KLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSS-GLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ--------EGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFALTNGVYPHKLVF 291
10 -77.8003j92_E mol:protein length:284 eL6  ali model follow..  39  104...KLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSS-GLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQ--------EGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
11 -77.0004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  39  108...KLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLAS-GLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQ--------EGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
12 -57.7005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  27  18.PSWRGIPRISFTRPAVAAEVDPIAKPACNAKAVETRANLKVGTVVIIVGGEHQGKRAVVVADQGA-GIVKVAGPV----VPVNEISQDYLIATSTSIDV-----------------------------------------------------AANATEAQVEAAAAKVPEMVDYLKAPFTIKKGNRIHLMKF 151
13 -24.7002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  23  2.....................................PAIEVGRICVKVKGREAGSKCVIVDIIDDN-FVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRM............................................................... 93
14 -13.9005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  15  5....................................TRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVL-VDGA-GVTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKK.......................... 134
15 -13.5003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  21  1...................................MGKLLKPGKVIIILNGRRAGKKAVIVNTYEGQSYCLVAG---IEKHPIKCINVNHILPTRYQVAND-FDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTGEVS............................................... 134
16 -13.4003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  18  15.......................................VEVGRVVLIKKGQSAGKLAAIVEIIDQKKVL-IDGP---AGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAKA............................ 138
17 -13.3003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  12  22....................................KRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVI-VDGA-FITGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQK............... 162
18 -13.2005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  22  1...................................MVKLLKSGRVVVVLNGRHAGKKGVVVNTWEGSAFCLVAG---IEKAPLKYINVNHLMPTRYTVSSD-MDVKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNEKVGKVSKD............................................ 136
19 -13.2005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  29  3.......................................LKPGKVVIVTSGRYAGKKAVIVQNTDSKGHSLIAG---MKKYPLRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRK.................................................................... 112
20 -12.9003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  24  1...................................MTKFLKPGKVVIVTAGRYAGHKAVIVQNSDIAGRALLAG---IKKYPLRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRHV................................................................... 115
21 -12.8005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  22  4.......................................LQAGRFVVMLQGRHAGKKAVVLAAYPEGT-AIVMGPKKVTK--VKAVNFNHVMLTRHNVKDE-DFFKKISVEKVVAALKDAPAKKALLTEYAAVLRQKYLNNKMAWFFKPLQ.......................................... 138
22 -12.7005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  12  3.......................................IRAGRLVRIIRGPRQDRVGVVVDIIDGNRVL-VENP-ADKKMWRHVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKARRIAAKRAFARSTDFERYQLRVAKRSRAFWTRKVFDENDKKKP....................... 132
23 -12.4003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  22  1...................................MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGGHALVAG---IERYPIKVVNYNHLLPTRYTLDVEAFK--SVVSTETFEQPSQREEAKKVVKKAFEER........................................................... 121
24 -12.4003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  22  1...................................MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGSHALVAG---IDRYPVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEER............................................................. 121
25 -12.2003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  13  62....................................SHYICAGRLVRILRGPRQDRVGVIVDIVDANRVL-VENP-EDAKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRAARVEAKKACAASTDFERYQLRVARRSRAHWARKVFDEKDAKTP....................... 194
26 -12.1005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  12  7.......................................VEIGRVALINFGELVDKLAIIVDIVDDKRVL-IDVL---FDAPRQTIPIQRLKLTDYVAKIQRNAAPEAAKAAA-KDFIKQFYESAWGKQVIARKNKAQMNDFQRFKYAQLEAKRDALVAKELNN............................. 127
27 -11.6005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  12  4....................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGP---TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAAL....................... 135
28 -11.4004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  14  4....................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGP---TQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADNTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAAL....................... 135
29 -11.0003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  13  4....................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGPC--TQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLE................................ 126
30 -10.6006d90_M mol:protein length:198 eL14  ali model follow..  13  4....................................RRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRAL-VDGPC--TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRA......................... 133
31 -10.4003j7y_V mol:protein length:216 uL24  ali model follow..  9  55......................................YLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGG---LN-IGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWIDGPKDTSVEDALERTEEVMEAMGIKET............ 207
32 -10.4004ce4_Y mol:protein length:216 MRPL24  ali model follow..  10  55......................................HLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEG-THYRYVGKTVDYRGTMIPSEAPLLHNQVKLVDPTDRKPTDVEWRFTEAGERVRVSTRSGRIIPKPEFPRADGIVPETWIDGPKDTSVEDALEKTEEVMEAMGIQET............ 207
33 -9.7004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  16  2..................................RVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKK-VSPKYPQGGFIEKEAPLHASKVRP........................................................................................ 74
34 -9.2703j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  14  1...................................MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKH-VPALNQPGGIVEKEAAIQVSNVAI........................................................................................ 72
35 -9.2201nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  21  2.........................PRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITK-PSMTNPQGGQEQRELALHASKVAL........................................................................................ 83
36 -9.2104wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  17  2......................................HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKK-PTQLNPEGGILETEAAIHVSNVQL........................................................................................ 70
37 -9.1705mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  12  53......................ERKDCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKD---LN--SKEEGEQGQIIKIEAAIHSSNVMLYSKEQEV--SRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQNKKESETAVAVAA................................ 192
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.