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Query: 5xxb_L mol:protein length:134 Ribosomal protein eL14, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MGLFTRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAGVTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKKLast
1 -84.8005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model  100  1MGLFTRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAGVTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKK 134
2 -76.3003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  36  9.ASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPK-AGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAKA.. 138
3 -75.2005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  25  1.....NYIRAGRLVRIIRGPRQDRVGVVVDIIDGNRVLVENPADKKMWRHVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKSARRIAAKRAFARSTDFERYQLRVAKRSRAFWTRKVFDENDK 129
4 -75.2003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  40  20..LFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGAFITGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNG 151
5 -74.8006d90_M mol:protein length:198 eL14  ali model follow..  42  2..VFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPC-TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQR 132
6 -72.7003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  22  58IMVKSHYICAGRLVRILRGPRQDRVGVIVDIVDANRVLVENPEDAKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSRAHWARKVFDEKDA 191
7 -72.3005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  33  2..PFKQFVEIGRVALINFGELVDKLAIIVDIVDDKRVLIDVLE-FDAPRQTIPIQRLKLTDYVAKIQRNAAPEAAKAAAK--DFIKQFYESAWGKQVIARKNKAQMNDFQRFKYAQLEAKRDALVAKELNN... 127
8 -69.3004adx_7 mol:protein length:126 RPL14E  ali model follow..  37  2..VFNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGE---HIVRQVIPIRRVHLTKFQINVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKS...... 125
9 -58.4003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  44  2..VFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPC-TQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132
10 -57.7004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  41  2..VFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPC-TQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132
11 -57.6005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  42  2..VFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPC-TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQR 132
12 -40.3002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  29  2.....PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDTGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRMPTL................................... 96
13 -21.1003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  15  51....RKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPEINGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEAKEDPKVQKLEGIQKDIGSLLKPEIL 195
14 -16.9005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  15  53....RANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPV---VPVNEISQDYLIATSTSIDVAANATEAQVEAAAAKVPEMVDYLKAPFTIK...................................... 141
15 -16.7005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  10  1.....KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKSKERPYGHSLIAGMKKYPKK----------VVRGMSKRTIQRRSRVGVFLRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKLFQARYN 119
16 -16.6003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  10  3.....KFLKPGKVVIVTAGRYAGHKAVIVQNSDIATKERPYGRALLAGIKKYPKK----------VVRGMSKQTIARRSQVGVFLRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRHVFQARYN 121
17 -16.5003jbs_A mol:protein length:176 eL6  ali model follow..  15  31....RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEK-----------LTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIK 150
18 -16.5005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  16  31....RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEX-----------XXXXXXXXXXXXXXXXXKEIKAERVEDQKVVDKALIAEIK 150
19 -16.5003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  14  3.....KFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLK-------VTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVST-ETFEQPSQREEAKKVVKKAFEERHQ 123
20 -16.2003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  13  3.....KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRK-------VTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNK-DVFRDPALKRKARREAKVKFEERYK 123
21 -15.5005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  14  3.....KLLKSGRVVVVLNGRHAGKKGVVVNTWEGSK---QFAFCLVAGIEKAPLK-------VHKKMPAKKIEKRMRVKPFLKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFT 123
22 -15.4003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  12  3.....KLLKPGKVIIILNGRRAGKKAVIVNTYEGQTRERPYSYCLVAGIEKHPLK-------VNKSMTKKKIVKRSKVKAFIKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLE 124
23 -15.3005t2a_t mol:protein length:195 eL6  ali model follow..  13  30....RKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVSGPKYNGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKKKTLVSDARAQLQKKIDAALIAAIK 166
24 -15.3005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  13  6....RKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLISGPKYNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKPKGIVSDARAQLQKKVDAALIEAIR 142
25 -14.9005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  12  2.....SLLQAGRFVVMLQGRHAGKKAVVLAAYPEGTEDRKFPYAIVMGIEKYPKK-------VTKDMPTEVLVKKTQVKLFVKAVNFNHVMLTRHNVKDEDFFKKISV-AALKDAPAKKALLTEYAAVLRQKYL 126
26 -14.7003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  13  33.......CAPGVIAIILAGRFRGRRAVILKQLPHNGPLVSGPKYNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKKKTPVSDARAQLQKKIDAALIAAIK 166
27 -14.5003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  14  89....RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKK----------LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIK 210
28 -13.9005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  15  37....RSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLVTGPKVNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKL-RKKQDEGMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLS 167
29 -13.4003j92_E mol:protein length:284 eL6  ali model follow..  14  137....RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKK----------LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIK 258
30 -13.3005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  14  144....RASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKK----------LRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIK 265
31 -12.8004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  14  141....RASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKK----------LRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIK 262
32 -9.3702do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  16  11AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELK...................................................................................... 58

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.