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Query: 5xxb_X mol:protein length:141 Ribosomal protein uL24, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MKFSSQVSSSRRKSRKAHFSAPSSVRRKIMTAPLCKELRKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGETVTIGIHPSKVVITKAKLDKDRKALLERKSRATTKGKYTEKDVAMSQVDLast
1 -83.5005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model  100  1MKFSSQVSSSRRKSRKAHFSAPSSVRRKIMTAPLCKELRKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGETVTIGIHPSKVVITKAKLDKDRKALLERKSRATTKGKYTEKDVAMSQVD 141
2 -76.6003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  62  1MKFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN............... 126
3 -75.5003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  64  1MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEET... 139
4 -75.3002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  55  2AKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE............... 127
5 -74.6003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  61  1..MASIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKSILERKDRSKGKGKISAADKAMQQMD 143
6 -74.6005t2a_X mol:protein length:143 uL24  ali model follow..  62  1..MVSIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKAILERKDRSKGKGKISAADKAMQQMD 143
7 -73.9005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  39  2VKTNPFVSSQARKVRKSYFNAKKDAKHVAMSAPLSKELQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQAVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGHKKQ.... 138
8 -70.4005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  66  1........GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRKAILERK.................... 113
9 -54.3001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  31  1......MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSA............... 120
10 -21.6001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  19  1.................................MPRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKQRELALHASKVALVDPETGKATRVRKQIVDGKKVR.............. 105
11 -19.0005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  12  23.QRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKP-NSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKH-IKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRK............... 157
12 -18.0004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  24  1..............................................MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKETEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVR.............. 92
13 -17.9005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  30  1..............................................MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTATQEAPIHVSNVMVV................................... 74
14 -17.9005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  30  1..............................................MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTATQEAPIHVSNVMVV................................... 74
15 -17.7004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  24  3............................................VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVREKEAPLHASKVRPICPACGKPTRVRKKFLENGKK............... 95
16 -17.7003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  20  1..............................................MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVR.............. 92
17 -17.2004ce4_Y mol:protein length:216 MRPL24  ali model follow..  11  1MRLSALLALASKVTLPPNYRSLSDKRKNPPGTRRRRVPVEPISDEDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRY-IPSEAPLLHNQVKLVDPTDRKPTDVEWRFTEAGER............... 143
18 -17.1003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  25  2.............................................AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVR.............. 94
19 -15.9005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  11  56..................................DCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKH-IKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRK............... 158
20 -15.3003j7y_V mol:protein length:216 uL24  ali model follow..  10  43...................................PVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRY-IPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGER............... 143
21 -14.7003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  10  27.........LPHSEKFIKKSTPEFMKSDLKEV---DEKTSFKSEKEWKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTV-ITIPVSILGKDLRLV................................... 134
22 -11.4002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  25  2..........................................SSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPK........................................................... 41
23 -11.1005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  12  54...........................................LEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMD........................................................... 92
24 -10.8004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  22  85............................................IIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENA----AVPIPITLPVEGVKIVSKHKD.............................. 147
25 -10.8002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  22  12...................................QELRKYF-------KMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHE...................................................... 56
26 -10.7002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  20  7.............................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV------SIFGRATPVELDFSQV...................................... 60
27 -10.7003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  14  88............................................AVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVP----------------IPVTIKGDYVRLISKLQKEEAAA............. 155
28 -10.6002ckk_A mol:protein length:127 KIN17  ali model follow..  15  66...........................................LETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIV........................................................... 104
29 -10.4004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  20  1................................................FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLN........................................................... 34
30 -10.3005oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  18  37........................VRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF--RSFAFLHCKKLVENGG----FVCKTRHLVLA................................... 113
31 -10.2002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  11  6.............................................EVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKV------SIFGRETPVELTFGQV...................................... 59
32 -10.1001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  15  167...................GKPVPLKEEEVQN-ILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV------SIFGRMTPVELDFDQV...................................... 245
33 -10.0006duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  20  4.............................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV------SIFGRATPVELDFSQV...................................... 57
34 -9.9901nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  24  2.............................................QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV------TIFGRETPVELDFSQV...................................... 55
35 -9.5102e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  12  21...................................................GQTVRISQGPYKGYIGVVKDATESTARVELH........................................................... 51
36 -9.3004ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  8  1................................................LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLK---------------------IVPRLDYGKFDEIDPTTQQRKSRRPTFAHRAPPQ.... 68
37 -9.2505xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  12  21...................................................NKTVKIRQGGYKGKIGIVKEANGDRFRVELH........................................................... 51
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.