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Query: 5xxb_Y mol:protein length:146 Ribosomal protein eL27, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVKLLKSGRVVVVLNGRHAGKKGVVVNTWEGSKERQFAFCLVAGIEKAPLKVHKKMPAKKIEKRMRVKPFLKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNEKVGKVSKDLLFLRKKLRFLast
1 -88.5005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model  100  1MVKLLKSGRVVVVLNGRHAGKKGVVVNTWEGSKERQFAFCLVAGIEKAPLKVHKKMPAKKIEKRMRVKPFLKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKAAKKGLKKIFYEKFTNPVNEKVGKVSKDLLFLRKKLRF 146
2 -81.5003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  55  1MGKLLKPGKVIIILNGRRAGKKAVIVNTEGQTRERPYSYCLVAGIEKHPLKVNKSMTKKKIVKRSKVKAFIKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEV-KKLGKIFRDKFLEPVNKKTGEVSKDISFLHKKLYF 146
3 -76.7003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  48  1MAKFLKAGKVAVVVRGRYAGKKVVIVKPDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAF-KSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQ----------WFFSKLRF 136
4 -76.7003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  42  1MGKFMKPGKVVLVLAGRYSGRKAVIVKNDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLD-KTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNK----------WFFQKLRF 136
5 -75.8003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  34  1MTKFLKPGKVVIVTAGRYAGHKAVIVQNDIATKERPYGRALLAGIKKYPKKVVRGMSKQTIARRSQVGVFLRVVNHKHFLPTRYNVDMS---KELRGKINVSDASKRSRSKRLVRHVFQARYNAGSSM----------WFFQRLRF 134
6 -73.7005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  34  1..KFLKPGKVVIVTSGRYAGKKAVIVQNDSKSKERPYGHSLIAGMKKYPKKVVRGMSKRTIQRRSRVGVFLRVVNHKHFLPTRYNMDLS---RELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNR----------WFFQRLRF 132
7 -72.2005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  37  1.MSLLQAGRFVVMLQGRHAGKKAVVLAAPEGTEDRKFPYAIVMGIEKYPKKVTKDMPTEVLVKKTQVKLFVKAVNFNHVMLTRHNVKDEDFFKKISVVAALKDAPAKKALLTEYAAVLRQKYLNNKMA----------WFFKPLQF 139
8 -19.1002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  23  2..PAIEVGRICVKVKGREAGSKCVIVDIIDD------NFVLVTGPKDIT----------------------RRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIR............................. 92
9 -16.6003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  18  50LRKSIEVGKVAIILTGKHMGKRCIITKILNS------GLLAVVG----PYEING----------------LKRVDSRYLVVTSTNIFNFLNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVIDKIKEIR........... 170
10 -15.5005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  14  6..RYYQPGRLCVVQYGPDAGKLCFVVDIINQTR--DGAGVTGVKRQSMPVRYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKK....................... 134
11 -14.8003jbs_A mol:protein length:176 eL6  ali model follow..  21  30LRASLVPGTVLILLAGRFRGKRVVYLKHLED------NTLLISG----PFKVNG----------------LRRVNARYVIATSTKVSVEVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKA........ 144
12 -14.4005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  16  5LRKSCKPGTIAIILAGRFRGRRVVILKQLPRN-----GPLVISG----PMKYNG----------------IRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQK.................. 109
13 -14.0005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  23  30LRASLVPGTVLILLAGRFRGKRVVYLKHLED------NTLLISG----PFKVNG----------------LRRVNARYVIATSTKVSVEVNVEKFNVEYFAKEXXXXXXXXXXXXXXXXXXKEIKAERVEDQKVVDKA........ 144
14 -14.0005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  16  5..QFVEIGRVALINFGELVDKLAIIVDIVDDKR------VLIDVLEFDAPR--------------------QTIPIQRLKLTDYVAKIQRNAAPEAAKAAAKDFIKQFYESAWGKQVIARKNKAQMN................... 103
15 -13.2005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  22  36LRSSITPGTVLILLSGGHRGKRVVFLKQLAPS-----GLLLVTGVNGVP---------------------LRRVNQRYVIATTTKVDISVDVSSIKDEQFGASKKEKFAERKLRKKQDEGMFVQQSDSKAKQALPA.......... 149
16 -12.8005t2a_t mol:protein length:195 eL6  ali model follow..  14  29LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNG------LVVSGYNGVP---------------------IRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKTSKAGKKTLVSDAR. 150
17 -12.5003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  13  29LRKSCAPGVIAIILAGRFRGRRAVILKQLPHNG------LVVSGYNGVP---------------------IRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKTSKAGKKTPVSDAR. 150
18 -12.4005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  23  52TRANLKVGTVVIIVGGEHQGKRAVVVADQGA------GIVKVAG--------------------------VNEISQDYLIATSTSIDVA---ANATEAQVEAAAAKVPEMVDYLKAPFT........................... 139
19 -12.3003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  21  13..RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKK------VLIDGPKAGVPR--------------------QAINLGQVVLTPLTFALPRGARTATVSKKWAAAAAKKIAQRERRAALTERFQVMVLRKQ................ 126
20 -12.2003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  18  88LRASITPGTILIILTGRHRGKRVIFLKQLSS------GLLLVTG----PLVLNR----------------LRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQ........... 198
21 -12.0003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  19  63..HYICAGRLVRILRGPRQDRVGVIVDIVDANR------VLVENPEDAKMW--------------------HVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKAARVEAKKACAASTERYQLRVARRS................ 177
22 -11.8003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  13  23..RFVEPGRLCLIEYGPYAGKLCFIVDIVTITR------VIVDGAFITGVP--------------------MVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKGKKMIIKKKRDEATERFQVYFAKRE................ 137
23 -11.7003j92_E mol:protein length:284 eL6  ali model follow..  18  136LRASITPGTILIILTGRHRGKRVIFLKQLSS------GLLLVTG----PLVLNR----------------LRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQ........... 246
24 -11.4004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  18  140LRASITPGTILIILTGRHRGKRVVFLKQLAS------GLLLVTG----PLVLNR----------------LRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQ........... 250
25 -11.2005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  18  143LRASITPGTILIILTGRHRGKRVVFLKQLSS------GLLLVTG----PLSLNR----------------LRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKVDQ........... 253
26 -11.2003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  19  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQNR------ALVDGPCTQVRR--------------------QAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAK..................................... 85
27 -11.0005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  19  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQNR------ALVDGPCTRVRR--------------------QAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTK..................................... 85
28 -11.0004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  19  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQNR------ALVDG----PCTQVRR----------------QAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKAATRWAKKIEARERKAK.................... 103
29 -10.9005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  18  1..NYIRAGRLVRIIRGPRQDRVGVVVDIIDGNR------VLVENPADKKMW--------------------HVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEK..................................... 82
30 -10.3002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  34  14LRKYFKMGDHVKVIAGRFEGDTGLIVRVEENF.................................................................................................................. 45
31 -10.0006d90_M mol:protein length:198 eL14  ali model follow..  19  5..RFVEVGRVAYVSFGPHAGKLVAIVDVIDQNR------ALVDGPCTRVRR--------------------QAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTK..................................... 85
32 -9.6904ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  20  1....FQPGDRIEVLNGEQRGSKGIVTRTTKDI----------ATIKLNGFTTPLEFPISTLRKIFEPGDHVTVINGEHQGDAGLVLMVEQGQVTFMSTQTSREVTITANNLSK................................. 99
33 -9.6804adx_7 mol:protein length:126 RPL14E  ali model follow..  35  5..KFVQVGRVVYINYGADKGKLAVIVNIINQNR................................................................................................................. 35
34 -9.0305v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  20  3....VHKGDTVLVISGKDKGAKGKVLQAYPDRNR-----VLVEGVNRIKKHTAISTTQRGARSGGIVT.............................................................................. 61

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.