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Query: 5xxu_O mol:protein length:156 Ribosomal protein uS11, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAPKKSAKAATGEEGEAQGSGLGPATRDGEIVFGVAHIYASFNDTFIHVTDLSGRETLVRVTGGMKVKADRDESSPYAAMMAAADVAARCKELGISAVHVKVRAAGGTRSKTPGPGAQSALRALARSGLRIGRIEDVTPIPTDSTRRKSGRRGRRLLast
1 -90.9005xxu_O mol:protein length:156 Ribosomal protein uS11  ali model  100  1MAPKKSAKAATGEEGEAQGSGLGPATRDGEIVFGVAHIYASFNDTFIHVTDLSGRETLVRVTGGMKVKADRDESSPYAAMMAAADVAARCKELGISAVHVKVRAAGGTRSKTPGPGAQSALRALARSGLRIGRIEDVTPIPTDSTRRKSGRRGRRL 156
2 -84.9004d5l_O mol:protein length:151 40S RIBOSOMAL PROTEIN US11  ali model follow..  77  1MAPRKGK-----EKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151
3 -83.1005oql_t mol:protein length:150 40S ribosomal protein S14-like protein  ali model follow..  76  1MPPKKT------TRPAQENISLGPQVREGELVFGVARIFASFNDTFVHVTDLSGRETICRVTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKIRATGGNGTKTPGPGAQSALRALARSGMKIGRIEDVTPTPSDSTRRKGGRRGRRL 150
4 -82.9003j7a_P mol:protein length:151 40S ribosomal protein uS11  ali model follow..  79  1MASKKVK-----TPQPETAIVSGPQPKEGELVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMMAAQDVAARLKELGVTAIHIKLRASGGTKSKTPGPGAQSALRALARSGLKIGRIEDVTPIPTDSTRKKSGRRGRRL 151
5 -81.9006az1_O mol:protein length:144 ribosomal protein S11  ali model follow..  74  2.............SKKQEVKAYGPNVKKGDLVYGVVHIYASFNDTFVHVTDTSGRETYVKVTGGMKVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRAVGGVRTKSPGPGAQAALRALARAGMKIGRIEDVTPIPTDSTRRKGSRRGRRL 144
6 -81.7005opt_V mol:protein length:144 40S ribosomal protein S14, putative  ali model follow..  70  2.............SKKQEVKFYGSSAAKDELVYGVVHIYASFNDTFVHVTDMSGRETFCKITGGMKVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRATGGVGTRSPGPGAQAALRALARAGMKIGRIEDVTPIPTDSTRRKGSRRGRRL 144
7 -81.5005jpq_w mol:protein length:137 uS11  ali model follow..  78  1...................MSNVVQARDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRRGRRL 137
8 -80.3003j80_O mol:protein length:137 uS11  ali model follow..  78  1...................MANVVQAKDNSQVFGVARIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRRGRRL 137
9 -79.9006GSN Entity 38(prereleased)  ali follow..  83  1.............................SQVFGVARIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRRGRRL 127
10 -79.3005xyi_O mol:protein length:159 Ribosomal protein S14  ali model follow..  64  1MSAPEAAPADQTATTGKKDVQLGPVKRDGEIVMGVAHIYASKNDTFVHVTDLSGSETLARCTGGIAVRAQRDEATPYAAMLAAQAVAARLKELGVDGVHIKFRGEGGSSRRLPAQGAQSALRALARAGVKIGRIEDVTPLPHDSTRRKGGRRGRRL 159
11 -77.9003j0l_K mol:protein length:140 Ribosomal protein S14  ali model follow..  75  1................EVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREGGRRGRRL 140
12 -74.5004cvn_E mol:protein length:137 30S RIBOSOMAL PROTEIN S11  ali model follow..  59  1...................MSEEQVNIKKKEKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRRV 137
13 -63.8005mmj_k mol:protein length:138 30S ribosomal protein S11, chloroplastic  ali model follow..  31  1MAKPIP------KIGSRRNGRISSRKSARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTKR-GTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPG--------LGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRR.... 137
14 -63.6003j9y_k mol:protein length:129 30S ribosomal protein S11  ali model follow..  39  2................AKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRK-STPFAAQVAAERCADAVKEYGIKNLEVMVKGPG--------PGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRR.... 128
15 -63.4001fjg_K mol:protein length:129 30S RIBOSOMAL PROTEIN S11  ali model follow..  34  4....................KPSKKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRK-GTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTG--------AGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKA.. 128
16 -63.1005nd8_k mol:protein length:129 30S ribosomal protein S11  ali model follow..  35  2................ARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKK-STPFAAQMASETASKSAMEHGLKTVEVTVKGPG--------PGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRR.... 128
17 -62.4005v93_k mol:protein length:139 30S ribosomal protein S11  ali model follow..  32  1MPPAKKG-----PATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRK-STPFAAQLAAENAARKAQDHGVRKVDVFVKGPG--------SGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRR.... 138
18 -61.2006ha1_k mol:protein length:131 30S ribosomal protein S11  ali model follow..  34  4................ARKSNTRKRRVKKNIESGIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSRK-STPFAAQMAAETAAKGSIEHGLKTLEVTVKGPG--------SGREAAIRALQAAGLEVTAIRDVTPVPHNGCRPPKRRR.... 130
19 -60.9005o5j_K mol:protein length:138 30S ribosomal protein S11  ali model follow..  32  1......MAQAKKGGTAAKKGQKTRRREKKNVPHGAAHIKSTFNNTIVSITDPQGNVIAWASSGHVGFKGSRK-STPFAAQLAAENAARKAQEHGVKKVDVFVKGPG--------SGRETAIRSLQAAGLEVGTISDVTPQPHNGCRPPKRRR.... 137
20 -53.9005aj3_K mol:protein length:196 MITORIBOSOMAL PROTEIN US11M, MRPS11  ali model follow..  26  54.ARTPSHSSFSIYPPIPGQENSLRWAGKKFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGFRNAKK-GTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLG--------PGRLSAIKGLTMGGLEVISITDNTPIPHNGCRPRKARR.... 195
21 -52.8003jd5_K mol:protein length:197 28S ribosomal protein S11, mitochondrial  ali model follow..  27  58....PSRSSFSIYPPIPGQESSLRWAGKKFEEIPIAHIKASYNNTQIHVVSAAHQPLARASCGTEGFRNAKK-GTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLG--------PGRLSAIKGLTMGGLEVISITDNTPIPHNGCRPRKARR.... 196
22 -12.7005v7q_O mol:protein length:122 50S ribosomal protein L18  ali model follow..  12  1MAQSVSATRRISRLRRHTRLRKKLSGTAER-----LVVHRSARHIHVQLVNDLNGTTVAAASSIEADVRGVPGDKKARSVRVGQLIAERAKAAGIDTVVFDRGGYTYGGR-------AALADAARENGLSF......................... 122
23 -12.6003j3v_O mol:protein length:120 50S ribosomal protein L18  ali model follow..  20  1MITKTSKNAARLKRHARVRAKLSGTAERPR-----LNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLYHGR-------KALADAAREAGLKF......................... 120
24 -12.0001ovy_A mol:protein length:120 50S Ribosomal Protein L18  ali model follow..  17  1MITKVDRNAVRKKRHARIRKKIFGTTERPR-----LSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGR-------KALADAAREAGLEF......................... 120
25 -11.0005o60_P mol:protein length:127 50S ribosomal protein L18  ali model follow..  12  1MAPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQLVNDLNGTTLAAASSIEADVRAIDGDKKAHSVRVGQLIAERAKAAGVETVVFDRGGYTYGGR-------AALADAAREAGLKF......................... 127
26 -10.7005ool_P mol:protein length:180 39S ribosomal protein L18, mitochondrial  ali model follow..  11  49...TNRNPRNLELLSVARKERGWRTVFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTRNVACESIGRVLAQRCLEAGINFMVYQPTPWEAASDS------KRLQSAMTEGGVVL......................... 172
27 -10.4004wce_L mol:protein length:119 50S ribosomal protein L18  ali model follow..  12  1MISKIDKNKVRLKRHARVRTNLSGTAEKPR-----LNVYRSNKHIYAQIIDNKGVTLAQASSKDSDIATTATKVE--LATKVGEAIAKKAADKGIKEIVFDRGGYLYHGR-------KALAEAARESGLEF......................... 119
28 -10.3004ce4_S mol:protein length:180 MRPL18  ali model follow..  11  49...TNRNPRNLELLAVARKERGWGTVWPSREFWHRLRVIRTQHHIEALVEHRNGQVVVSASTREWAIKKHLYSTRNVACESVGRVLAERCLEAGINFMVYHPTPWEAASDS------KRLQHAMTEGGVVL......................... 172
29 -9.9302j28_O mol:protein length:117 50S RIBOSOMAL PROTEIN L18  ali model follow..  13  2...........DKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIANGSEVLVAASTVEKAIAEQLKYTGNKAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR-------QALADAAREAGLQF......................... 117
30 -9.6605mlc_Q mol:protein length:166 50S ribosomal protein L18, chloroplastic  ali model follow..  16  40..PLIQAKAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDTKMHTLAAASTMQKAISEYSAGPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGR-------KALADAAREHGLVF......................... 166
31 -9.3104v4i_M mol:protein length:112 50S ribosomal protein L18  ali model follow..  12  2...........ARLTAYERRKFRVRNRIKRTGRLRLSVFRSLKHIYAQIIDDEKGVTLVSAS---SLALKLKGNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGR-------KALAEGAREGGLEF......................... 112
32 -9.1302zvy_A mol:protein length:183 Chemotaxis protein motB  ali model follow..  13  10...KKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMF--KTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLRVVGMAATMRLSDRGPDDAINRRISLL 166
33 -9.0001nkw_M mol:protein length:114 50S ribosomal protein L18  ali model follow..  16  1MATATTIRRKLRTRRKVRTTTAASGRLR-------LSVYRSSKHIYAQIIDDSRGQTLAAAS----SAALKSGNKTDTAAAVGKALAAAAAEKGIKQVVFDRGSYKYHGR-------KALADAAREGGLDF......................... 114
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.