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Query: 5xy3_Y mol:protein length:138 Ribosomal protein L24, putative, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVKTNPFVSSQARKVRKSYFNAKKDAKHVAMSAPLSKELQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQAVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGHKKQLast
1 -78.3005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model  100  1MVKTNPFVSSQARKVRKSYFNAKKDAKHVAMSAPLSKELQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQAVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGHKKQ 138
2 -74.5002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  46  1MAKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE........... 127
3 -73.9005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  39  1.MKFSSQVSSSRRKSRKAHFSAPSSVRRKIMTAPLCKELRKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGETVTIGIHPSKVVITKAKLDKDRKALLERKSRATTKGKYTEKDVAM 137
4 -73.5003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  40  1.MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEE 138
5 -72.9003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  41  1.MKFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN........... 126
6 -72.9003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  36  1...MASIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKSILERKDRSSKSDKGKGKISAA 135
7 -72.2005t2a_X mol:protein length:143 uL24  ali model follow..  37  5.......KCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKAILERKDRSSKSDKGKGKISAA 135
8 -67.5005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  42  1.........GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRKAILERK................ 113
9 -56.9001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  28  1.......MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDS............ 119
10 -25.0001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  16  1..................................MPRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKQRELALHASKVALVDPETGKATRVRKQIVDGKKVRVAVASGK... 112
11 -22.3005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  8  23..QRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKP-NSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKH-IKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLIKTGE.. 166
12 -22.0004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  18  3.............................................VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVREKEAPLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAKCGG.. 104
13 -21.5004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  21  1...............................................MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKETEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGE... 99
14 -21.5005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  21  1...............................................MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTATQEAPIHVSNVMVVDSDGKPTRIGYRVDEETGKRVRISKRNGK.. 103
15 -21.3005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  21  1...............................................MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTATQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGKKVRIAKTNGK.. 103
16 -21.0003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  20  1...............................................MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKK...... 96
17 -20.4003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  22  2..............................................AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK 104
18 -20.4004ce4_Y mol:protein length:216 MRPL24  ali model follow..  11  1.MRLSALLALASKVTLPPNYRSLSDKRKNPPGTRRRRVPVEPISDEDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRY-IPSEAPLLHNQVKLVDPTDRKPTDVEWRFTEAGERVRVSTRSGR.. 152
19 -19.4005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  11  56...................................DCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKH-IKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGE.. 167
20 -18.6003j7y_V mol:protein length:216 uL24  ali model follow..  14  42...................................RPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRY-IPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRSGR.. 152
21 -17.4003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  8  27..........LPHSEKFIKKSTPEFMKSDLKEVDEKTSFKS---EKEWKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTV-ITIPVSILGKDLRLVADIDDEKTP...................... 143
22 -12.0005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  12  54............................................LEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMD....................................................... 92
23 -11.6002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  20  2...........................................SSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPK....................................................... 41
24 -11.4002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  24  12....................................QELRKYF-------KMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHE.................................................. 56
25 -11.4004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  17  85.............................................IIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENA----AVPIPITLPVEGVKIVSKHKD.......................... 147
26 -11.4004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  17  1.................................................FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLN....................................................... 34
27 -11.3001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  16  167....................GKPVPLKEEEVQN-ILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV------SIFGRMTPVELDFDQV.................................. 245
28 -11.3002ckk_A mol:protein length:127 KIN17  ali model follow..  5  66............................................LETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIV....................................................... 104
29 -11.2003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  18  88.............................................AVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ....................................................... 125
30 -11.2002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  22  7..............................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV----SVSIFGRATPVELDFSQV.................................. 60
31 -10.8005oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  15  37.........................VRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF--RSFAFLHCKKLVENGG----FVCKTRHLVLA............................... 113
32 -10.7002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  12  6..............................................EVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKV----LVSIFGRETPVELTFGQV.................................. 59
33 -10.5006duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  22  4..............................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV----SVSIFGRATPVELDFSQV.................................. 57
34 -10.4001nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  25  2..............................................QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV----MVTIFGRETPVELDFSQV.................................. 55
35 -10.1002lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  22  120..............................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKV------TIFGRETPVVLHVSEVEKIE.............................. 177
36 -10.0005xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  19  21....................................................NKTVKIRQGGYKGKIGIVKEANGDRFRVELH....................................................... 51
37 -10.0004ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  10  1.................................................LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPR................................................... 38
38 -9.8302e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  22  21....................................................GQTVRISQGPYKGYIGVVKDATESTARVELH....................................................... 51
39 -9.7405ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  22  127..............................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS-----SIFGRATPVELDFSQV.................................. 180
40 -9.3202xhc_A mol:protein length:352 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  24  296..............................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN-----TIFGRETPVVLHVSEV.................................. 349
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.