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Query: 5y05_A mol:protein length:262 msmeg_4306, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSENLYFQGHMKAEVSQQRSLLTLSEVDAELARIAHRGKNLAEQKRLDELTAQRGEVNDRLAALGIALEDLDAQVAKYESEIDSVRQREDRDRALLEGGSVGAKQVTEIQHELETLQRRQASLEEQLLEVMERREELMAERSEELRRVDELQTELTEAQQARDAALVELDQARHQCATRRDALVNAIDDQLVELYEKQRARGGAGAGPLQGRRCGACRIEIDRGEIARITAAADDDVVRCPECGAILLRVKQLast
1 -77.3005y05_A mol:protein length:262 msmeg_4306  ali model  100  1MGSSSSENLYFQGHMKAEVSQQRSLLTLSEVDAELARIAHRGKNLAEQKRLDELTAQRGEVNDRLAALGIALEDLDAQVAKYESEIDSVRQREDRDRALLEGGSVGAKQVTEIQHELETLQRRQASLEEQLLEVMERREELMAERSEELRRVDELQTELTEAQQARDAALVELDQARHQCATRRDALVNAIDDQLVELYEKQRARGGAGAGPLQGRRCGACRIEIDRGEIARITAAADDDVVRCPECGAILLRVKQ 256
2 -60.8004ilo_A mol:protein length:257 CT398  ali model follow..  15  6...................DALQSILAIQELDIKMIRLMRVKKEHQN--ELAKIQALKTDIRRKVEEKEQEMEKLKDQIKGGEKRIQEISDQINKLENQQAA-VKKMDEFNALTQEMTAANKERRTLEHQLSDLMDKQAGSEDLLISLKESLSSTENSSSAIEEEIRENIRKINEEGRSLLSQRTQLKETTDPELFSVYERLLNKKDRVVVPIENRVCSGCHIALTPQHENLVRK--QDHLVFCEHCSRILYWQEL 238
3 -60.4003na7_A mol:protein length:256 HP0958  ali model follow..  14  2................GSNTHLKQLIEISHLDKEIDSLEPLIREKRK--DLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE-IKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRAKNTSIVTIKKQACGGCFIRLNDKIYTEVLT--SGDMITCPYCGRILYAEGA 237
4 -17.4006gap_A mol:protein length:261 Outer capsid protein sigma-1  ali model follow..  14  17..........................SSKGLESRVSALEKTSQIH--SDTILRITQGLDDANKRIIALEQSRDDLVASVSDAQLAISRLESSIGALQTVVNG----DSSVTQLGARVGQLETGLAELRVDHDNLVARVDTAERNIGSLTTELSTLTLRVTSIQADFESRISTLERTAVTSAGAPLSIRNNRMT............................................................... 178
5 -17.2006gao_A mol:protein length:240 Outer capsid protein sigma-1  ali model follow..  11  3..........................HMEEIKKQVQVNVDDIRAA--NIKLDGLGRQIADISNSISTIESRLGEMDNRLVGISSQVTQLSNSVSQNTQSISS----GDRINAVEPRVDSLDTVTSNLTGRTSTLEADVGSLRTELAALTTRVTTEVTRLDGLINSGQNSIGELSTRLSNVETSMVTTAGRGLQ............................................................... 164
6 -14.7004lin_A mol:protein length:300 Tail needle protein gp26  ali model follow..  12  52..........................DVGAIAGKANEAGQGAYDA--QVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIAS----QTNVSALDGRVTTAENNISALQADVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVS................................................................... 209
7 -13.6003c9i_A mol:protein length:242 Tail needle protein gp26  ali model follow..  11  22..........................QATRLDASILPRNVFSKSY--LLYVIAQGTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDD----ESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQSLASPLN................................................................................. 165
8 -13.4004zkp_A mol:protein length:237 Tail needle protein gp26  ali model follow..  11  17..........................QATRLDASILPRNVFSKSY--LLYVIAQGTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDD----ESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADYVSKTATTSQSLASPLN................................................................................. 160
9 -12.7006gaj_A mol:protein length:133 Outer capsid protein sigma-1  ali model follow..  13  2...........................AEEIKKQVQVNVDDIRAA--NIKLDGLGRQIADISNSISTIESRLGEMDNRLVGISSQVTQLSNSVSQNTQSI----------SSLGDRINAVEPRVDSLDTVTSNLTGRTSTLEADVGSLRTELAALTTRVTTEVTRLDG........................................................................................ 130
10 -12.0002tma_A mol:protein length:284 TROPOMYOSIN  ali model follow..  13  49..........................KLKGTEDELDKYSEALKDA--QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADE----ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAEGKCAELEEEIKTVTNNLKSLEAQAEK............................................................... 213
11 -11.3001c1g_A mol:protein length:284 TROPOMYOSIN  ali model follow..  14  112..........................KLEEAEKAADESERGMKVI--ESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAEL----EGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAETKLEKSIDDLEDELYAQKLKYKAISEELDH............................................................... 276
12 -11.1005xg2_A mol:protein length:260 Chromosome partition protein Smc  ali model follow..  14  60..........................SLYEGEARIKRAEEEKERL--KAEILTGEARLPGLRERAENLRRLVEEKRAEISELERRLSSITSKRSGGSLES-QSFELRIKLSDLEKELELARKDLEKVLAEERAVREEIEVAKRRINELDTLIERERGELAKLRGRIERLERKRDKLKKALENPE........................................................................ 214
13 -11.1002bsg_A mol:protein length:487 FIBRITIN  ali model follow..  10  5.......................VLNDLPFVDGPPAEGQSRISWIKNGEEILGADTQYGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIEAQIGINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGLPVVGNPSSGMKHRIINNTDVITS.................................................... 190
14 -11.0001x0t_A mol:protein length:120 Ribonuclease P protein component 4  ali model follow..  18  1.......................................................................................................................................................MVDIVKRRDWEKKEKKKIAIERIDTLFTLAERVARYSPDLAKRYVELALEIQKKAKVKI-KWKRRYCKRCHTFLIPGVNARVRLRTKRMVITCLECGYI...... 103
15 -10.9002qih_A mol:protein length:157 protein UspA1  ali model follow..  11  12...............................................TDRIATAELGIAENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSM---VARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQKLCSQA.................................................................. 151
16 -10.7002efr_A mol:protein length:155 General control protein GCN4 and Tropomyosin 1 alpha chain  ali model follow..  7  1..........................RMKQLEDKVEELLSKNYHL--ENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDK----EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDELLSKNYHLENEVARLKK.......................................................................... 154
17 -10.5004ll8_E mol:protein length:235 SWI5-dependent HO expression protein 3  ali model follow..  12  3...............HMESKLLENLNLLKNENENLNSIFER-----KNKKLKELEKDYSELSNRYNEQKEKMDQLSKLAKNSSAIEQSCSEKLQNMEVNYNSLLESQNLYRDYSDEISKLNEKIGLLELELSNQNLNYGSDTSSNSDIELNLNKFNDSVKDLKSLETEKDSKLSKIITHSLDELN-------QSWLNLYQTNEN.................................................... 181
18 -10.5001wig_A mol:protein length:73 KIAA1808 protein  ali model follow..  17  1..................................................................................................................................................................................................................GSSGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMF..... 41
19 -10.1003fhn_A mol:protein length:706 Protein transport protein TIP20  ali model follow..  10  1................GAMGSMNGIDDLLNINDRIKQVQNERNELAS--KLQNLKQSLASNDTEVALSEVIAQDIIEVGASVE-GLEQLRAKYGDLQNKLEKVAVQQTQMQAGVDKLDSFERQLDELAEQP-----PDQFTLDDVKALHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTGKYNDVIIQRLATNWSNTFDQKLLEAQ................................................. 185
20 -10.1001x62_A mol:protein length:79 C-terminal LIM domain protein 1  ali model follow..  20  17........................................................................................................................................................................................................................MCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNL..... 51
21 -10.0002d8x_A mol:protein length:70 Protein PINCH  ali model follow..  21  1..................................................................................................................................................................................................................GSSGSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVL..... 41
22 -9.9704cgk_A mol:protein length:392 SECRETED 45 KDA PROTEIN  ali model follow..  15  33..........................KIAAQDNKISNLTAQQQEA--QKQVDQIQEQVSAIQAEQSNLQAENDRLQAESKKLEGEITELSKNIVSRNQSLEKQARSAQTNGAVTSYINTIVNSKSITE--AISRVAAMSEIVSANNKMLEQQKADKKAISEKQVANNDAINTVIANQQKLADDAQALTTKQAEL.............................................................. 196
23 -9.9001x6a_A mol:protein length:81 LIM domain kinase 2  ali model follow..  16  15......................................................................................................................................................................................................................GEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVII..... 51
24 -9.8902cor_A mol:protein length:79 PINCH protein  ali model follow..  25  12...................................................................................................................................................................................................................GLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKEL..... 51
25 -9.8902dar_A mol:protein length:90 PDZ and LIM domain protein 5  ali model follow..  12  21..................................................................................................................................................................................................................AGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTM..... 61
26 -9.8301x64_A mol:protein length:89 Alpha-actinin-2 associated LIM protein  ali model follow..  17  27........................................................................................................................................................................................................................LCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNL..... 61
27 -9.8202k3r_A mol:protein length:123 Ribonuclease P protein component 4  ali model follow..  20  4...............................................................................................................................................................YNEKKEKKRIAKERIDILFSLAERVFPYSPELAKRYVELALLVQQKAKVKI-KWKRRYCKKCHAFLVPGINARVRLRQKRMVVKCLECGHI...... 98
28 -9.7801v6g_A mol:protein length:81 Actin Binding LIM Protein 2  ali model follow..  22  12...................................................................................................................................................................................................................RLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPF..... 51
29 -9.6401nyp_A mol:protein length:66 PINCH protein  ali model follow..  20  2...................................................................................................................................................................................................................SMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPF..... 41
30 -9.6302d9k_A mol:protein length:75 FLN29 gene product  ali model follow..  17  19........................................................................................................................................................................................................................VCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKD. 57
31 -9.6101nyh_A mol:protein length:166 Regulatory protein SIR4  ali model follow..  8  21............................DITDSNTTEILTSVDVLGTHSQGTQQSNMYTSTQKTELEIDNKDSVTECSKDMKEDGLSFVDIVLSKAASALDEK---EKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQVNKEIK.................................................................................. 164
32 -9.6102dlo_A mol:protein length:81 Thyroid receptor-interacting protein 6  ali model follow..  19  16.......................................................................................................................................................................................................................EKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGL..... 51
33 -9.6001x3h_A mol:protein length:80 Leupaxin  ali model follow..  12  12...................................................................................................................................................................................................................AMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSF..... 51
34 -9.3302cuq_A mol:protein length:80 Four and a half LIM domains 3  ali model follow..  17  12...................................................................................................................................................................................................................NKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPL..... 51
35 -9.3202cur_A mol:protein length:69 Skeletal muscle LIM-protein 1  ali model follow..  24  1..................................................................................................................................................................................................................GSSGSSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKL..... 41
36 -9.2905u0p_2 mol:protein length:273 Mediator complex subunit 27  ali model follow..  7  13.....................KHKLLDLNQLHEQLAELRTICPSLPETGTSRKFEKSAQEAIEKVNSFYTHLKSSQNVFDYAEKSLQADSSNLLPTYLYNSEDLSNDTENNETKSINGKSALDLKEPHHSELHDNDNFQNSDINIESFKGDIEASGSILNELEFIFFHDTRGKFSVYCSSSKDDAITFSINRNPKILDYQHLYSK--------------------------------------CDFCKSLI..... 234
37 -9.2902d8z_A mol:protein length:70 Four and a half LIM domains 2  ali model follow..  19  1..................................................................................................................................................................................................................GSSGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQL..... 41
38 -9.2705mg8_B mol:protein length:294 Structural maintenance of chromosomes protein 6  ali model follow..  7  2.....................................................................ASWSHPQFEKGALEVLFQGPGSQIEKRANESNN----QREIADLSEQIVELESKRNDLHSALLEMGGNLTSLLTKKDSIANKISDQSEHLKVLEDVQRDKVSAFGKNMPQLLKLITR...................................................................... 115
39 -9.0004q4g_X mol:protein length:472 Peptidoglycan endopeptidase RipA  ali model follow..  10  45..........................TIAALIADVAKANQRLQDL--SDEVQAEQESVNKAMVDVETARDNAAAAEDDLEVSQRAVKDANAAIAAAQHRFDTSASSPDEIIATVTAAKTLSASSQAVMANLQRARTERVNTESAARLAKQKADKAAADAKASQDAAVAALTETRRKFDEQREEVQRLAAERDA............................................................... 224
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205