current user: public
If you have questions about the server, please let us know.

Query: 5yi4_A mol:protein length:145 Disrupted in schizophrenia 1 homolog,Nuclear distribution protein nudE-like 1, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst GSEFGPWKEDSHIVSAEVGEKCEAIGVKLLHLEDQLLGAMYSHDEALFQSLQGELQTVKETLQAMILQLQPTKEAGEASASYPTAGAQETEALVPRGSGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRKLast
1 -90.2005yi4_A mol:protein length:145 Disrupted in schizophrenia 1 homolog,Nuclear distribution protein nudE-like 1  ali model  100  1GSEFGPWKEDSHIVSAEVGEKCEAIGVKLLHLEDQLLGAMYSHDEALFQSLQGELQTVKETLQAMILQLQPTKEAGEASASYPTAGAQETEALVPRGSGFGTSPLTPSARISALNIVGDLLRKVGALESKLAACRNFAKDQASRK 145
2 -8.9205app_A mol:protein length:133 GENERAL CONTROL PROTEIN GCN4, OUTER MEMBRANE PROTEIN 100  ali model follow..  14  3................QIEDKIEEILSKIYHIENEI-------ARIKKLIQNVDVRSTENAARSRANEQKIAENKKAIENKADKADVEKNRADIAANSRAIATFRSSSQNIAALT-IEEILSKIYHIENEIARIKKLIK...... 126
3 -8.7606cc4_A mol:protein length:614 soluble cytochrome b562, lipid II flippase MurJ chimera  ali model follow..  12  2...............ADLEDNWETLNDNLKVIETKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLKSLAAVSSMTMFSRVGFARDAIVA............ 132
4 -8.5402v71_A mol:protein length:189 NUCLEAR DISTRIBUTION PROTEIN NUDE-LIKE 1  ali model follow..  12  110......YVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE........................................................................................... 157
5 -6.9505n2s_A mol:protein length:436 Soluble cytochrome b562,Adenosine receptor A1  ali model follow..  11  2..............SADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKIALVSVPGNVL--AVKVNQALRDATFC........ 153
6 -6.7104pxj_A mol:protein length:61 C-Jun-amino-terminal kinase-interacting protein 3  ali model follow..  32  10...............................................................................................................NALNVVNDLIAKVDQLSGEQEVLRGELEAAKQAK 44
7 -6.6702rng_A mol:protein length:79 Big defensin  ali model follow..  31  1......................................................................................................NPLIPAIYIGATSVWAYLVALVGAAAVTAANIRRASSDNHS.. 44
8 -6.6006c1q_B mol:protein length:422 Soluble cytochrome b562, C5a anaphylatoxin chemotactic receptor 1 chimera  ali model follow..  12  3........KDDDDVDADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRALVIFAVVFLVGVLGNALV............. 144
9 -6.5502xzr_A mol:protein length:114 IMMUNOGLOBULIN-BINDING PROTEIN EIBD  ali model follow..  14  3................QIEDKIEEILSKIYHIENEI-ARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDK-----------------IEEILSKIYHIENEIARIKKLIK...... 107
10 -6.5406gap_A mol:protein length:261 Outer capsid protein sigma-1  ali model follow..  10  18.......SKGLESRVSALEKTSQIHSDTILRITQGLDDA------------NKRIIALEQSRDDLVASVSDAQLAISRLESSIGALQTVVNGLDSSVTQLGARVGQLETGLAELR-HDNLVARVDTAERNIGSLTTELSTLTLR. 143
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.