current user: public

If you have questions about the server, please let us know.

Query: 5z7b_A mol:protein length:198 PadR family transcriptional regulator, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .
# Score Template Links and tools%idFirst GSAKDLMTLRSALLALLSSGPLTGYDASQRFGASVGFVWSGSDSQIYPELRKMEAEELLVGSDVPWGSKGATKTEYALSEKGWEALRKAWYEPVTYGPTRDPARLKAAYFEVGTNGDARRHLRAHIAHFEQQKIQSESMIDELKAKTHPTLARRLERSPKKEHERIVAFKVLAYEGQIARAQAEIEWAEKGLKLLDTLLast
1 -84.0005z7b_A mol:protein length:198 PadR family transcriptional regulator  ali model  100  1GSAKDLMTLRSALLALLSSGPLTGYDASQRFGASVGFVWSGSDSQIYPELRKMEAEELLVGSDVPWGSKGATKTEYALSEKGWEALRKAWYEPVTYGPTRDPARLKAAYFEVGTNGDARRHLRAHIAHFEQQKIQSESMIDELKAKTHPTLARRLERSPKKEHERIVAFKVLAYEGQIARAQAEIEWAEKGLKLLDTL 198
2 -73.8001yg2_A mol:protein length:179 gene activator AphA  ali model follow..  24  1......MSLPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGK-PDRKVYSITQAGRSALGEWFDQPTAHPTVRDEFSAKLMACSVQSAEPYRLQLAELVEESRKLVAHYQEIEAAYYAN-------------PAVLDKQQRLERLTLRRNLLVRQAWIQWADEVLAELNAM 178
3 -72.5003l9f_A mol:protein length:204 Putative uncharacterized protein smu.1604c  ali model follow..  17  24.MGRGSMQGKDIILGILSKKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGR-PNKNIYAITESGKKELASYLQSDVNDEIFKSDFLMRLFFGNSLNDDDLEQLIREEIERKEEKIKRLSENLEIWKKK-----------------GELTPTQEITIKYGLAQYKSTKKVLEEELAK.... 198
4 -71.8005x11_A mol:protein length:188 Transcriptional regulator  ali model follow..  23  2SAKDPMRVLKYAILGLLRKGELSGYDITSYFKEELGQFWSAKHSQIYPELKKLTDEGFITFRTTIQGTK-LEKKMYTLTDSGKQELHDWLIRHQPPETVKDEFMLKAYFISSLSRQEASDLFTDQLLKRKAKLSDLQGSYEKLMASAEP-----------MSFSSPDFGHYLVLTKALEREKNYVSWLESILAMIDE. 187
5 -60.0002rkh_A mol:protein length:180 Putative AphA-like transcription factor  ali model follow..  11  7.TLTPKEAVRLCALGTIASQPMRYSELAGSVRHFTSRIMGPSLELMGISIELLRYEGLVEAVD--DGQGMEDDAMLAISAAGRRELHSLLTARLRPDLSKLVVALKMRFLGLMEAEERAHQIDLLIEGVDSELARLADLRGSDGEGGS--------------------ALAAWLDHDMALLESRLAWLEDFRARL... 180
6 -29.7002esh_A mol:protein length:118 conserved hypothetical protein TM0937  ali model follow..  18  14........LASTILLLVAEKPSHGYELAERLAEGIEIPGIGHMGNIYRVLADLEESGFLSTE---DTTVSPPRKIYRITPQGKLYLREILRSLEDMKRRIETLE.............................................................................................. 108
7 -29.0006ez1_A mol:protein length:127 DNA binding protein  ali model follow..  20  14....DLTAFQKNILTVLGEEARYGLAIKRELEEYYG---EVNHGRLYPNLDDLVNKGLVE-----KSELDKRTNEYALTNEGFDAVVD.............................................................................................................. 90
8 -29.0001xma_A mol:protein length:145 Predicted transcriptional regulator  ali model follow..  14  35.......YVDTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSY--GEETQGKRRTYYRITPEGIKYYKQKCEEWELTKKVINKFV.............................................................................................. 130
9 -28.4003elk_A mol:protein length:117 Putative transcriptional regulator TA0346  ali model follow..  18  15........ITLYILKELVKRPMHGYELQKSMFETTGQ--ALPQGSIYILLKTMKERGFVISE--SVNEKGQQLTVYHITDAGKKFLCDHSQALQLARKIIDDLL.............................................................................................. 107
10 -28.2002zfw_A mol:protein length:148 Pex  ali model follow..  19  44.......LAVCYVLAVLRHEDSYGTELIQHLETHWPNY-RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDW............................................................................................................. 128
11 -28.1002e1n_A mol:protein length:138 Pex  ali model follow..  19  34.......LAVCYVLAVLRHEDSYGTELIQHLETHWPNY-RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDW............................................................................................................. 118
12 -27.9002dql_A mol:protein length:115 Pex protein  ali model follow..  15  22.......VAICYILYVLLQGESYGTELIQQLETEHPTY-RLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARL.......................................................................................................... 105
13 -27.8003f8c_A mol:protein length:126 Transcriptional regulator, PadR-like family  ali model follow..  19  12.......QTNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY--GDESQGGRRKYYRLTEIGHENMRLAFES.......................................................................................................... 95
14 -27.7001bm9_A mol:protein length:122 REPLICATION TERMINATOR PROTEIN  ali model follow..  13  19........LKLYMITMTEQERLYGLKLLEVLRSEFKEIFKPNHTEVYRSLHELLDDGILKQIVKKEGAKLQEVVLYQFKDYEAAKLYK.............................................................................................................. 100
15 -27.6002dqr_A mol:protein length:122 Replication termination protein  ali model follow..  13  19........LKLYMITMTEQERLYGLKLLKVLQSEFKEIFKPNHTEVYRSLHELLDDGILKQIVKKEGAKLQEVVLYQFKDYEAAKLYK.............................................................................................................. 100
16 -27.1005dym_A mol:protein length:117 PadR-family transcriptional regulator  ali model follow..  19  19.......YIDILIVSILEKKDCYGYEIAKQVRERSEF--ELKEGTMYLALKRMESKNLIKSYYSNEQSSGGRRKYYNLTNEGKDFLEIKKQE.......................................................................................................... 101
17 -26.1002co5_A mol:protein length:99 VIRAL PROTEIN F93  ali model follow..  13  11.......YYIILKVLVINGSRLEKKRLRSEILKRFD--IDISDGVLYPLIDSLIDDKILREEE------APDGKVLFLTEKGMKEFEE.............................................................................................................. 83
18 -25.8004esf_A mol:protein length:117 PadR-like transcriptional regulator  ali model follow..  19  11.......SLEGCVLEIISRRETYGYEITRHLNDL---FTEVVEGTVYTILVRLEKKKLVNIE--KPSDMGPPRKFYSLNEAGRQELELFWKK.......................................................................................................... 92
19 -25.5003hhh_A mol:protein length:116 Transcriptional regulator, PadR family  ali model follow..  18  13.......ILEGLVLAIIQRKETYGYEITKILNDQ---FTEIVEGTVYTILLRLEKNQWVIAE--KPSEKGPMRKFYRLTSSGEAELADFWQR.......................................................................................................... 94
20 -25.5004esb_A mol:protein length:115 Transcriptional regulator, PadR family  ali model follow..  26  9.......VLEGCILYIISQEEVYGYELSTKLNKH---FTFVSEGSIYPLLLRMQKEKLIEGT--KASSLGPKRKYYHITDKGLEQLEEFKQS.......................................................................................................... 90
21 -24.5003l7w_A mol:protein length:108 Putative uncharacterized protein SMU.1704  ali model follow..  26  9.......LIEYLILAIVSKHDSYGYDISQTIKLIA----SIKESTLYPILKKLEKAGYLSTYTQEHQG--RRRKYYHLTDSGEKHLVYLTKE.......................................................................................................... 87
22 -24.4005h20_A mol:protein length:111 Putative PadR-family transcriptional regulatory protein  ali model follow..  20  14.......MLEYCIMLLLHKEPAYASDIIQKLKEA----LIVVEGTLYPLLTRLKNDDLLSYE--VESTQGPPRKYYKLTGKGESFLGELEAS.......................................................................................................... 94
23 -22.1004ejo_A mol:protein length:123 Transcriptional regulator, PadR-like family  ali model follow..  21  21.......TLVMLVLSQL-REPAYGYALVKSLADH----IPIEANTLYPLMRRLESQGLLASE---DNGGSKPRKYYRTTDEGLRVLREVEAQ.......................................................................................................... 99
24 -15.2002qlz_A mol:protein length:232 Transcription Factor PF0095  ali model follow..  14  12.......KVRRDLLSHLTCMECYFSLLSSKVS--------VSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKSYVFTLTPEMFWYKGLDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGDMTQLAILHYLLLNGRATVEELSDRLEKISEM 202
25 -14.7003u1d_A mol:protein length:151 uncharacterized protein  ali model follow..  13  29.......ETRLDVLHQILAQPDGVLSVEELLYRNPD----ETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPTFYAVTGEGIALLRA.............................................................................................................. 107
26 -13.7001yyv_A mol:protein length:131 putative transcriptional regulator  ali model follow..  20  39...........LILVALRDGTHRFSDLRRKMG-------GVSEKMLAQSLQALEQDGFLNRVSYPV----PPHVEYSLTPLGEQALADWIEL.......................................................................................................... 115
27 -13.1004a5m_A mol:protein length:131 UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR YYBR  ali model follow..  17  28.........KGILFYHMIDGKKRFNEFRRICP-------SITQRMLTLQLRELEADGIVHREVYHQ----PPKVEYSLTEFGRTQMKEW............................................................................................................. 103
28 -12.9001z7u_A mol:protein length:112 hypothetical protein EF0647  ali model follow..  17  24.........KLSLMDELFQGTKRNGELMRALD-------GITQRVLTDRLREMEKDGLVHRESFNE----PPRVEYTLTPEGYASLCHW............................................................................................................. 99
29 -12.9003zpl_A mol:protein length:177 PUTATIVE MARR-FAMILY TRANSCRIPTIONAL REPRESSOR  ali model follow..  15  44.RDAGMPHVYYGLLVKLAESPRRRLRMTELAKYAK-----ITRSRLSHAVARLEKNGWVRREDCPSDKRG---QFAILTDEGYEVLRR--TAPGHVDAVRQAVFDRLTPEQQKSLGEIMRIVAEGLQ....................................................................... 159
30 -12.8003b73_A mol:protein length:111 PhiH1 repressor-like protein  ali model follow..  18  7.SGSWMTIWDDRILEIIHEGNGSPKELEDRDE-------RISKSSVSRRLKKLADHDLL---------QPLANGVYVITEEGEAYLNGEYDA.......................................................................................................... 83
31 -12.8005hs7_A mol:protein length:110 HTH-type transcriptional regulator YodB  ali model follow..  18  19.........NGLIIHVLMDGPKRFKEITETIP-------MISQKMLAERLKELEQNEIVERQVLPE----PVKVIYTLTEKGTAEMQAW............................................................................................................. 94
32 -12.8003f6v_A mol:protein length:151 Possible transcriptional regulator, ArsR family protein  ali model follow..  28  52.......PTRRRLVQLLTSGEQTVNNLAAHFP--------ASRSAISQHLRVLTEAGLVTPR------KDGRFRYYRLDPQGLAQLRALFDS.......................................................................................................... 122
33 -12.7003zmd_A mol:protein length:178 PUTATIVE TRANSCRIPTIONAL REGULATOR  ali model follow..  19  51.QPFGLTMNDYEILVNLSESEGDRMRMSDLATATM-----QSKSRLSHQITRMENANLVRRENCESDRRG---LFAVLTEHGLETMRK--VAPHHVASVRRHFIDLLAPEDLTELDKALKPIAEHLRGQRGR.................................................................. 171
34 -12.6003kp2_A mol:protein length:151 Transcriptional regulator TcaR  ali model follow..  14  36.....ISAEQSHVLNMLSIEALTVGQITEKQG--------VNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIK-LSNKGKKYIKE----KAIMSHIASDMTSDFDSKEIEKVRQVLEIIDYRIQSYTSKL................................................................. 151
35 -12.5002fsw_A mol:protein length:107 PG_0823 protein  ali model follow..  13  27.........TLLIIFQINRRIIRYGELKRAIP-------GISEKMLIDELKFLCGKGLIKKKQYPE----PPRVEYSLTPLGEKEIAKF............................................................................................................. 102
36 -12.5001ub9_A mol:protein length:100 Hypothetical protein PH1061  ali model follow..  10  16.......PVRLGIMIFLLPRRKAPFQIQKVLD--------LTPGNLDSHIRVLERNGLVKTY---KVIADRPRTVVEITDFGMEEAKRFLSS.......................................................................................................... 90
37 -12.4003f3x_A mol:protein length:144 Transcriptional regulator, marR family, putative  ali model follow..  17  35.....LSYLDFSILKATSEEPRSMVYLANRY--------FVTQSAITAAVDKLEAKGLVR-----RIRDSKDRRIVEITPKGRQVLLEANEVLRN--------LVNEMLSDVENVEELLEGLNKILSRIGSSKD................................................................ 144
38 -12.3005jls_A mol:protein length:155 Adhesin competence repressor  ali model follow..  14  35....KLTNTQEHILMLLSQQRLTNTDLAKALN--------ISQAAVTKAIKSLVKQDMLAGTKDTVDAR---VTYFELTELAKPIASEHTHHHDETLNVYNRLLQKF-------SAKELEIVDKFVTVFAEELEGLE............................................................. 149
39 -12.2002hzt_A mol:protein length:107 Putative HTH-type transcriptional regulator ytcD  ali model follow..  19  16.........KCVILCHLTHGKKRTSELKRLMP-------NITQKMLTQQLRELEADGVINRIVYNQ----PPKVEYELSEYGRSMLCAW............................................................................................................. 91
40 -12.1004gcv_A mol:protein length:168 Putative transcription protein  ali model follow..  13  14ARSLERVGEWWSIL--IMRDALQGLRRFDEFSRSLD----IAPNMLTRRLNALVEAGLLERQPYSQR---PLRYQYVPTAKGEDAFVAW............................................................................................................. 99
41 -12.0001uly_A mol:protein length:192 hypothetical protein PH1932  ali model follow..  19  20.......DTRRKILKLLRNKEMTISQLSEILG--------KTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEK-YYGRTADV.................................................................................................................... 85
42 -11.9005yi0_B mol:protein length:146 Zinc transport transcriptional regulator  ali model follow..  15  35....KLTSTQEAILMLLAEQISTNAKIAEKLK--------ISPAAVTKALKKLQEQELIKSSRATNDER---VVLWSLTEKAVPVAKEHATHHEKTLSTYQELGNKF-------TDEEQEVISKFLSALTEEFQ................................................................ 146
43 -11.9005yhx_A mol:protein length:146 Zinc transport transcriptional regulator  ali model follow..  14  35....KLTSTQEHILMLLAEQISTNAKIAEKLK--------ISPAAVTKALKKLQEQELIKSSRATNDER---VVLWSLTEKAVPVAKEHATHHEKTLSTYQELGNKF-------TDEEQEVISKFLSALTEEFQ................................................................ 146
44 -11.7002obp_A mol:protein length:96 Putative DNA-binding protein  ali model follow..  13  9QNGDGIDPAIVEVLLVLGATPWSLPKIAKRAQ--------LPMSVLRRVLTQLQAAGLADVSVEAD-----GRGHASLTQEGAALAAQLFPDP......................................................................................................... 95
45 -11.6002p4w_A mol:protein length:202 Transcriptional regulatory protein arsR family  ali model follow..  18  15.......ETRRRILFLLTKRPYFVSELSRELG--------VGQKAVLEHLRILEEAGLIESRVEKIPRGR--PRKYYMIKKGLRLEILLTPT.......................................................................................................... 89
46 -11.5005jlu_A mol:protein length:150 Adhesin competence repressor  ali model follow..  14  38....KLTNTQEHILMLLSQQRLTNTDLAKALN--------ISQAAVTKAIKSLVKQDMLAGTKDTVDAR---VTYFELTELAKPIASEHTHHHDETLNVYNRLLQKF-------SAKELEIVDKFVTVFAEELE................................................................ 149
47 -11.5004g6q_A mol:protein length:182 Putative uncharacterized protein  ali model follow..  15  24........LRWRITQLLIGRSLTTRELAELLPD-------VATTTLYRQVGILVKAGVLMVTAEHQVRGAVER-TYTLNTQA.................................................................................................................... 89
48 -11.4002f2e_A mol:protein length:146 PA1607  ali model follow..  18  15ARPLDVIGDGWSML--IVRDAFEGLTRFGEFQKSLG----LAKNILAARLRNLVEHGVMVAVPAES----GSHQEYRLTDKGRAAIRQW............................................................................................................. 99
49 -11.2004hqm_A mol:protein length:115 QsrR protein  ali model follow..  15  23.........NGLIINYL----SRSNDSSAHFSDMKRDLKTITPRALSLKLSELAQWELVEKQIIST----PVQIIYVLTEKGKAPIEAW............................................................................................................. 101
50 -11.2003df8_A mol:protein length:111 possible HxlR family transcriptional factor  ali model follow..  18  31...........LIISVLGNGST-----RQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRS-------GQITTYALTEKGMNPLLQYISV.......................................................................................................... 105
51 -11.2004b8x_A mol:protein length:147 POSSIBLE MARR-TRANSCRIPTIONAL REGULATOR  ali model follow..  16  29.KPYGLTFARYEALVLLTFSKSGELPMSKIGERLM-----VHPTSVTNTVDRLVRSGLVAKRPNPNDGRG---TLATITDKGREVVEA.............................................................................................................. 107
52 -11.2002eb7_A mol:protein length:146 146aa long hypothetical transcriptional regulator  ali model follow..  27  35.....LSYLDFLVLRATSDGPKTMAYLANRYF--------VTQSAITASVDKLEEMGLVVRVRDREDRR---KILIEITEKGLETFNK.............................................................................................................. 106
53 -11.1002d1h_A mol:protein length:109 109aa long hypothetical transcriptional regulator  ali model follow..  19  19.....ITDTDVAVLLKMVEKPITSEELADIFK--------LSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLLN.......................................................................................................... 99
54 -11.1004hqe_A mol:protein length:115 Transcriptional regulator QsrR  ali model follow..  16  23.........NGLIINYLSRCN----DCSAHFSDMKRDLKTITPRALSLKLSELAQWELVEKQIIST----PVQIIYVLTEKGKAPIEAW............................................................................................................. 101
55 -10.7004yif_A mol:protein length:164 MarR family protein Rv0880  ali model follow..  12  42NPSSPVSLSQLSALTTLANGAMTPGALAIR---------RVRPPSMTRVIASLADMGFVDRAPHPIDGR---QVLVSVSESGAELVKA-------ARRARQEWLAER----------LATLNRSERDILRSAADLMLALVDE........................................................ 156
56 -10.7004fht_A mol:protein length:157 PcaV transcriptional regulator  ali model follow..  15  36.....TTSPQYAVLNALVAEPGLD-------QRTVGERVGLDRSTIAEVVSRLGRRGLLDKVRDPQDGR---RSLLRLTDEGLRVHRR----GVRIARMNQVFLAPL---AADEQAVFFDLIRRVADAAEG................................................................... 145
57 -10.6003tgn_A mol:protein length:146 Adc operon repressor AdcR  ali model follow..  17  36.....LTNTQEHILMLLSEESLTNSELARRLN--------VSQAAVTKAIKSLVKEGMLETSKDSKDAR---VIFYQLTDLARP-----IAEEEHTLLTYEQVATQF---TPNEQKVIQRFLTALVGEIK.................................................................... 141
58 -10.6003boq_A mol:protein length:160 Transcriptional regulator, MarR family  ali model follow..  11  41.DETGLSLAKFDAMAQLARNPLSMGKLSGAL--------KVTNGNVSGLVNRLIKDGMVVKAMSADDRRS---FSAKLTDAGLTTFKQ.............................................................................................................. 118
59 -10.5003f6o_A mol:protein length:118 Probable transcriptional regulator, ArsR family protein  ali model follow..  18  18.......PTRRAVLGRLSRGPATVSELAKPFD--------MALPSFMKHIHFLEDSGWIRTHKQGR------VRTCAIEKEPFTAVEAWLAE.......................................................................................................... 88
60 -10.5002vxz_A mol:protein length:165 PYRSV_GP04  ali model follow..  20  4GHSREVLVRLRDILALLADGCKTTSLIQQRLG--------LSHGRAKALIYVLEKEGRVTRV------AFGNVALVCLSMDQYRQLVDGMIR.......................................................................................................... 81
61 -10.5006c28_A mol:protein length:186 Transcriptional regulator, MarR family  ali model follow..  15  78.....LTPAQFSVLLLLDANP----------QTEIATTLGILRPNFVAMLDALEGRGLCVRTRSPSDRR---SHILMLTDKGRATLAR--AKKLVATRHEDRLTELL---GRDNRDALLSMLATIAREF..................................................................... 186
62 -10.4002frh_A mol:protein length:127 Staphylococcal accessory regulator A  ali model follow..  34....SISFEEFAVLTYISENKEKEYYLKDIINHL-----NYKQPQVVKAVKILSQEDYFDKKRNEHDER---TVLILVNAQQRKKIES.............................................................................................................. 109
63 -10.4002oqg_A mol:protein length:114 Possible transcriptional regulator, ArsR family protein  ali model follow..  15  21.......ETRWEILTELGRADQSASSLATRLP--------VSRQAIAKHLNALQACGLVESV------KVGREIRYRALGAELNKTARTLER.......................................................................................................... 91
64 -10.4005hsm_A mol:protein length:160 Uncharacterized HTH-type transcriptional regulator Rv2887  ali model follow..  16  48.....LTLPEFVCLRMLSQSPLSSAELARHAS--------VTPQAMNTVLRKLEDAGAVARPASVSSGR---SLPATLTARGRALAKR.............................................................................................................. 120
65 -10.4003nqo_A mol:protein length:189 MarR-family transcriptional regulator  ali model follow..  37...GILTSRQYMTILSILHLPEEETTLNN-----IARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRA---INVKVTDLGKKVMVT.............................................................................................................. 113
66 -10.3004fx0_A mol:protein length:148 PROBABLE TRANSCRIPTIONAL REPRESSOR PROTEIN  ali model follow..  18  27.RPSGLTNTQFSTLAVISLSE--GSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR----VMAGADARCKRIELTAKGRAALQK.............................................................................................................. 107
67 -10.3002hr3_A mol:protein length:147 Probable transcriptional regulator  ali model follow..  16  29.QADPVQFSQLVVLGAIDRGDVTPSELAAA---------RMRSSNLAALLRELERGGLIVRHADPQDGR---RTRVSLSSEGRRNLYG-------NRAKREEWLVRAMHACLDESE-------------RALLAAAGPLLTRLAQFEEP................................................. 147
68 -10.2003u2r_A mol:protein length:168 Regulatory protein MarR  ali model follow..  20  40.SQFELSAQQYNTLRLLRSVHPEGMATLQIADRLI-----SRAPDITRLIDRLDDRGLVLRTRKPENRR---VVEVALTDAGLKLLKD.............................................................................................................. 118
69 -10.2003g3z_A mol:protein length:145 Transcriptional regulator, MarR family  ali model follow..  14  25.GQQDLNYNLFAVLYTLATEG-------SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRR---KRLLSLTETGKAYAAPLTESAQE---FSDKVFATF---GDKRTTRLFADLDALAEVMEKTISENKK............................................................ 145
70 -10.2004em0_B mol:protein length:178 Uncharacterized HTH-type transcriptional regulator SAR2349  ali model follow..  10  58.EKHNIYYGQWLILRDIKHQPTTLIEISHRRA--------IEKPTARKTLKALIENDLITVENSLEDKR---QKFLTLTPKGHELYEIVCLDVQK-----QQAVVAKTNISQDQMQETINVMNQIHEILLKEAHN............................................................... 177
71 -10.2003k0l_A mol:protein length:162 Repressor protein  ali model follow..  15  40.SALEISLPQFTALSVLAAKPLSNAKLAERSF--------IKPQSANKILQDLLANGWIEKAPDPTHGR---RILVTVTPSGLDKLNQ.............................................................................................................. 116
72 -10.2002nyx_A mol:protein length:168 Probable transcriptional regulatory protein, Rv1404  ali model follow..  18  42....NITIPQFRTLVILSNGPINLATLATLLG--------VQPSATGRMVDRLVGAELIDRLPHPTSRR---ELLAALTKRGRDVVRQ.............................................................................................................. 115
73 -10.1004hw0_A mol:protein length:104 DNA-binding protein Sso10a-2  ali model follow..  12  6.RKRGTMEIMFDILRNCEPKCGI---------TRVIYGAGINYVVAQKYLDQLVKVGALNIK------TENDRKIYEITEKGKLLRTHI............................................................................................................. 78
74 -9.9003bdd_A mol:protein length:142 Regulatory protein MarR  ali model follow..  17  29.....ISLTRYSILQTLKDAPLHQLALQERLQ--------IDRAAVTRHLKLLEESGYIIRKRNPDNQR---EVLVWPTEQAREALIT.............................................................................................................. 101
75 -9.8903bj6_A mol:protein length:152 Transcriptional regulator, MarR family  ali model follow..  16  34.LREGVTVGQRAILEGLSLTPATAPQLGAALQ--------MKRQYISRILQEVQRAGLIERRTNPEHAR---SHRYWLTPRGEAIITA.............................................................................................................. 110

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.