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Query: 6b4c_A mol:protein length:298 Viperin, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GGRVRTGQVPVSVNYHFSRKCNKECLFCFHTATTSHVEKPENAKRGLTLLKQAGMKKINFAGGEPFLYPKFLGEMIDFCKETLQLESVSIVTNGSLVKEQFLQKHGRNIDILAVSCDSFNEATNIKIGRGSGDNVQKLYEIGSWCQKYDIKFKLNTVVNKFNHLEDMNDHLNALQPFRWKCFQVLIVTGENDSDKTLRNAHSLTISDDEFDRFCERHSSQTCLVPEPNRLMAKSYLILDEYMRFLDRNGQQPSKSILEVGVQQALQAVFWDEEAFVERGGIYDWNKSSCSSDSKDLEWLast
1 -101.0006b4c_A mol:protein length:298 Viperin  ali model  100  1GGRVRTGQVPVSVNYHFSRKCNKECLFCFHTATTSHVEKPENAKRGLTLLKQAGMKKINFAGGEPFLYPKFLGEMIDFCKETLQLESVSIVTNGSLVKEQFLQKHGRNIDILAVSCDSFNEATNIKIGRGSGDNVQKLYEIGSWCQKYDIKFKLNTVVNKFNHLEDMNDHLNALQPFRWKCFQVLIVTGENDSDKTLRNAHSLTISDDEFDRFCERHSSQTCLVPEPNRLMAKSYLILDEYMRFLDRNGQQPSKSILEVGVQQALQAVFWDEEAFVERGGIYDWNKSSCSSDSKDLEW 298
2 -80.8005vsl_A mol:protein length:318 Radical S-adenosyl methionine domain-containing protein 2  ali model follow..  53  21.GNSTQRTTPVSVNYHFTRQCNYKCGFCFHTAKTSFVLPLEEAKRGLLLLKQAGLEKINFSGGEPFLQDRGLGKLVRFCKEELALPSVSIVSNGSLIRERWFKDYGEYLDILAISCDSFDEQVNALIGRGQGNHVENLQKLRRWCRDYKVAFKINSVINRFNVDEDMNEHIKALSPVRWKVFQCLLIEGENSGEDALREAERFLISNEEFETFLERHKEVSCLVPESNQKMKDSYLILDEYMRFLNCTGGRPSKSILDVGVEEAIKFSGFDEKMFLKRGGKYVWSKAD-----LKLDW 318
3 -57.0001tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A  ali model follow..  15  7...DKLGRPIRDLRLSVTDRCNFRCDYCMPKEPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRD-LDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIK-ATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKHIEIRFIEFMDVGNDNDFSKVVTKDEMLTMIEQHFEIDVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDFNVKAFIRSGVTDEELKEQFKALWQIRD. 313
4 -44.6005v1q_A mol:protein length:459 Radical SAM  ali model follow..  15  113..KHNILSFPLELVIYPSMYCDLKCGFCFLANRERNAKPAKDWERILRQAKDNGVLSVSILGGEPTRYFD-IDNLLIACEELK--IKTTITTNAQLIKKSTVEILAKKYITPVLSLQTLDSKLNFEL---MGVRPDRQIKLAKYFNEVGKKCRINAVYTKQSYEQELVDFCIENKIDRFSVANYSEVTGYTKIKKKYDLADLRRLNEYVTDYITQREANLNFATEGCH-RAKYTKMEIMSNGDILPCIAFLGVNQTKQNAFEKDLLDV-WYDDPLYGGIRSFRTKNSKCLS....... 422
5 -44.3006c8v_A mol:protein length:394 Coenzyme PQQ synthesis protein E  ali model follow..  15  12GSHMDVIPAPVGLLAELTHRCPLRCPYCSNPLERSAELDTQTWLRVLTEAAGLGVLHVHLSGGEPTARPD-IVEITAKCAELG--LYSNLITSGVGGALAKLDALYDGLDHVQLSVQGVDAANAEKI-GGLKNAQPQKMQFAARVTELGLPLTLNSVIHRGNI-HEVPGFIDLAVKLGAKRLEVAHTQYYG---WAYVNRAALMPDKSQVDESIRIVEAARERLKGQLVGWGRKLMNVTPQGKVLPCHAAETIPGLEFWYVTDHALGEIWTKSPAFAAYRGTSWMKEPCRS....... 316
6 -37.9005wgg_A mol:protein length:453 Radical SAM domain protein  ali model follow..  15  89..SMDRKSVVKALCLHISHDCNLRCKYCFASTGQRNMMSLEVGKKAIDFLISESGNEIDFFGGEPMMNFDVVKGIIEYARQKEK-FRFTLTTNGLLLNDENIKYINENMQNIVLSIDGRKEVNDRRIRIDGSGCYDDILPKFKYVAESRNQDNYYVRGTFTRENMDFSNDVLHLADEGFRQISVEPVVAAKDSGYDLREEDLPRLFEEYEKLAYEYVKRRKEGNWFNFFHFGHEYLAVTPEGDIYPC................................................... 365
7 -37.0006djt_A mol:protein length:331 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase  ali model follow..  14  65.........RCIQCTPSVIWCQQNCIFCWRVLPRDKEPKWEEPEVVYEKILAMHKRIIMSLSGEPTLYPY-LDELIKIFHKNG--FTTFVVSNGILTDV----IEKIEPTQLYISLDAYDLDSYRRICGGKKEYWESILNTLDILKEKKRTCIRTTLIRGYN--DDILKFVELYERADVHFIELKSYMHVGYSQKRLKKED--MLQHDEILKLAKMLDENSSYKLIDDSEDSRVALL............................................................. 314
8 -36.4004k36_A mol:protein length:392 Anaerobic sulfatase-maturating enzyme  ali model follow..  16  6...........LLIKPASSGCNLKCTYCFYHSKSYGIMRDEVLESMVKRVLNEANGHCSFAGGEPTLAGEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGPKEIHNLRKDCCGLDTFSKVERAAELFKKYKVEFNILCVVTSNT-ARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLECQFVVESDGSVYPCDFYVLDKWRLGNIQDMTMKEL-FETNKNHEFIKLSFKVHEECKK....... 319
9 -35.8002yx0_A mol:protein length:342 radical sam enzyme  ali model follow..  13  70.........RCLQMTPVLAWCTHNCIFCWRPMGTELPQPWDDPAFIVEESIKANPTHAAISSGEPMLYPY-MGDLVEEFHKRG--FTTFIVTNGTIPEREEMIKEDKLPTQLYVSITAPDIETYNSVNIPMPDGWERILRFLELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNM---SHQDIREFAEALVKHLPGYHIEDEYEPSRVVLIM........................................................... 324
10 -32.1004m7t_A mol:protein length:270 BtrN  ali model follow..  20  17.......KLFSMIEVEVNSQCNRTCWYCVSKRKETGEMDPALYKTLMEQLSSLDAGRISFHFGEPLLCKN-LDLFVGMTTEYIPRARPIIYTNGDFLTEKRLQTLELGIQKFIVTQHAGAKHKFRGV........................................................................................................................................................................... 141
11 -32.0004m7s_A mol:protein length:269 BtrN  ali model follow..  19  2......DKLFSMIEVEVNSQCNRTCWYCVSKRKETGEMDPALYKTLMEQLSSLDAGRISFHFGEPLLCKN-LDLFVGMTTEYIPRARPIIYTNGDFLTEKRLQTLELGIQKFIVTQHAGAKHKFRGV........................................................................................................................................................................... 127
12 -26.9005tgs_A mol:protein length:263 7-carboxy-7-deazaguanine synthase  ali model follow..  19  31GEGMVIGQKTMFVRTA---GCDYSCSWC-SAKKDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQ-LDAFIELLKENN--IRAALETQGTVYQD-----WFTLIDDLTISPKPPSS--------KMVTNFQKLDHILTSLQENDRAVSLKVVIFNDEDLEFAKTVHKRYPGIPFYL..................................................................................................................... 201
13 -23.0004njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  14  28GEGANAGRPAVFCRFA---GCNLWSGRE-DGENGGKFKDADALVATIAGLWPAAHRFVVCTGGEPMLQLDQ--PLVDALHAAG--FGIAIETNGSL-------PVLESIDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLD-----FLVQPMDGPSRDLNTKLAIDW............................................................................................................................ 204
14 -21.8004jy8_A mol:protein length:358 FEFE-HYDROGENASE MATURASE  ali model follow..  17  59......DEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLMTPEEIVERARLAVQFGAKTIVLQSGEPYYMPDVISDIVKEIKKMGVAVTLSL---GEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDT--SFENRLNCLLTLKELGYETGAGSMVLPGQTIDDLVDDLLFLKEHDFDMVGI.................................................................................................................. 237
15 -21.7005fep_A mol:protein length:358 [FeFe] hydrogenase maturase subunit HydE  ali model follow..  17  59......DEVHIRAIIEFSNVCRKNCLYCGLRRDNKNLMTPEEIVERARLAVQFGAKTIVLQSGEPYXMPDVISDIVKEIKKMGVAVTLSL---GEWPREYYEKWKEAGADRYLLRHETANPVLHRKLR--PDTSFENRLNCLLTLKELGYETGAGSMVLPGQTIDDLVDDLLFLKEHDFDMVGIGPF............................................................................................................... 240
16 -21.6003t7v_A mol:protein length:350 methylornithine synthase PylB  ali model follow..  15  57......NRVFLNCFIYFSTYCKNQCSFC-RNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIMISGLMDNATLLKAREKGANFLALYQETYDTELYRKL---VGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRV.................................................................................................................. 236
17 -21.0003c8f_A mol:protein length:245 Pyruvate formate-lyase 1-activating enzyme  ali model follow..  14  25................FFQGCLMRCLYCHNRDTGGKEVTVEDLMKEVRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEG--IHTCLDTNGFVRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLV---GVSNHRTLEFAKYLANKNVKVWIRYVVVPSDDDDSAHRLGEFTRDMNVEKIELLPYHELGKHK........................................................................................................ 208
18 -19.6004rtb_A mol:protein length:477 HydG protein  ali model follow..  12  88......KRIVLFAPLYLSNICINNCSYCSFRRENKELLSLEEAVDEAKAIREMGHTRILLVMGEPEDKTSYLEEIIPAIYSEVDIRRINVNI-APLTLKGYERLKKLKIGTYQLFQESYNPEVYREV-DGPKTNFLWRLNAVERAIEAGIDIGIGALFGLGDPLFELLGVIAHADYLK........................................................................................................................ 266
19 -19.1002a5h_A mol:protein length:416 L-lysine 2,3-aminomutase  ali model follow..  11  112.......RYPDRVLLLITDMCSMYCRHCTRRRQSDDSMPMERIDKAIDYIRN-QVRDVLLSGGDALLVSDTLEYIIAKLREIPHVEIVRIGSRTPVITPELVNMLKKYHPVLNTHFNHPNEIT------------EESTRACQLLADAGVPLGNQSVLLRGVNDCELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEII.............................................................................................. 312
20 -18.1004wcx_A mol:protein length:480 Biotin and thiamin synthesis associated  ali model follow..  12  84......NRIVIFAPLYVSNYCVNNCRYC-SNEQQRKKLTMEEVRREVEILEEMGHKRLAVEAGEVNCPIDYIVDVIKTIYDTKLKNGSIRRVNAATTVENYKKLKKVGIGTYVLFQETYHRPTYEYM-QGPKHDYDYHLTAMDRAMEAGIDVGLGVLYGLYDYKYETVAMLYHAN........................................................................................................................... 262
21 -17.9005l7j_A mol:protein length:459 ELP3 family  ali model follow..  11  7....TISGVTPVAVMTKPLPCPGKCIYCVLRAKSCEYQAYKQVALRLRIIQDMGKVELIIMGGTFLADITYQYGFIKDCYDQHRCVGLCIETRPDICGKAEIQRMIDGTTRVELGVQMLDDDIYKLVERG--HRVSDVAEATCLLREYGLKVHYHWMPSPEKDLALSRMVFERFCPDGLKLYPTMVVEGTILEQWWKEGRYTPYPNGTMTGLIAD................................................................................... 264
22 -17.6001olt_A mol:protein length:457 OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE  ali model follow..  14  47....RYPERPLSLYVHIP--CHKLCYFCGCNKIVTRQQHEQEIVHRAPLFAGRHVSQLHWGGGTPYLNKAQISRLMKLLRENFQFNEISIEVDPREIELDVLDHLRAGFNRLSMGVQDFNKEVQRLVNR---QDEEFIFALLNHAREIGFSTNIDLIYQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDAD................................................................................................. 259
23 -17.2005l7l_A mol:protein length:446 ELP3 family, ELP3 family  ali model follow..  11  9......SGVTPVAVMTKPLPCPGKCIYCVLRAKSCEYQAYKQVALRLRIIQDMGKVELIIMGGTFLADITYQYGFIKDCYDQHRCVGLCIETRPDICGKAEIQRMIDGTTRVELGVQMLDDDIYKLVERGH--RVSDVAEATCLLREYGLKVHYHWMPSPEKDLALSRMVFERFCPDGLKLYPTMVVEGTILEQWWKEGRYTPYPNGTMTGLIAD................................................................................... 264
24 -17.2001r30_A mol:protein length:369 Biotin synthase  ali model follow..  12  62............LLSIKTGACPEDCKYCPQSSRYKTLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTR--TYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLP........................................................................................................................ 230
25 -17.0005exi_A mol:protein length:331 Lipoyl synthase  ali model follow..  10  92.................GDQCTRRCDFCQIDTGKPAELDRDEPRRVADSVRTMGLRYATVTDDLPDGGAWLYAATVRAIKELNPSTGVELIPDFNGEPTRLAEVFESGPEVLAHNVETVPRIFKRIRPAFT---YRRSLGVLTAARDAGLVTKSNLILGLGETSDEVRTALGDLRDAGCDIVTITQYLRPSARHHPVER----WVKPEEFVQFARFAEGLGFAGVLAGPLVRSSY............................................................... 307
26 -16.3004r33_A mol:protein length:420 NosL  ali model follow..  12  95......PRLHTFVPLYTTNYCDSECKMCSMRKGNHRLSGRKEITEQLEILHHEGVRGVGFLTGEEDKHTRLAFRIGWAIRTALDLGFERVYFNGSMEQDEIDVLGEEDPVTMCVFQESYDRETYRRF-GVPKADFDRRVVSFDRWLDAGYYVNPGVLVLHDDLSAELVSLVAHGDHLR........................................................................................................................ 286
27 -15.4004u0o_B mol:protein length:296 Lipoyl synthase 2  ali model follow..  7  60.................GPTCTRACAFCQVEKGHAAAVDPEEPTKIAAAVATLGLRYVVLTDDLPDQGAGQFVATMAAIRQRCPGTEIEVLSPRLSQRDCIAQIVAAQPACYNHNLETVRRLQGPVRRGAT---YESSLRVLATVKELNPDIPTKSMLGLGETEAEIIETLKDLRRVGCDRLTLGQYLPPSLSHLPVVK----YWTPEEFNTLGNIARELGFSHVRSGPLVRSSY............................................................... 284
28 -15.4004jc0_A mol:protein length:438 Ribosomal protein S12 methylthiotransferase RimO  ali model follow..  11  142..............VKISDGCDRGCTFCSIPKGSLRSRSIEDITREVEDLLKEGKKEIILVAGIDLYRKQALPDLLRRLNSLNGEFWIRVMYHPDHLTEEIISAMLELVKYFDVPVQHGSDKILKLMGRTKSS--EELKKMLSSIRERFPDAVLRTSIIPGETEEDFEELKQFVEEIQFDKLGAFVYSDEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVILE....... 432
29 -14.8004fhc_A mol:protein length:368 Spore photoproduct lyase  ali model follow..  10  104.............AIPLATGCMGHCHYCYLQTTLGSKPYIDIFAQAQKYINERAPEITRFEAADHLT--HSLKKAIEFIGATDYGR-LRFVTKYEHVDHLLDARHNGK---TRFRFSINSRYVINHFEPGTSSFDGRL-AAARKVAGAGYKLGFVVIYRHEGWERGYFELFQEL............................................................................................................................ 274
30 -14.4003can_A mol:protein length:182 Pyruvate-formate lyase-activating enzyme  ali model follow..  14  7.........................................................VTFCGGEPLLHPEFLIDILKRCGQQG--IHRAVDTTL-LARKETVDEVMRNCELLLIDLKSMDSTVHQTFC---DVPNELILKNIRRVAEADFPYYIRIPLIENADEKNIKLSAEFLASLHPEIINLLPYHDIGKGK........................................................................................................ 141
31 -13.7006fd2_B mol:protein length:457 Putative apramycin biosynthetic oxidoreductase 4  ali model follow..  9  197...........ITSINGSFGCPYPCRFYCPYPRKIRTYPVERIVAEFRQCAELGITAAVFRDPVFSFHRDRTLELCQALKAADTGVPWWCETRIDRLDEEVVAALVAGCVGVEVGVESGDPDMQATAVR-KRLNLDTVRKFHAVARKAGLKLVFLFLILPRETRMSIRRTFDFILELGLADTEF.................................................................................................................. 374
32 -13.3003rf9_A mol:protein length:404 Ribosomal RNA large subunit methyltransferase N  ali model follow..  13  116...........TLCVSSQVGCALECKFCSTAQQNRNLRVSEIIGQVWRAAKIVGITNVVMMGGEPLLNLNNVVPAMEIMLDDFGFRRVTLSTSG--VVPALDKLGDMIDVALAISLHAPNDEIRDEI--NIETFLAAVRRYLEKSNANQGRVTIEYVMLDNDGTEHAHQLAELLKDTPCK-INLIPWNPFPGAPYGRSSNSRI----DRFSKVLMSYGFTTIVRKTRGDDIDAACGQL............................................................ 358
33 -10.3005ul2_A mol:protein length:744 OxsB protein  ali model follow..  15  304...........ALTLETSRGCDYRCTFCPRDRPLSVEQTLKQLDDILRAGKHFNIKP-EFIGELP-TEAQRIIDICEGLLKREEKIKFDFAARADSVYEPWHYCALAGADRIFIGVESGSNQQLKRYGKGT--TSEQNIIALRLVSALGINLRIGFIMQLMKGLDNLKENLDFLERTDMKPIDIGDMTYEELYDKLLND................................................................................................... 520
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.