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Query: 6b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTPDALGSDAARAARAAALLRAAANDLKRNDRAAEADLGLPPGSFGDYVSGRLPITWDLISRAAQAWPLNERDLLPIHNDTPQGLRMMRVKESEASSRIIERGGGPYYEYRDTAMSRQASYRPEWISMLRVVEDDDPDNPLVEWNKGHLLYQFTYFVGPVNYYFRSGGRSHCVPMNTGDSVWGLPFAPHSFTARSADEPAYILALTYGGELTGDAQRELATFGRAVTSSLALTPGDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPARAEWPELSALAEALGVSVRELLVPHTTTEADVRIQPGRTASRWSYPGPDAPAYRFTQLAGDPLHPHTTSLAVDVLTARPDAPLPPTYQHQYLYVLGEQPVSVRWRYNGEQYDGRLEPGDSAYVIPGIEFSLSAEKPTELLMLRIGGSATPDVRFALGAMPDGAIGRYIAEDRLWYLast
1 -123.0006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model  100  1MSTPDALGSDAARAARAAALLRAAANDLKRNDRAAEADLGLPPGSFGDYVSGRLPITWDLISRAAQAWPLNERDLLPIHNDTPQGLRMMRVKESEASSRIIERGGGPYYEYRDTAMSRQASYRPEWISMLRVVEDDDPDNPLVEWNKGHLLYQFTYFVGPVNYYFRSGGRSHCVPMNTGDSVWGLPFAPHSFTARSADEPAYILALTYGGELTGDAQRELATFGRAVTSSLALTPGDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPARAEWPELSALAEALGVSVRELLVPHTTTEADVRIQPGRTASRWSYPGPDAPAYRFTQLAGDPLHPHTTSLAVDVLTARPDAPLPPTYQHQYLYVLGEQPVSVRWRYNGEQYDGRLEPGDSAYVIPGIEFSLSAEKPTELLMLRIGGSATPDVRFALGAMPDGAIGRYIAEDRLWY 450
2 -102.0006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  30  1MEK-KIDFKPDSYLIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKQKISPSLIEKAVNIWPVNERDFYIVSDDCSSGILIMTSQDSIKSSRIMERAGKPYYEYRDTAMSKTAPFRPEWILELCKVENNDPENPKAQWNNGHFMHQFTYFIGEVNFYYK-EGKKHVAIMNTGDSMYITPFTPHTFTTRDGASQNGLILALTYGSIQQELSSLSLDCGSQYALDFTNHENASLSLLEYYFELSNLTKEKFAKRTNFSMETLADFFTKKKLPTFDELKIIAKALNVNSRDLMPNDLTESKVIVKTHDQCD---HWKYPESGNYEFYELASTTALPHSKAFEIDVSSSEDLNLDLKVGLHQYVYNIGDSALTINWNYENKTYQKSLNPGDSAYIKPFVPHNFRGNG--KILILRIGGKISGDSQRELSFVGRENTQRAISETMQWF 450
3 -88.6003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  17  1..........GSHMRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDENEPDPAAATALAEALSVEPSQLA-ADAHRNLTVVHKSAEEMHASRRPIQRDGIHFYNFYTLAAPE-GRVAPVVLDIL------CPSDRLPALNNGHLEPAITVNLGPGDINGRWGEEHGGDRWITGDSYVEPSYCPHSYSLAGDAPARIVSYTAQSNISPLMTENNWSTGAFEEALKALSGKVSAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSASETGLTVLRTLGRALGFDYRVLLPADDQHDG--VGKTWTTIEDSRRSRRTFGTYEAASMASAAHLPDLVGSFLRVDADGRGAD-LIDHAENHYVVT-EGRLTLEWDGPDGPASVELEPDGSAWTGPFVRHRWHGTG--TVLKFGSGAHLGYQDWLELTNTFEATLRRGRRDLAGWG 443
4 -50.1001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  18  2.......SNTKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGETLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILK-GVRDNVDYYVYNCLVRTKRAP----SLVPLVVDVLTDNPDDAKFN-SGHAGNEFLFVLGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVNF.................................................................................................................................................................................................................................................. 198
5 -47.0005u55_A mol:protein length:190 (S)-2-hydroxypropylphosphonic acid epoxidase  ali model follow..  20  2...................DVRTLAV-GKAHLEALLATRKMTLEHLQDVRHDATQDGLEHLQNVAQYLAIPLSEFFVGQTQSDLDDGVKIARRNGGFKREEIRGGVHYYTYEHLVTTNQDPGLMALRLDL-----HSDDEQPLRLNGGHGSREIVYVT-RGAVRVRWVGDNDEDVLNEGDSIFILPNVPHSFTNHVGGAKSEIIAINYG................................................................................................................................................................................................................................................. 190
6 -44.1001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  8  2......SLTDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQLLSSERSFPDDLNMKIHTLFPYAADTGLEIFEITLL--------------------DHHQQMSSPHALGVIEYIHVL-EGIMKVFFDEQWH--ELQQGEHIRFFSDQPHGYAAVTEKAVFQNIVAYPRR................................................................................................................................................................................................................................................ 182
7 -35.7005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  7  2...........................................................................................................................................................................................................................RIYSRLFQISSANYARQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGI------MSAIDCKIDVTKNEQSRVILRIDGKFL--------PYYKGQLDAGENLYFQSA................................................. 169
8 -31.0005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  22  8..........................................................................................................................................................................................................................................REVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLSRVLTDAGESMAR................................................................................................................................................ 79
9 -30.7003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  24  9.........................................................................................................................................................................................................................DKPISESAPRKAPEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGSMALQAAQE........................................................................................................................................... 102
10 -29.8004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  10  2....TQSLHYSSPRETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIRLLQTIPLRGSIPGGVPTDPTIYRFYEMVQIYGSTLKALVHEQFGDGIISAINF---------KLDIKKVPDPDGGERAVITLGK.................................................................................................................................................................................................................................................................................................. 149
11 -28.7003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  9  47MDRAAARIADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERRYEYM............................................................................................................................................................................................................................................................................................................................................................................ 132
12 -28.4003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  15  6LTLPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLMTNSADTRQMPSES............................................................................................................................................................................................................................................................................................................................................................... 104
13 -27.1002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  19  1MVRVPLTAEELERGQRLGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRITPAFFTIAAVARVLDLSLDDVAAVVTFGPVS............................................................................................................................................................................................................................................................................................................................................................................. 84
14 -27.0003fya_A mol:protein length:99 Regulatory protein  ali model follow..  14  21...........................................................................................................................................................................................................................................SKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK................................................................................................................................................ 91
15 -26.7003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  14  21...........................................................................................................................................................................................................................................SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK................................................................................................................................................ 91
16 -26.7003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  21  1.........................................................................................................................................................................................................................................GSSMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE.................................................................................................................................................. 72
17 -26.4002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  11  2.............................................................................................................................................................................................................................................IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDKMLNP................................................................................................................................................. 69
18 -26.3001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  23  2.............................................................................................................................................................................................................................................IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYD................................................................................................................................................ 71
19 -26.3003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  11  2..................................................................................................................................................................................................................................RKKEDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQ........................................................................................................................................... 86
20 -26.1004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  9  1..................................................................................................................................................................................................MGSSSSGLVPRGSHMMNGTDIKAKVYEDTLLETIMASPLNQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGE-DVYISTVFKILDGLGIDIVSAQTSDTETNG................................................................................................................................................. 110
21 -25.8002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  16  9.........................................................................................................................................................................................................................................SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNASPEST................................................................................................................................................ 81
22 -25.8002b5a_A mol:protein length:77 C.BclI  ali model follow..  15  9...........................................................................................................................................................................................................................................RKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEEEN.................................................................................................................................................. 77
23 -25.8004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  14  10...........................................................................................................................................................................................................................................SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK................................................................................................................................................ 80
24 -25.8005tk5_A mol:protein length:290 3-hydroxyanthranilate 3,4-dioxygenase  ali model follow..  12  53....................................................................................................................................................EEGEEVFYQLGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLR---------------------YVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEQYRTGKPIPDQLL-----------------KEPPFPLSTRSIMEPMSLDAWLDSHHRELQAGTPLSLFGDTYETQVIAYGQGS-SEGLRQNVDVWLWQLGSSVVTM------GGRRLSLAPDDSLLVLAGTSYAWERTQGSVALSVTQDPA............................ 284
25 -25.8004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  14  10...........................................................................................................................................................................................................................................SKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK................................................................................................................................................ 80
26 -25.7004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  15  10...........................................................................................................................................................................................................................................SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFEMLIKEILK................................................................................................................................................ 80
27 -25.7005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  16  12.........................................................................................................................................................................................................................................SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDTKNASPEST................................................................................................................................................ 84
28 -25.6004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  14  10...........................................................................................................................................................................................................................................SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK................................................................................................................................................ 80
29 -25.6004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  14  10...........................................................................................................................................................................................................................................SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFEMLIKEILK................................................................................................................................................ 80
30 -25.5001y7y_A mol:protein length:74 C.AhdI  ali model follow..  28  12...........................................................................................................................................................................................................................................VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELFC........................................................................................................................................................ 74
31 -24.9004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  16  9...........................................................................................................................................................................................................................................TQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD......................................................................................................................................................... 70
32 -24.7001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  10  3.....QSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADP---------EGGERAVITLGK.................................................................................................................................................................................................................................................................................................. 149
33 -24.4003fe5_A mol:protein length:285 3-hydroxyanthranilate 3,4-dioxygenase  ali model follow..  13  48....................................................................................................................................................EEGEEVFYQLGDMLLRVLERGKHRDVVIRQGEIFLLPAGVPHSPQRFANTVGLVIERRRLKTELDGLR---------------------------YVGDTTDVLFEKWFYCEDLGTQLAPIIQEFFSSEQYRTGKPNPDQLLKEPPFPLSTRSVMEPMCLEAWLDGHRKELQAGTPLSLFG-------------TYESQVMVHGQGSSEGLRRDVDVWLWQLGSSVVTM------EGQRLSLTLDDSLLVPAGTLYGWERGQGSVALSV................................. 274
34 -24.3003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  17  1......................................................................................................................................................................................................................................MKTDGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSRPTITTIRKVCGTLGISVHDFFDFPPYNEVE................................................................................................................................................ 77
35 -24.2003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  10  1............................................................................................................................................................................................................................MSSGVDLGTENLYFQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEYENFVFTNDKKKS........................................................................................................................................ 94
36 -24.1002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  26  6..........................................................................................................................................................................................................................................AKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELLP........................................................................................................................................................ 71
37 -23.2001sef_A mol:protein length:274 conserved hypothetical protein  ali model follow..  9  1...............................................MSLMGYKNNRVGYQKELLTSRAV-----------KKDNYAIIPHDGLVQNAVP----GFENVDISILGSPKLGA------TFVDYIATFHKNGQQTTGFGGDGIQTLVYVI-DGRLRVSDGQETH--ELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPE------------------------------------------------------------------------------------------EYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLIGQGMYNL------DNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDANREPELEGGS................. 268
38 -23.2003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  15  1....................................................................................................................................................................................................................................SNAMTIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQEDK.................................................................................................................................................. 76
39 -23.1001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  11  3TKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMY........................................................................................................................................................................................................................................................................................................................................................................... 89
40 -23.0002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  11  2............................................................................................................................................................................................................................................ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRIIVNKLE................................................................................................................................................ 71
41 -23.0001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  17  1........................................................................................................................................................................................................................................MNTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLSQTNVA............................................................................................................................................... 75
42 -22.9005fd4_A mol:protein length:324 ComR  ali model follow..  10  3.......................................................................................................................................................................................................................SSSSGLVPRGSHMEVWFMNDKEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLKFDVLRTPTYGNEDLAEKRDAMMTE................................................................................................................... 123
43 -22.8005y69_A mol:protein length:151 chain A  ali model follow..  17  4.............................................................................................................................................................................................................................................TIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKPLKYTVSILRSLSMISGLSVSDVLFELEDIEKN................................................................................................................................................ 73
44 -22.8003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  29  3.......................................................................................................................................................................................................................................AMTERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVSTKR.................................................................................................................................................... 73
45 -22.7002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  12  9...........................................................................................................................................................................................................................................TDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNEESEKE................................................................................................................................................ 79
46 -22.7002l49_A mol:protein length:99 C protein  ali model follow..  6  2..........................................................................................................................................................................................................................................SNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTNQIAPE................................................................................................................................................ 73
47 -22.6001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  15  13............................................................................................................................................................................................................................................EVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEKG................................................................................................................................................. 81
48 -22.6003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  19  13...........................................................................................................................................................................................................................................QALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKLEAMTPS................................................................................................................................................ 83
49 -22.6005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  14  4..........................................................................................................................................................................................................................................KDSIGLRIKTERERQQMSREVLCLGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYEMKNRLIKFPTYRNPDRIKSKLTLIEE.................................................................................................................. 106
50 -22.5002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  17  9...........................................................................................................................................................................................................................................RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMD........................................................................................................................................................ 71
51 -22.4001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  12  2TKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMY........................................................................................................................................................................................................................................................................................................................................................................... 88
52 -22.3003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  19  4......................................................................................................................................................................................................................................MSNNQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKIK.................................................................................................................................................... 75
53 -22.2002xiu_A mol:protein length:66 CYLR2  ali model follow..  9  2.............................................................................................................................................................................................................................................IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQWQPE.................................................................................................................................................... 66
54 -22.1001utx_A mol:protein length:66 CYLR2  ali model follow..  9  2.............................................................................................................................................................................................................................................IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE.................................................................................................................................................... 66
55 -22.1002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  21  10.............................................................................................................................................................................................................................................FSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKLNIDTVPIESGYTLE...................................................................................................................................... 88
56 -21.9001sq4_A mol:protein length:278 Glyoxylate-induced Protein  ali model follow..  11  72....................................................................................................................................IVELAPNGGSDKPEQDPNAEAVLFVV-EGELSLTLQGQVH--AMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDTEGRWSTTRF---------------------------------------------------------------------------------------VDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLGKAVYRL------NQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLY............................... 263
57 -21.9001rc6_A mol:protein length:261 Hypothetical protein ylbA  ali model follow..  9  1............................................................MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIP----GFENCDATILSTPKLGA------SFVDYLVTLHQNGGNQQGFGGEGIETFLYVI-SGNITAKAEGKTF--ALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERI------------------------------------------------------------------------------------------HYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILGQGVYNL------DNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRD........................ 258
58 -21.7003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  11  3......TQEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSIARE................................................................................................................................................................................................................................................................................................................................................................................ 78
59 -21.5004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  17  2.............................................................................................................................................................................................................................................LGTRLKAARIRAGYSQKQLGMLVGMDSARMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDELAE................................................................................................................................................. 73
60 -21.4003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  13  2.............................................................................................................................................................................................................................................LIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQ................................................................................................................................................. 73
61 -21.0005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  11  2...................................................................................................................................................................................................................................ASHERTQPQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPPIYLLLHFYIEGQITDRQLADLRGKIRE................................................................................................................................................. 80
62 -20.9003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  19  13...........................................................................................................................................................................................................................................VYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEG............................................................................................................................................................... 68
63 -20.3001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  25  1............................................................................................................................................................................................................................................SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSVDWLLNGTSDSN.................................................................................................................................................. 67
64 -20.2002qfc_A mol:protein length:293 PlcR protein  ali model follow..  10  1........................................................................................................................................................................................................................................MQAEKLGSEIKKIRVLRGLTQKQLSE--NIHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVW...................................................................................................................... 99
65 -20.1002jvl_A mol:protein length:107 TrMBF1  ali model follow..  7  19VDRSDDIIKPKTVGKEVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANIGAPRLGPK............................................................................................................................................................................................................................................................................................................................................................................. 105
66 -19.9001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  21  2...........................................................................................................................................................................................................................................QTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGV-TKRPRFLFEIAMALNCDPVWLQYGTKRGKAA................................................................................................................................................ 71
67 -19.7005a7l_A mol:protein length:80 CI  ali model follow..  22  2..........................................................................................................................................................................................................................................QTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLM......................................................................................................................................................... 73
68 -19.6004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  12  23........TAAALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLTEQIDLFIPKQE.................................................................................................................................................................................................................................................................................................................................................................................. 94
69 -19.6003zhi_A mol:protein length:83 CI  ali model follow..  23  1........................................................................................................................................................................................................................................MLKTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSAYVASVQSPDQNRIYLLAKTLGVSEAWLM......................................................................................................................................................... 74
70 -19.5003h7j_A mol:protein length:243 Bacilysin biosynthesis protein bacB  ali model follow..  13  50..................................................................................................................................................HQHKEVQIGMVV-SGELMMTVGDVTR--KMTALESAYIPPHVPHGARNDTDQEVIAIDIKRLKADETYTSPEDYFLDIFKTRDLLP------GMEVTFFVEDWVEIMLAKIPGNGGEMPF--------------------------------------------------------------------------------------------HKHRNEQIGICIGGYDMTV------EGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINI............................... 217
71 -19.4001sq8_A mol:protein length:64 dh434  ali model follow..  26  2............................................................................................................................................................................................................................................LMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGK-AKRPRFLPELARALGVAVDWLLNGA...................................................................................................................................................... 64
72 -19.3003zhm_A mol:protein length:79 CI  ali model follow..  22  1..........................................................................................................................................................................................................................................KTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLM......................................................................................................................................................... 72
73 -19.3006b8w_A mol:protein length:95 XRE family transcriptional regulator  ali model follow..  9  25........................................................................................................................................APGALSESTPHEAGVIEHVVVI-SGELEMKIDGEWR--TLYPDQGVRFAGDKPHAYRNSSSRPVHFHSLIHYPR................................................................................................................................................................................................................................................ 95
74 -19.2002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  28  1............................................................................................................................................................................................................................................SISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSVDWLLNGT...................................................................................................................................................... 63
75 -19.1005d50_A mol:protein length:199 Repressor  ali model follow..  12  11..................KNLNEILRDFDDTQLRFAERVKRSQNLVNRWCTGIKNIGPNAARIIEEAARKEKFWLDVDHELDA------------------------------------------------------------------------------------------------------------------------------------VQADIFIPATEDGEWTVEKQAAATLNAWMRKDTEMTSEKKVAVAAGIGPATVNRIMKAEVSTTIGVLSSLARAFGHEAYEMIIPVGAPG.................................................................................................................................................. 165
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205