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Query: 6b9s_A mol:protein length:457 Methylphosphonate synthase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEKKIDFKPDSYLIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKQKISPSLIEKAVNIWPVNERDFYIVSDDCSSGILIMTSQDSIKSSRIMERAGKPYYEYRDTAMSKTAPFRPEWILELCKVENNDPENPKAQWNNGHFMHQFTYFIGEVNFYYKDPEGKKHVAIMNTGDSMYITPFTPHTFTTRDGASQNGLILALTYGSKLTGDIQQELSSLSLDCGSQYALDFTNHENASLSLLEYYFELSNLTKEKFAKRTNFSMETLADFFTKKKLPTFDELKIIAKALNVNSRDLMPNDLTESKVIVKTHDQCDHWKYPESGNYEFYELASTTALPHSKAFEIDVSSSEDLNLDLKVGLHQYVYNIGDSALTINWNYENKTYQKSLNPGDSAYIKPFVPHNFRGNGKILILRIGGKISGDSQRELSFVGRENTQRAISETMQWFDPKGSNSLast
1 -134.0006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model  100  1MEKKIDFKPDSYLIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKQKISPSLIEKAVNIWPVNERDFYIVSDDCSSGILIMTSQDSIKSSRIMERAGKPYYEYRDTAMSKTAPFRPEWILELCKVENNDPENPKAQWNNGHFMHQFTYFIGEVNFYYKDPEGKKHVAIMNTGDSMYITPFTPHTFTTRDGASQNGLILALTYGSKLTGDIQQELSSLSLDCGSQYALDFTNHENASLSLLEYYFELSNLTKEKFAKRTNFSMETLADFFTKKKLPTFDELKIIAKALNVNSRDLMPNDLTESKVIVKTHDQCDHWKYPESGNYEFYELASTTALPHSKAFEIDVSSSEDLNLDLKVGLHQYVYNIGDSALTINWNYENKTYQKSLNPGDSAYIKPFVPHNFRGNGKILILRIGGKISGDSQRELSFVGRENTQRAISETMQWFDPKGSNS 457
2 -102.0006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  30  1MSTDALGSDAARAARAAALLRAAANDLKRNDRAAEADLGLPPGSFGDYVSGRLPITWDLISRAAQAWPLNERDLLPIHNDTPQGLRMMRVKESEASSRIIERGGGPYYEYRDTAMSRQASYRPEWISMLRVVEDDDPDNPLVEWNKGHLLYQFTYFVGPVNYYFR--GGRSHCVPMNTGDSVWGLPFAPHSFTARSADEPAYILALTYGGE-----LTGDAQRELATFGRAVTSSLALTPGDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPARAEWPELSALAEALGVSVRELLVPHTTTEADVRIQPGRTASYPGPDAPAYRFTQLAGDPLHPHTTSLAVDVLTARPDAPLPPTYQHQYLYVLGEQPVSVRWRYNGEQYDGRLEPGDSAYVIPGIEFSLSAEKELLMLRIGGSATPDVRFALGAMPDGAIGRYIAEDRLWY....... 450
3 -96.3003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  16  1.........GSHMRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDENEPDPAAATALAEALSVEPSQLA-ADAHRNLTVVHKSAEEMHASRRPIQRDGIHFYNFYTLAAP--EGRVAPVVLDILC-----PSDRLPALNNGHLEPAITVNLGPGDINGRWGEENHGGDRWITGDSYVEPSYCPHSYSLAGDAPARIVSYTAQSNISPLMTEANNWS----TGAFEEALKALSGKVSAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSASETGLTVLRTLGRALGFDYRVLLPADDQHDGVGKTWTTIEDSRRSRRTGTYEAASMASAAHLPDLVGSFLRVDADGRGA--DLIDHAENHYVVTEGRLTLEWDGPDGPASVELEPDGSAWTGPFVRHRWHGTGTVLKFGSGAHLGYQDWLELTNTFEATLRRGRRDLAGWGYDN.... 446
4 -55.5005u55_A mol:protein length:190 (S)-2-hydroxypropylphosphonic acid epoxidase  ali model follow..  16  2..................DVRTLAV-GKAHLEALLATRKMTLEHLQDVRHDATQDGLEHLQNVAQYLAIPLSEFFVGQTQSDLDDGVKIARRNGGFKREEIRGGVHYYTYEHLVTTNQDPGLMALRLDLHSDDEQPLRL-----NGGHGSREIVYVTGAVRVRWVGDNDELKEDVLNEGDSIFILPNVPHSFTNHVGGAKSEIIAINY......................................................................................................................................................................................................................................................... 189
5 -55.2001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  16  2......SNTKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGETLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILK-GVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKF-----NSGHAGNEFLFVLGEIHMKWGD-KENPKEALLPTGASMFVEEHVPHAFTAAGTGSAKLIAVNF.......................................................................................................................................................................................................................................................... 198
6 -51.3001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  9  1....MSLTDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQLLSSERSFPDDLN--------------MKIHTLFPYAADTGLEIFEITLLDHHQQMSSP------HALGVIEYIHVLGIMKVFFDE-----QWHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIVAYPRR....................................................................................................................................................................................................................................................... 182
7 -38.1005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  10  1MRIYSRSSANYARQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPL------RGNQNIINDPLIYRFNELFKVYGSSLRGIIHEEFGDGIMSAIDCKID---------VTKNEQSRVILRIGKFL--------PYYKGQLDAGENLYFQSA.............................................................................................................................................................................................................................................................................. 169
8 -32.4004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  7  1MTQSLHYSSPR--ETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIRLLQTIPLRGSIPGGVPTDPTIYRFYEMVQIYGSTLKALVHEQFGDGIISAI---------NFKLDIKKVPDPDGGERAVITLGKY......................................................................................................................................................................................................................................................................................................... 150
9 -31.1005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  11  2......AMTALLREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLSRVLTDAGESMAR..................................................................................................................................................................................................................................................................................................................................................................................... 79
10 -30.1003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  11  15.SAPRKAPEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGSMALQAAQED............................................................................................................................................................................................................................................................................................................................................................................... 103
11 -28.8001sef_A mol:protein length:274 conserved hypothetical protein  ali model follow..  12  1..............................................MSLMGYKNNRVGYQKELLTSRAV-----------KKDNYAIIPHDGLVQNAVP----GFENVDISILGSPKLGATFVDYIATFHKNGQQTTG------FGGDGIQTLVYVIGRLRVSDGQ-----ETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQ--------------------------------------------------------------------------------------------PLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLI-SGQGMYNLDNE----WYPVEKGDYIFMSAYVPQAAYAVGR............................................ 246
12 -28.1003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  13  49.RAAARIADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERRYEYM.................................................................................................................................................................................................................................................................................................................................................................................... 132
13 -27.8003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  11  8LVPRGSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK..................................................................................................................................................................................................................................................................................................................................................................................... 91
14 -27.5003fya_A mol:protein length:99 Regulatory protein  ali model follow..  11  8LVPRGSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK..................................................................................................................................................................................................................................................................................................................................................................................... 91
15 -27.5002b5a_A mol:protein length:77 C.BclI  ali model follow..  9  1........................................................................................................................................................................................................................................MINEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEEEN.................................................................................................................................................... 77
16 -27.4004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  12  2.....SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK..................................................................................................................................................................................................................................................................................................................................................................................... 80
17 -27.4004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  12  2.....SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK..................................................................................................................................................................................................................................................................................................................................................................................... 80
18 -27.4003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  14  2............SSMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE....................................................................................................................................................................................................................................................................................................................................................................................... 72
19 -27.3004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  12  2.....SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFEMLIKEILK..................................................................................................................................................................................................................................................................................................................................................................................... 80
20 -27.2004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  12  2.....SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFEMLIKEILK..................................................................................................................................................................................................................................................................................................................................................................................... 80
21 -27.2004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  12  2.....SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK..................................................................................................................................................................................................................................................................................................................................................................................... 80
22 -27.1001y7y_A mol:protein length:74 C.AhdI  ali model follow..  14  1MQSH--HDHYADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELFC............................................................................................................................................................................................................................................................................................................................................................................................. 74
23 -27.1001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  14  2...............IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE....................................................................................................................................................................................................................................................................................................................................................................................... 69
24 -27.0003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  12  13......PDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLK...................................................................................................................................................................................................................................................................................................................................................................................... 89
25 -26.8001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  6  10..............................................................................................................................................................................................................................................IRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILQMIPLRGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGK................................................................................. 149
26 -26.8003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  12  1MRKK---EDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQ................................................................................................................................................................................................................................................................................................................................................................................ 86
27 -26.6002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  8  2....MSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNASPES...................................................................................................................................................................................................................................................................................................................................................................................... 80
28 -26.5005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  11  14................................................................................................................................................................................................................................................TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDTKNASPES................................................................................................................................................... 83
29 -26.2002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  16  2...............IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDKMLNP...................................................................................................................................................................................................................................................................................................................................................................................... 69
30 -25.9006b8w_A mol:protein length:95 XRE family transcriptional regulator  ali model follow..  7  1.........................................................................................................QAMVVKPLFPWDETLKFDHFSIILAPGALSESTP------HEAGVIEHVVVIGELEMKIDG-----EWRTLYPDQGVRFAGDKPHAYRNSSSRPVHFHSLIHYPR....................................................................................................................................................................................................................................................... 95
31 -25.8005tk5_A mol:protein length:290 3-hydroxyanthranilate 3,4-dioxygenase  ali model follow..  10  53...................................................................................................................................................EEGEEVFYQLGDMVLRVLE-QGKHRDVVIRQGEIFLLPARVPHSPQRFANT---VGLVVERRRLETELDGLRYYVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSS-----EQYRTGKPIPDQLLKEPPFPLSTRSIMEPMSLDAWLDSHHRELQAGTPLS------------------------------------DTYETQVIAYGQGSSEGLRQNVDVWLWQLEGSSVVTMGGR----RLSLAPDDSLLVLAGTSYAWERTQGSVALSV...................................... 279
32 -25.8004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  11  1........................................................................................................................................................................................................................................SFQKIYSPTQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD........................................................................................................................................................... 70
33 -25.7003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  12  1MSSGVDLGTENLQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEYENFVFTNDKKKSIILAFKEKQTS.................................................................................................................................................................................................................................................................................................................................................................. 105
34 -25.5004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  11  23.............................................................................................................................................................................................................................AKVYEDTLLETIMASPLNQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGE-DVYISTVFKILDGLGIDIVSAQTSDTETNG................................................................................................................................................... 110
35 -25.3003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  10  2.........KTDGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSRPTITTIRKVCGTLGISVHDFFDFPPYNE....................................................................................................................................................................................................................................................................................................................................................................................... 75
36 -25.3002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  8  2........SSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL.............................................................................................................................................................................................................................................................................................................................................................................................. 70
37 -25.2001rc6_A mol:protein length:261 Hypothetical protein ylbA  ali model follow..  10  1...........................................................MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIP----GFENCDATILSTPKLGASFVDYLVTLHQNGGNQQG------FGGEGIETFLYVIGNITAKAEG-----KTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYV--------------------------------------------------------------------------------------------PVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYIL-SGQGVYNLDNN----WIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI.......................... 261
38 -25.0002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  13  3.RVPLTAEELERGQRLGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRITPAFFTIAAVARVLDLSLDDVAAVVTFGPVS..................................................................................................................................................................................................................................................................................................................................................................................... 84
39 -24.9003fe5_A mol:protein length:285 3-hydroxyanthranilate 3,4-dioxygenase  ali model follow..  10  48...................................................................................................................................................EEGEEVFYQLGDMLLRVLE-RGKHRDVVIRQGEIFLLPAGVPHSPQRFANT---VGLVIERRRLKTELDGLRYYVGDTTDVLFEKWFYCEDLGTQLAPIIQEFFSS-----EQYRTGKPNPDQLLKEPPFPLSTRSVMEPMCLEAWLDGHRKELQAGTPLS------------------------------------DTYESQVMVHGQGSSEGLRRDVDVWLWQLEGSSVVTMEGQ----RLSLTLDDSLLVPAGTLYGWERGQGSVALSV...................................... 274
40 -24.8001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  11  5.KKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMY................................................................................................................................................................................................................................................................................................................................................................................... 89
41 -24.1003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  7  3ATKTIH---NARYQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKLEAMTPS..................................................................................................................................................................................................................................................................................................................................................................................... 83
42 -23.9002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  12  1.....ENAELEIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNEESEKE..................................................................................................................................................................................................................................................................................................................................................................................... 79
43 -23.7002l49_A mol:protein length:99 C protein  ali model follow..  6  1...........MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTNQIAPE..................................................................................................................................................................................................................................................................................................................................................................................... 73
44 -23.7003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  13  1.........................................................................................................................................................................................................................................SNAMTIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQEDK.................................................................................................................................................... 76
45 -23.7005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  13  2.............................................................................................................................................................................................................................................NLKDSIGLRIKTERERQQMSREVLCLGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYEMKN------------RLIKFPTYRNPDRIKSKLTLIEEVYEKFFDILPEEELLTLDILENILSFTSWEESPKVEEIYED............................................................... 147
46 -23.7001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  12  4.....GSSGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEKG...................................................................................................................................................................................................................................................................................................................................................................................... 81
47 -23.7001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  14  2..............................................................................................................................................................................................................................................NTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLSQTNVA................................................................................................................................................. 75
48 -23.6002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  11  5............................................................................................................................................................................................................................................DHRYRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMD.......................................................................................................................................................... 71
49 -23.5001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  13  3KKKPLTQEQLEDARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMY................................................................................................................................................................................................................................................................................................................................................................................... 88
50 -23.4002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  13  2.................................................................................................................................................................................................................................................ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRIIVN..................................................................................................................................................... 68
51 -23.3003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  11  1...SLTQEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSIARE........................................................................................................................................................................................................................................................................................................................................................................................ 78
52 -23.2002xiu_A mol:protein length:66 CYLR2  ali model follow..  24  2...............IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQWQPE......................................................................................................................................................................................................................................................................................................................................................................................... 66
53 -23.2001utx_A mol:protein length:66 CYLR2  ali model follow..  24  2...............IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE......................................................................................................................................................................................................................................................................................................................................................................................... 66
54 -23.1003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  20  1..........................................................................................................................................................................................................................................SNAMTERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVSTKR...................................................................................................................................................... 73
55 -23.0002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  12  2.......VKDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKLNIDTV.................................................................................................................................................................................................................................................................................................................................................................................... 79
56 -23.0003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  22  4...........................................................................................................................................................................................................................................MSNNQQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKIK...................................................................................................................................................... 75
57 -22.5003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  13  2...............LIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQIILTWNELNEQERKRINF.................................................................................................................................................................................................................................................................................................................................................................... 91
58 -22.4004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  11  2...............LGTRLKAARIRAGYSQKQLGMLVGMDSARMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDELAELILKVSSLTPEFKKELTR.................................................................................................................................................................................................................................................................................................................................................................... 91
59 -22.1005y69_A mol:protein length:151 chain A  ali model follow..  11  2.............SMTIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKPLKYTVSILRSLSMISGLSVSDVLFELEDIEKN..................................................................................................................................................................................................................................................................................................................................................................................... 73
60 -22.1001sq4_A mol:protein length:278 Glyoxylate-induced Protein  ali model follow..  11  27................................................................................TEAYAVIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGFAETFSQYIVELAPNGGSDKPE------QDPNAEAVLFVVGELSLTLQG-----QVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVMPDT-----------------------------------------------------------------------------------------EGRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVL-EGKAVYRLNQD----WVEVEAGDFMWLRAFCPQACYSGGP............................................ 255
61 -22.0003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  10  3MTKTLRTPE---HVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEG.................................................................................................................................................................................................................................................................................................................................................................................................... 68
62 -21.8001sfn_A mol:protein length:246 conserved hypothetical protein  ali model follow..  8  1......................................................................MKHLGQTRSALHGSHAVITPETFVRTALA----EWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQATE--------SVYQRFAFVLGEVDVAVGG-----ETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPYQT---------------------------------------------------------------------------------------------VEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYA-EVHYMEHGLLMLEGEGLYKLEEN----YYPVTAGDIIWMGAHCPQWYGALGR............................................ 229
63 -21.5005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  7  1....MASHERTQPQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPPIYLLLHFYIEGQITDRQLADLRGKIRE...................................................................................................................................................................................................................................................................................................................................................................................... 80
64 -21.5001gqg_A mol:protein length:350 QUERCETIN 2,3-DIOXYGENASE  ali model follow..  8  1.....................................................................DTSSLIVEDAPDHVRPYVIRHYSHARAVTVDTQLYR------YVTGPSSGYAFTLMGTNAPHSDALGVL------PHIHQKHENFYCNGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP-DTEMTGVIVPGGFE-------DLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGTAPANTV---------HTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGDYA---ATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSGSDGLDQNLVNGGEEWSSVSFPAD--W........ 350
65 -21.0001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  11  1............MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGV-TKRPRFLFEIAMALNCDPVWLQYGTKRGKAA..................................................................................................................................................................................................................................................................................................................................................................................... 71
66 -21.0001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  14  1.................................................................................................................................................................................................................................................SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSVDWLLNGTSDSN.................................................................................................................................................... 67
67 -21.0004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  7  16SNAMKHVTAAALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLTEQIDLFIPKQE.......................................................................................................................................................................................................................................................................................................................................................................................... 94
68 -20.7005fd4_A mol:protein length:324 ComR  ali model follow..  20  21..............................................................................................................................................................................................................................................NDKEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPE................................................................................................................................................... 93
69 -20.5002jvl_A mol:protein length:107 TrMBF1  ali model follow..  13  21.RSDDIIKPKTVGKEVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANIGAPRLGPK..................................................................................................................................................................................................................................................................................................................................................................................... 105
70 -20.5002d40_A mol:protein length:354 putative gentisate 1,2-dioxygenase  ali model follow..  10  4.............................SGSMTDNNQNSREQFYQHISGQNLTPLWESLHHLVPKTPNANCAPAYWNYQEIRPLLL--ESGGLIGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPS--------HRHNQSALRFIVGKGAFTAVDGE----RTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDLPLVNILGCGFAEDYPEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYKM-------------------------------------------RYVNPVTGGYPMPSMGAFLQLLPKGFASRV--ARTTDSTIYHVVEGSGQVIIGNE----TFSFSAKDIFVVPTWHGVSFQTTQDSVLFSFSDR................................... 334
71 -20.4002phd_A mol:protein length:368 Gentisate 1,2-dioxygenase  ali model follow..  11  3....................NEKLDHESVTQAMQPKDTPELRALYKSFEEESIIPLWTQLGDLMPIHPKSKAVPHVWKWSTLLR-LARKSGELVPVGRGGERRALGLANPGLGGNAYISPTMWAGIQYLGPRETAPE--------HRHSQNAFRFVVGEGVWTVVNGDP----VRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQPATVAPGHAAIRY-----------------------------------VNPTTGGDVMPTLRCEFHRLRAGTETAT--RNEVGSTVFQVFEGAGAVVMNGE----TTKLEKGDMFVVPSWVPWSLQAETQFDLFRFSDA................................... 351
72 -20.3005a7l_A mol:protein length:80 CI  ali model follow..  20  2...............................................................................................................................................................................................................................................QTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLMGFDVP...................................................................................................................................................... 78
73 -20.1001sq8_A mol:protein length:64 dh434  ali model follow..  14  2.................................................................................................................................................................................................................................................LMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGK-AKRPRFLPELARALGVAVDWLLNGA........................................................................................................................................................ 64
74 -19.9002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  15  1.................................................................................................................................................................................................................................................SISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSVDWLLNGT........................................................................................................................................................ 63
75 -19.9003zhi_A mol:protein length:83 CI  ali model follow..  20  2..............................................................................................................................................................................................................................................LKTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSAYVASVQSPDQNRIYLLAKTLGVSEAWLM........................................................................................................................................................... 74
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205