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Query: 6btm_F mol:protein length:464 Alternative Complex III subunit F, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYTFSSKLKTFSIILMVLGLLGIGYGFLSAPKDIQEVEKILAADAHGAHGTAHGESAEASHKEAGHHEAAEASHEEHKGGEHAKVGAADEHTEHLNHVLHQLQNKPWSALYVACIFFLLLSMGVLAFYAIQQVAQAGWSPVLFRVMQGITAYLPAGSIIFFIILVLCGLHFNHIFVWLGEGVTDPKSPNYDAIIAGKSGYLNFPFWIVRAFIFLLGWNIYRHFSRKNCLAQDEANDDLYYKKNFKISAGFLVFFIVSESIMAWDWIMSFDPHWFSTLFAWYVFASFFVSGITSIALITIYLKSKGYLEYVNTSHIHDLAKFMFGISVFWTYLWFSQFMLIWYANIPEEVTYFVTRIQLYNLPFFGAVVMNFVFPLLILINTDFKRLNWVVVMAGIVILLGHYVDFFNMIMPGTVGDKWFIGVPEIASILFFLGLFIFVVFTALTKSPLLAKRNPFIEESKHFHYLast
1 -163.0006btm_F mol:protein length:464 Alternative Complex III subunit F  ali model  100  1MYTFSSKLKTFSIILMVLGLLGIGYGFLSAPKDIQEVEKILAADAHGAHGTAHGESAEASHKEAGHHEAAEASHEEHKGGEHAKVGAADEHTEHLNHVLHQLQNKPWSALYVACIFFLLLSMGVLAFYAIQQVAQAGWSPVLFRVMQGITAYLPAGSIIFFIILVLCGLHFNHIFVWLGEGVTDPKSPNYDAIIAGKSGYLNFPFWIVRAFIFLLGWNIYRHFSRKNCLAQDEANDDLYYKKNFKISAGFLVFFIVSESIMAWDWIMSFDPHWFSTLFAWYVFASFFVSGITSIALITIYLKSKGYLEYVNTSHIHDLAKFMFGISVFWTYLWFSQFMLIWYANIPEEVTYFVTRIQLYNLPFFGAVVMNFVFPLLILINTDFKRLNWVVVMAGIVILLGHYVDFFNMIMPGTVGDKWFIGVPEIASILFFLGLFIFVVFTALTKSPLLAKRNPFIEESKHFHY 464
2 -111.0006f0k_F mol:protein length:417 ActF  ali model follow..  29  54.................................................................................................GWAIDARQFYFSYLVGWTFCLTLALGSLFFVMIQHLTRAQWVVAVRRLPEALVWTFPVLIVLFIPILFGLH----DLYHWTHHELYDPSSPEYDPILAGKHAYLNVPFFLVRIAFYFFIWTLLAYKLYTLSVRQDVDPDPSIPAQQRKVSAWGMPLYGVTVAFASYDFLMSLDPHWYSTIFGVYFFAGSFFVALGFITTCYAILVRRGTLGIVRAPHFQDLGKLMFGFTAFWAYIAFSQYMLIWYGNLPEETLWYRHRLEHWEVLSQVLIWGHFVLPFLILLPWAAKRTPVLVGTMGIWFAIIHWIDLFWVAMPVLHTEHMTFHWLDVTCWLGLFGVVVGLFFYRISRHSLVPQNDPYLARSLALH. 417
3 -92.0006f0k_C mol:protein length:484 Polysulphide reductase NrfD  ali model follow..  13  46.....WAAFSVAFLGMLTLVAMLAYQVWNG------------------------------------------------------------------GVWGNNIPVGWGWPIVNFVFWVGIGHAGTLISAILFLFRQRWRTSINRAAEAMTIFAVICALIFPTFHVGRVWAIYWTLPIPN---------QMEMWPQFKSPLLWDVFAVSSYFIVSLVFWYVGLGFFALGWCGANRHWRNYEKVYMLLAGLATPLVLSVHSVVSFDFAVSIIPGWHTTIFPPYFVAGAIFSGFAMVVTLMVIARKAGLENVITIDHLEKMNIIMLVTGTMVGFAYITEFFIAWYSGVPYEQYAFINRATGPYAWAYWTMMSCNLIFPQFFWIKKLRRNIPFMFIASIVVNIGMWFERFVITITSLHRDYLPPTWVDVLTLIGSFGLFFTLFLLFLRFVPMVAIAEVKGVLPEADPH 461
4 -87.5006btm_C mol:protein length:466 Alternative Complex III subunit C  ali model follow..  11  44.........TIALVAFLWGLGCIIYTVSTG------------------------------------------------------------------GTWGLNKTVGWAWDITNFVWWVGIGHAGTLISAVLLLFRQRWRMAINRSAEAMTIFSVVQAGLFPIIHMGRPWLAYWVLPIPN---------QFGSLWVNFNSPLLWDVFAISTYLSVSLVFWWTGLLPDFAMLRDAKDWQRFEEVSLVLAGLATPLVLSVHTIVSMDFATSVIPGWHTTIFPPYFVAGAVFSGFAMVNTLLIVMRKVNLEAYITLQHIELMNIIIMITGSIVGVAYITELFVAWYSGVEYEQYAFLNRATGPYWWAYWSMMTCNVFSPQFMWFKKLRTSIMFSFIISIVVNIGMWFERFVIIVTSLHRDYLPPTFVDIGIFIGTIGFFFVLFLLYSRTFPVIAQAEVKTILKGTGDN 453
5 -9.2803cx5_F mol:protein length:146 Cytochrome b-c1 complex subunit 6  ali model follow..  15  1..................GMLELVGEYWEQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE...................................................................................................................................................................................................................................................................................................................................................................................... 72
6 -8.5402mn6_B mol:protein length:100 Sec-independent protein translocase protein TatA  ali model follow..  14  4MGGISQLLIIAVIVVLLFGGSDLGASIKGFKKAMSDDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQVLE.............................................................................................................................................................................................................................................................................................................................................................................................. 94
7 -8.4705jqh_A mol:protein length:471 Endolysin,Beta-2 adrenergic receptor  ali model follow..  10  20MLRIDEGLRL-KIYKDTEGYYTIGIGLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAA-----------------LINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKS---------------------------RWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTW---TFGFWTSIDVLCVTASIETLCVIAVRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINDFFTNQAYAIASSIVSFYVPLVIMVFALKEHKALKTLGIIMGTFTLCWLPFFIVIVHVIQDNLIRKEVYILLNWIGYVNSGF----------PLIYCRSPDFRIAFQ... 460
8 -8.3706e11_d mol:protein length:993 Translocon component PTEX150  ali model follow..  1.......MRIIILALLIVCTI---INYYCAVQNNGNKSLNVMPTCSMPGNDSDSNDNETGDVDNDKNNELGNANDNNEMNNENAESKNMQGENSNNQEQLNENVH....................................................................................................................................................................................................................................................................................................................................................................... 95
9 -8.2606cnb_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7  ali model follow..  105IERYSDKYLKKRKIGISIDDHPYNLNLFPNEAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF..................................................................................................................................................................................................................................................................................................................................................................... 251
10 -8.2106eu0_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7  ali model follow..  105IERYSDKYLKKRKIGISIDDHPYNLNLFPNEAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF..................................................................................................................................................................................................................................................................................................................................................................... 251

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 8 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.