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Query: 6c26_A mol:protein length:718 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSDRSCVLSVFQTILKLVIFVAIFGAAISSRLFAVIKFESIIHEFDPWFNYRATKYLVNNSFYKFLNWFDDRTWYPLGRVTGGTLYPGLMTTSAFIWHALRNWLGLPIDIRNVCVLFAPLFSGVTAWATYEFTKEIKDASAGLLAAGFIAIVPGYISRSVAGSYDNEAIAITLLMVTFMFWIKAQKTGSIMHATCAALFYFYMVSAWGGYVFITNLIPLHVFLLILMGRYSSKLYSAYTTWYAIGTVASMQIPFVGFLPIRSNDHMAALGVFGLIQIVAFGDFVKGQISTAKFKVIMMVSLFLILVLGVVGLSALTYMGLIAPWTGRFYSLWDTNYAKIHIPIIASVSEHQPVSWPAFFFDTHFLIWLFPAGVFLLFLDLKDEHVFVIAYSVLCSYFAGVMVRLMLTLTPVICVSAAVALSKIFDIYLDFKTSDRKYAIKPAALLAKLIVSGSFIFYLYLFVFHSTWVTRTAYSSPSVVLPSQTPDGKLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIAIVGKAMASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDINKFLWMIRISEGIWPEEIKERDFYTAEGEYRVDARASETMRNSLLYKMSYKDFPQLFNGGQATDRVRQQMITPLDVPPLDYFDEVFTSENWMVRIYQLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLRVLast
1 -182.0006c26_A mol:protein length:718 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model  100  1MGSDRSCVLSVFQTILKLVIFVAIFGAAISSRLFAVIKFESIIHEFDPWFNYRATKYLVNNSFYKFLNWFDDRTWYPLGRVTGGTLYPGLMTTSAFIWHALRNWLGLPIDIRNVCVLFAPLFSGVTAWATYEFTKEIKDASAGLLAAGFIAIVPGYISRSVAGSYDNEAIAITLLMVTFMFWIKAQKTGSIMHATCAALFYFYMVSAWGGYVFITNLIPLHVFLLILMGRYSSKLYSAYTTWYAIGTVASMQIPFVGFLPIRSNDHMAALGVFGLIQIVAFGDFVKGQISTAKFKVIMMVSLFLILVLGVVGLSALTYMGLIAPWTGRFYSLWDTNYAKIHIPIIASVSEHQPVSWPAFFFDTHFLIWLFPAGVFLLFLDLKDEHVFVIAYSVLCSYFAGVMVRLMLTLTPVICVSAAVALSKIFDIYLDFKTSDRKYAIKPAALLAKLIVSGSFIFYLYLFVFHSTWVTRTAYSSPSVVLPSQTPDGKLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIAIVGKAMASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDINKFLWMIRISEGIWPEEIKERDFYTAEGEYRVDARASETMRNSLLYKMSYKDFPQLFNGGQATDRVRQQMITPLDVPPLDYFDEVFTSENWMVRIYQLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLRV 718
2 -154.0006ftg_5 mol:protein length:705 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A  ali model follow..  52  5..GFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDRAWYPLGRIIGGTLYPGLMITSAAIYHVL-HFFHITIDIRNVCVFLAPLFSSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPGYISRSVAGSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWAAKCALAYFYMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTVYCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALLMLTGKISPWTGRFYSLLDPSYAKNNIPIIASVSEHQPTTWSSYYFDLQLLVFMFPVGLYYCFSNLSDARIFIIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLSTYMKNLDISRPDKKSKKQQDSTSGMILVMAFFLITYTFHSTWVTSEAYSSPSIVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAKVMSWWDYGYQITAMANRTILVDNNTWNNTHISRVGQAMASTEEKAYEIMRELDVSYVLVIFGGLTGYSSDDINKFLWMVRIGGSTDTGHIKEHDYYTPTGEFRVDREGSPVLLNCLMYKMCYYRFGQVYTEAKRPPGFDRVRNAGNKDFELDVLEEAYTTEHWLVRIYKVKDLDNRGLSRT......................... 705
3 -110.0003waj_A mol:protein length:875 Transmembrane oligosaccharyl transferase  ali model follow..  15  2.....QNAESWFKKYWHLSVLVIAALISVKLRILNVFTWTVRLGGNDPWYYYRLIENTIHNF--PHRIWFDPFTYYPYGSYTHFGPFLVYLGSIAGIIF----SATSGESLRAVLAFIPAIGGVLAILPVYLLTREVFDKRAAVIAAFLIAIVPGFLQRSILGFNDHHIWEAFWQVSALGTFLLAYNRWKGHYPVIAGITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFVNADRLSLVAVVTFAVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGRKGMPLAVIVLTALIMGLFFVISPDFARNLLSVVVVQPKGGALTIAEVYPFAVLHFGALFFFGMAGILYSAYRFLKRRSFPEMALLIWAIAMFIALWGQNRFAYYFAAVSAVYSALALSVVFDKLHLYRALENAIGARNKLSYFRVAFALLIALAAIY---------------PTYILADAQSSYAGGPNKQWYDALTWMRENTPETYGVISWWDYGHWIEAVAHRMPIANPFQAGIGNKYASSFFTAENESYAEFVAEKLNVKYVVSDIEMETGKYYAMAKYYGGYFYYSPTGTFGYANSQWDIPLNSIIIPLRIPSELYYSTMEAKLHLFDGSGLSHYRMIYESDYPATMGTQEVLYKYAYTQLYEKKMGYVKIFERVKGAVVTGKVSANVTVSVNATIKTNQNRTKNGTYTV 822
4 -85.2003rce_A mol:protein length:724 Oligosaccharide transferase to N-glycosylate proteins  ali model follow..  12  1ME--QQNFTDNNSIKYTCILILIAFAFSVLCRLYWVANDQLMITTNDGYAFAEGARDMIA------------------GFHQPNDLSYFGSSLSTLTYWLYSI---LPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALSMLAWQYK--------------------LALIVLLFAIFAFKEEKINFYMIWALIFISISILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILSFFILLCKDHKSMLLALPMLALGFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFL------------EKKQIKLSLRNKNILLILIAFFSISPALMHIYYYKSS------------TVFTSYEASILNDLKNKAQREDYVVAWWDYGYPIRYYSDVKTLIDGGKHLGKDNFFSSFVLSKEQIPAANMARLSVEYYIYMPYRML--------RIMPVVAQFANTNPDNGEQEKSLFFSQANAIAQDKTTGSVSKAQIYLLFLREYKSFVILDESLYNSAYIQMFLLNQYDQDLFEQVTNDTR--AKIYRLKRE................................. 713
5 -84.0005ogl_A mol:protein length:713 Undecaprenyl-diphosphooligosaccharide--protein glycotransferase  ali model follow..  12  1ME--QQNFTDNNSIKYTAILILIAFAFSVLARLY-FFNDQLMITTNDGYAFAEGARDMIA------------------GFHQPNDLSYFGSSLSTLTYWLYSI---LPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPVFIMIYLWWYPSSSLNFAMIGLFGLYTLVFHRKEKIFYLTIALMIIALSMLAW--------------------QYKLALIVLLFAIFAFKEEKINFYMIWALIFISILILHLSGGLDPVLYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILSFFILLLKDHKSMLLALPMLALGFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFL------------EKKQIKLSLRNKNILLILIAFFSISPALMHIYYYKSS------------TVFTSYEASILNDLKNKAQREDYVVAWWDYGYPIRYYSDVKTLIDGGKHLGKDNFFSSFVLSKEQIPAANMARLSVEYYIYMPYRML--------RIMPVVAQFANTNPDNGEQEKSLFFSQANPLDQDKKQGSISKAQIYLLYLREYKSYVILDESLYNSSYIQMFLLNQYDQDLFEQITNDTR--AKIYRLKRE................................. 713
6 -75.8002lgz_A mol:protein length:273 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3  ali model follow..  95  1...................................................................................................................................................................................................................................................................................................................................................................................................................................................................MGSSSSGLVPRGSHSTWVTRTAYSSPSVVLPSQTPDGKLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIGGMADRTTLVDNNTWNNTHIAIVGKANASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDINKFLWNIRISEGIWPEEIKERDFYTAEGEYRVDARASETMRNSLLYKMSYKDFPQLFNGGQATDRVRQQMITPLDVPPLDYFDEVFTSENWNVRIYQLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLRV 267
7 -53.5003vu0_A mol:protein length:162 Putative uncharacterized protein  ali model follow..  22  2..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EMTMDWKEALNWMKENLEADYAVLSWWDYGNWILYVAKKAVVCNNFQAGADDAAKF--FTAQSEEEAMKIVEKRKVRYVVTVEELTV-KPETNKTKFIPIMQIAGYS--------------PEYMKNKEIIDFFNKTMLYKLHVENA-----------------------TNLTHFRLLKNFGT--VKIFEVK................................... 162
8 -53.0003vgp_A mol:protein length:164 Transmembrane oligosaccharyl transferase, putative  ali model follow..  21  2.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PDLTEDWKEALEWMRTSLEEQNSVMSWWDYGNWILYVSKKAVVANNFQAGAVDAAKF--FTAKSEDEAIKIAKKRGVRYVVTADEIT--MKDANNTKFPAIMRIAGYNVDLM--------------TEGEILNFFNHTVLYRLHMENAE-----------------------NLTHFRLVKEFGD--VKIFEVV................................... 162
9 -37.0003wai_A mol:protein length:739 Maltose-binding periplasmic protein, Transmembrane oligosaccharyl transferase  ali model follow..  14  359................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QTVDEALKDAQTNKQWYDALTWMRENTPDGYGVISWWDYGHWIEAVAHRMPIANPFQAGNNVPGASSFFTAENESYAEFVAEKLNVKYVVSDIEMET-------GKYYAMAVWAEGDLPGYANSQWDIPLNSIIIPLRIPSELYYSTMEAKLHLFDGSGLSHYRMIYESDYPAEWGTQEVLYKYAYTQLYEKKMGYVKIFERVKGAVVTGKVSANVTVSVNATIKTNQNRT....... 677
10 -36.5002zag_A mol:protein length:497 Oligosaccharyl transferase stt3 subunit related protein  ali model follow..  16  1...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GPLLAQSAKSMRTTEIETSGWEDALKWLRENTPEYSTATSWWDYGYWISLLGQRRASADGGHARDRDHI-LALFLARDGNISEVDFESWELNYFLVYLN--------DWAKFNAISYLGGAITRREYNGDESGRGAVTTLLPLPRYGEKYVNLYAKVIVDVSNSSVKVTVGDRECDPLMVPGFSDKLFSNFEPVYESGN--VIVYRFTPFGIYKIEENINGTWKQVYNLTPGKHEL....... 283
11 -34.5003aag_A mol:protein length:291 General glycosylation pathway protein  ali model follow..  15  2..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PLGSKAPTVFSQNEASLLNQLKNIANREDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEYYLYMPARMSLIFNGVVLSDDFRSFKIGDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSAYVQMFFLGNYDKNLFDLVINSRD--AKVFKLK................................... 290
12 -32.9003wov_A mol:protein length:512 Oligosaccharyl transferase  ali model follow..  12  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VIARNAKALKVSEIETTGWEQVLKWLNENTSKYATATSWWDYGYWISLLGHRRASADGGHAR-DRDHILALFLARDGNVSEVDFESWELNYFIIYLN--------DWAKFNAISYLGGAITRREYNGDETGRGQVTTILPLQGSGGIYVNPYFGLITYYKVATSNFIKLAFNIPISKYSGFTEKLYSNFVPVYGYGN--VIVYEFRPFAIYRIEELINGTWKAVNSLTPGKHELK...... 288
13 -31.6003vu1_A mol:protein length:506 Putative uncharacterized protein PH0242  ali model follow..  13  2....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ALKNTEIEVTGWEQALKWLRSNTSKYATATSWWDYGYWIELLGNRRASADGGHARDRD-HILALFLARDGNISEVDFESWELNYFIIYLN--------DWAKFNAISYLGGAITRKEYNGDENGRGRVTTILLTQAAGNVYVNPYARIVIKVIQQNKTRRKLAFGIPTSSYSEFAEKLFSNFIPVYQYGS--VIVYEFRPFAIYKIEDFINGTWREVGKLSPGKHTLR...... 280
14 -20.6005ezm_A mol:protein length:578 4-amino-4-deoxy-L-arabinose transferase or related glycosyltransferases of PMT family  ali model follow..  9  18.SQSTQGAVGWSAATGWVVLFVAVALVVWFVSL-----DMRHLVGPDEGRYAEISREMFASGRYNALKYFEK----P----------PFHMWVTVVGYELFGLG-------EWQARLAVALSGLLGIGVSMMAARRWFGARAAAFTGLALLAAPMWSVAAHFNTLD--MTLAGVMSCVLAFMLMGQHAARRGWMVACWAAMGVAILTKG----VGIALPGLVLVVYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRNPEFPN--------------------------------------------------------------------FFFIHEHWQRYTSNIHSRSGSVFYFLPLVIGGFLPWAGIFPKQARFRPALMAGIWAIAIVFFSISRSKLPGYIVPALGILAGVALDRLSPTLNANHIPNSFYRAYAVWVAVAFVVMLLGIAVARLLLRRGVLPSVAVYAMGMYLGFTVALLGHETVGRP-ADIAPQIAQKLTPEMPLYGVQMLDHTLPFYLRHPLMVGQADELTFGATVEPQRVVPDVDSFTKLWKNGQPAMAVM................................................................................................................................................... 542
15 -9.0202c26_A mol:protein length:260 ENDOGLUCANASE  ali model follow..  17  2....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ASVPENQAPKAIFTFSPEDPVTDENVVFNAS-----NSIDEDGTIAYYWDFGDGYEGTSTTPTITYKYKNPGT--YKVKLIVTDNQGASSSFTATIKVT....................................................................................................................................................... 94
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.