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Query: 6c8v_A mol:protein length:394 Coenzyme PQQ synthesis protein E, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMDVIPAPVGLLAELTHRCPLRCPYCSNPLELDRRSAELDTQTWLRVLTEAAGLGVLHVHLSGGEPTARPDIVEITAKCAELGLYSNLITSGVGGALAKLDALYDVGLDHVQLSVQGVDAANAEKIGGLKNAQPQKMQFAARVTELGLPLTLNSVIHRGNIHEVPGFIDLAVKLGAKRLEVAHTQYYGWAYVNRAALMPDKSQVDESIRIVEAARERLKGQLVIDLVVPDYYAKYPKACAGGWGRKLMNVTPQGKVLPCHAAETIPGLEFWYVTDHALGEIWTKSPAFAAYRGTSWMKEPCRSCDRREKDWGGCRCQALALTGDAANTDPACSLSPLHAKMRDLAKEEAAETPPDYIYRSIGTNVQNPLSEKAPLLast
1 -104.0006c8v_A mol:protein length:394 Coenzyme PQQ synthesis protein E  ali model  100  1MGSSSSGLVPRGSHMDVIPAPVGLLAELTHRCPLRCPYCSNPLELDRRSAELDTQTWLRVLTEAAGLGVLHVHLSGGEPTARPDIVEITAKCAELGLYSNLITSGVGGALAKLDALYDVGLDHVQLSVQGVDAANAEKIGGLKNAQPQKMQFAARVTELGLPLTLNSVIHRGNIHEVPGFIDLAVKLGAKRLEVAHTQYYGWAYVNRAALMPDKSQVDESIRIVEAARERLKGQLVIDLVVPDYYAKYPKACAGGWGRKLMNVTPQGKVLPCHAAETIPGLEFWYVTDHALGEIWTKSPAFAAYRGTSWMKEPCRSCDRREKDWGGCRCQALALTGDAANTDPACSLSPLHAKMRDLAKEEAAETPPDYIYRSIGTNVQNPLSEKAPL 388
2 -81.0005v1q_A mol:protein length:459 Radical SAM  ali model follow..  18  102..QNARKHVAKLKKHNILSFPLELVIYPSMYCDLKCGFCFLAN--REDRNAKPAKDWERILRQAKDNGVLSVSILGGEPTRYFDIDNLLIACEELKIKTTITTNAQLIKKSTVEILAKSKYITPVLSLQTLDSKLNFELMG--VRPDRQIKLAKYFNEVGKKCRINAVYTKQSYEQIIELVDFCIENKIDRFSVANYSEVTGYTKIKKKY--DLADLRRLNEYVTDYITQREANLNFATEGCHLFTAYPELIGCRAKYTKMEIMSNGDILPCIAFLGV-NQTKQNAFEKDLLDVWYDDPLYGGIRSFRTKNSKCLSCGLLKICEGGCYVNLIKEKSPEYFRDSVCQL......................................... 453
3 -51.2004k36_A mol:protein length:392 Anaerobic sulfatase-maturating enzyme  ali model follow..  13  1.................MPPLSLLIKPASSGCNLKCTYCFSDNRNVKSYGIMRDEVLESMVKRVLNEANGHCSFAGGEPTLALEFFEKLMELQRKKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDG-PKEIHNLNRCGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFGNRVSIRYFDGLLETILLGKSSSCGMNGTCTCQFVVESDGSVYPCDFY-VLDKWRLGNIQDMTMKELFETNKNHEFIKLSFKVHEECKKCKWFRLCKGGCRRCRDSKEDSALELNYYCQFEYAFPRLINVANNIKSDPNSSSVDKLAAA............ 384
4 -50.3005wgg_A mol:protein length:453 Radical SAM domain protein  ali model follow..  15  78..FSEDPYKEYVSSMDRKSVVKALCLHISHDCNLRCKYCFASTGNGGQRNMMSLEVGKKAIDESGNRKNLEIDFFGGEPMMNFDVVKIIEYARQKNFRFTLTTNGLLLNDENIKYINENMQN-IVLSIDG-RKEVNDRMRDGSGCYDDILPKFKYVAESQDNYYVRGTFTRENMDFSNDVLHLA-DEGFRQISVEPVVAAKDSGYREEDLPRLFEEYEKLAYEYVKRRKEGNNFFHFMIDLTQGPCIVKRLTGCGSGHEYLAVTPEGDIYPCHQFVGNEKFKMGNVKEGV-----LNRDIQNYFKNSNVYTKECDSCWAKFYCSGGCAANSYNFHKDINTVYKGCELEKKRVE................................... 443
5 -44.3006b4c_A mol:protein length:298 Viperin  ali model follow..  15  1...........GGRVRTGQVPVSVNYHFSRKCNKECLFCFHTAT---TSHVEKPENAKRGLTLLKQAGMKKINFAGGEPFLYPKLGEMIDFCKETLESVSIVTNGSLVKEQFLQKHGR-NIDILAVSCDSFNEATNIKIRGSGDNVQKLYEIGSWCQKYDIKFKLNTVVNKFNHEDMNDHLNALQPFRWKCFQVLIVTGENKTLRNAHSLTISDDEFDRFCERHSSQTCLVPEPNR------------------LMAKSYLILDEYMRFLDRNGQQPSKSILEVGVQQALQAVFWDEEAFVERGGIYDWNKSSCSS........................................................................ 291
6 -44.1005vsl_A mol:protein length:318 Radical S-adenosyl methionine domain-containing protein 2  ali model follow..  16  27..................TTPVSVNYHFTRQCNYKCGFCFHT---AKTSFVLPLEEAKRGLLLLKQAGLEKINFSGGEPFLQDRLGKLVRFCKEELASVSIVSNGSLIRERWFKDYGE-YLDILAISCDSFDEQVNALIGGKKNHVENLQKLRRWCRDYKVAFKINSVINRFNVDE--DMNEHIKALSPVRWKVFQCLLIEDALREAERFLISNEEFETFLERHKEVSCLVPES------------------NQKMKDSYLILDEYMRFLNCTGGRKDPS---KSILDVGVEEAIKF........................................................................................... 292
7 -40.7004m7t_A mol:protein length:270 BtrN  ali model follow..  19  1MGSSSSGLVPRGSHMD--KLFSMIEVEVNSQCNRTCWYCPNSVSKRKETGEMDPALYKTLMEQLSSLDAGRISFHFGEPLLCKNLDLFVGMTTEYIARPIIYTNGDFLTEKRLQTLTELGIQKFIVTQHAGAKHKFRGVYDQLAGADKEKVVYLDHSDLVLSNRGGILDNIPQASK-------------------------------------------------------------------------ANMSCMVPSNLAVVTVLGNVLPC-FEDFNQKMVMGNIGEQHISDIW-HNDKFTSFRKMLKEGHRCKNCNN..................................................................... 251
8 -40.6004m7s_A mol:protein length:269 BtrN  ali model follow..  14  3..................KLFSMIEVEVNSQCNRTCWYCPNSVSKRKETGEMDPALYKTLMEQLSSLDAGRISFHFGEPLLCKNLDLFVGMTTEYIARPIIYTNGDFLTEKRLQTLTELGIQKFIVTQHAGAKHKFRGVYDQLAGADKEKVVYLDHSDLVLSNRGGILDNIPQASK-------------------------------------------------------------------------ANMSCMVPSNLAVVTVLGNVLPC-FEDFNQKMVMGNIGEQHISDIW-HNDKFTSFRKMLKEGHRCKNCNN..................................................................... 237
9 -38.5006djt_A mol:protein length:331 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase  ali model follow..  13  65....................RCIQCTPSVIWCQQNCIFCWRVLPRDIGIDEPKWEEPEVVYEKILAMHKRIAISLSGEPTLYPYLDELIKIFHKNGFTTFVVSNGILT-----DVIEKIEPTQLYISLDAYDLDSYRRICGKKEYWESILNTLDILKEKKRTCIRTTLIRGYN-DDILKFVELYERADVHFIELKSYMHVGYSQKRKKEDMLQHDEILKLAKMLDENSS............................................................................................................................................................... 299
10 -38.5002yx0_A mol:protein length:342 radical sam enzyme  ali model follow..  12  68..................SHRCLQMTPVLAWCTHNCIFCWRPMENFLGTEPQPWDDPAFIVEESIKAQRKLAISLSGEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIIPDGWERILRFLELMRDLPTRTVVRTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINMPSHQDIREFAEALVKHLPGYH............................................................................................................................................................ 310
11 -35.5001tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A  ali model follow..  16  16.......................LRLSVTDRCNFRCDYCMDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQID-DIGLTTNGLLL-KKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHLITSVSQSFCST--TRARLSSDGKFYGC---------LFATVDGFNVKAFIRSGVTDEELKE.................................................................................. 303
12 -26.3005tgs_A mol:protein length:263 7-carboxy-7-deazaguanine synthase  ali model follow..  11  45............................TAGCDYSCSWCDSDGSAKKDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDAFIELLKENNIRAALETQGTVYQDWF--------IDDLTISPKPPSS-------KMVTNFQKLDHILTSLQENDRQHAVSLKVVIFNDEDLEFAKTVHKRYPGIPFYLQVGNDDVHTTDDQSLIAHLLGKYEALVDKVAVDAELNLVRVL........................................................................................................................................................ 243
13 -21.1003c8f_A mol:protein length:245 Pyruvate formate-lyase 1-activating enzyme  ali model follow..  16  1...SVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNDTWDTHGGKEVTVEDLMKEVVTFMNASGGGVTASGGEAILQAEFVDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSN--HRTLEFAKYLANKNVKVWIRYVVWSDDDDSAHRLGEFTRDMGVEKIELLPYHELGKHKKLDGVKPPKKETMERVKGILEQY................................................................................................................................................................. 239
14 -19.7004njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  15  42............................FAGCNLWSGREFVGTDGENGGKFKDADALVATIAGLWPAAHRFVVCTGGEPMLQLDQ-PLVDALHAAGFGIAIETNGSLPVLES--------IDWICVSPKADAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRDLNTKLAIDWCK.......................................................................................................................................................................................................... 206
15 -19.6003t7v_A mol:protein length:350 methylornithine synthase PylB  ali model follow..  10  40LERLYSAARKVRDHYFGNRVFLNCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEPYYYEDPNRFVELVQKEELGLPIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLR-VGQSFDGRVNARRFAKQQGYCVEDGILTVGNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGF----RDKSNLSELKIISVLRLMFPKRLIPASLDLEGIDGMVLRLNAGANIVTSILPPDSQLEGVANYDRDLEERDRDI--KSVVRRLEIMGMKPARQADFEAVLGC.......................................................................... 350
16 -19.2005fep_A mol:protein length:358 [FeFe] hydrogenase maturase subunit HydE  ali model follow..  11  63.....................IRAIIEFSNVCRKNCLYCLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGE-XMPDVISDIVKEIKKMGVAVTLSLG--EWPREYYEKWKEAGADRYLLRHETANPVLHRKLR--DTSFENRLNCLLTLKELGYETGAGSMLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPH-PDTPLANEKKGDFTLTLKMVALTR................................................................................................................................................................... 267
17 -19.2004jy8_A mol:protein length:358 FEFE-HYDROGENASE MATURASE  ali model follow..  11  63.....................IRAIIEFSNVCRKNCLYCLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEYYMPDVISDIVKEIKKMGVAVTLSLG--EWPREYYEKWKEAGADRYLLRHETANPVLHRKLR--DTSFENRLNCLLTLKELGYETGAGSMLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPH-PDTPLANEKKGDFTLTLKMVALTR................................................................................................................................................................... 267
18 -17.7004wcx_A mol:protein length:480 Biotin and thiamin synthesis associated  ali model follow..  10  67LNEMFKVARYIKEEIYGNRIVIFAPLYVSNYCVNNCRYCGYRHSNEQQRKKLTMEEVRREVEILEEMGHKRLAVEAGEDYIVDVIKTIYDTKLKNGSIRRVNVNIAATTVENYKKLKKVGIGTYVLFQETYHRPTYEYMHGPKHDYDYHLTAMDRAMEAGIDDVGLGVLKYETVAMLYHANHLEEKFGVHTISVPRLRPALNISIDKFPYIVSDKDFKKLVAVIRMAVPYTGMILSTR------EKPKFREEVISIGISQISAGSCGGYHEEISKKGGSKPQFEVEDKRSPNEI-YCTACYRMGRTGDRFMSFAKSGQIHNFCLPNAILTFKEFLIDYGDEK-------TKKIGEKAIAVNLEKIPSRTVREETKRRLTRIENGERDL 472
19 -17.7004rtb_A mol:protein length:477 HydG protein  ali model follow..  9  92.....................LFAPLYLSNICINNCSYCFRRENKELSRVRLSLEEAVDEAKAIREMGHTRILLVMGE----SYLEEIIPAIYSEVDIRRINVNIAPLTLKGYERLKKLKIGTYQLFQESYNPEVYREVHGPKTNFLWRLNAVERAIEAGIDDIGIGALLFELLGVIAHADYLKKKFGPHTVSVPRLKPA-LNSVFSNDYKISDHKFKKIVALLRIMLPYTGIILSTREPQHLRDELVELGVSQMSAASRTGP---GEYRGKKGEEERQQFLLSDLIDKGFLPSFCTA-CYRKRRTGKTFMGLADRGQIKDFCTPDALFSFVEYLYEIRDKHPELYKKGNGYLLQVVKDLPNFENIGRAIEYILKGEKD......... 468
20 -16.6002a5h_A mol:protein length:416 L-lysine 2,3-aminomutase  ali model follow..  13  112..................RYPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRN-QVRDVLLSGGDALLVSDLEYIIAKLREIP-IVRIGSRTPVITPELVNMLKKYHPVWLNTHFNHPNEIT-----------EESTRACQLLADAGVPLGNQSVLLRDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTS................................................................................................................................................................... 320
21 -15.6001olt_A mol:protein length:457 OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE  ali model follow..  15  50..................ERPLSLYVHIPF-CHKLCYFCGCNKIVTRQQHKADEQEIVHRAPLFAGRHVSQLHWGGGTPLNKAQISRLMKLLRENDAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLV-NREQDEEFIFALLNHAREIGTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKILPSPQQKLDILQETIAFLTQSG............................................................................................................................................................ 281
22 -15.5003can_A mol:protein length:182 Pyruvate-formate lyase-activating enzyme  ali model follow..  14  7.......................................................................VTFCGGEPLLHPEFLDILKRCGQQGIHRAVDTTLLARKETVDEVMRNCEL--LLIDLKSMDSTVHQTFCDVPN--ELILKNIRRVAEADFPYYIRIPLVNADEKNIKLSAEFLASLPPEIINLLPYHDIGKGKKGYKMQTPSEEVQQQCIQILTDY................................................................................................................................................................. 174
23 -15.3001r30_A mol:protein length:369 Biotin synthase  ali model follow..  11  62.......................LLSIKTGACPEDCKYCPQSSRYKTGLEAMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLD-TSPEFYGNIITTR-TYQERLDTLEKVRDAGIKVCSGGIV-ETVKDRAGLLLQLANPTPPESVPINMLVKVKGTPLADN----DDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCK.......................................................................................................................... 306
24 -14.8005exi_A mol:protein length:331 Lipoyl synthase  ali model follow..  13  86......................ATFLIGGDQCTRRCDFCQIDTG---KPAELDRDEPRRVADSVRTMGLRYATVTGGAWLYAATVRAIKELNPSTGVELLIPDF--NGEPTRLAEVFESGPEVLAHNVE-TVPRIFKRIR-PAFTYRRSLGVLTAARDAGLVTKSNLILLGETSDEVRTALGDLRDAGCDIVTITQYLRSARHHPVERWVKPEEFVQFARFAE..................................................................................................................................................................... 290
25 -14.1004u0o_B mol:protein length:296 Lipoyl synthase 2  ali model follow..  13  54......................ATFLLLGPTCTRACAFCQVEKG--HAPAAVDPEEPTKIAAAVATLGLRYVVLTSVARDDLPDFVATMAAIRQRCPGTEIEVRGRLSQRDCIAQIVAAQPACYNHNLETVRRLQGPVRR--GATYESSLRVLATVKELNPDIPTKSGLM-ETEAEIIETLKDLRRVGCDRLTLGQYLPSLSHLPVVKYWTPEEFNTLGNIAR..................................................................................................................................................................... 267
26 -13.9004r33_A mol:protein length:420 NosL  ali model follow..  12  99.....................TFVPLYTTNYCDSECKMCMRKGNHRLDRKFSGRKEITEQLEILHHEGVRGVGFLTGEYEDKHTIGWAIRTALDLG--ERVYFNIGSMEQDEIDVLGEEDPVTMCVFQESYDRETYRRFGVPKADFDRRVVSFDRWLDAGYRVGLHDDLSAELVSLVAHGDHLRSRGATADLSVPRMRPAMKSRDTTRVGDDDYLRLMSVVAFT.................................................................................................................................................................... 326
27 -13.5006fd2_B mol:protein length:457 Putative apramycin biosynthetic oxidoreductase 4  ali model follow..  15  197......................ITSINGSFGCPYPCRFYCPYPLSEGRKIRTPVERIVAEFRQCAELGITAAVFRDPVSFHRDRTLELCQALKAADTGVWCETRIDRLDEEVVAALVDAGCVGVEVGVESGDPDMQATAVRKRLNLDTVRKFHAVARKAGLKLVFLFLI-RETRMSIRRTFDFILELGLADTEFNLSVIT............................................................................................................................................................................................ 380
28 -13.5005l7j_A mol:protein length:459 ELP3 family  ali model follow..  12  13.....................PVAVMTKPLPCPGKCIYCPTFAATPQSYTPESPAVLRAKSCEYQPTDKVELIIMGGTFLSADYQYGFIKDCYDA-VGLCIETRPDICGKAEIQRMIDFGTTRVELGVQMLDDDIYKLV-ERGHRVSDVAEATCLLREYGLKVHYHWMPDLALSRMVFEDPRFCPDLKLYPTMVVEGTILEQWWKEGRYTPYPNGTMTGLIADIKALVPP.............................................................................................................................................................. 271
29 -13.0005l7l_A mol:protein length:446 ELP3 family, ELP3 family  ali model follow..  12  13.....................PVAVMTKPLPCPGKCIYCPTFAATPQSYTPESPAVLRAKSCEYQPTDKVELIIMGGTFLSADYQYGFIKDCYDA-VGLCIETRPDICGKAEIQRMIDFGTTRVELGVQMLDDDIYKLV-ERGHRVSDVAEATCLLREYGLKVHYHWMPDLALSRMVFEDPRFCPDLKLYPTMVVEGTILEQWWKEGRYTPYPNGTMTGLIADIKALVPP.............................................................................................................................................................. 271
30 -12.1004fhc_A mol:protein length:368 Spore photoproduct lyase  ali model follow..  8  104........................AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQINERAPEITRFEAADIVGIDHLTHSLKKAIEFYGRLRFVTKYEHVDH-----LDARHNGKTRFRFSINSRYVINHFEPGTSSFDGRLAAARKVAGAGYKLGFVVIYRHEGWERFQELARQLEGMDLSDLTFELI............................................................................................................................................................................................... 291
31 -11.1002ftp_A mol:protein length:302 hydroxymethylglutaryl-CoA lyase  ali model follow..  10  2..........................HMNLPKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGS-SPKWVPQMAGSAEVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEVAVFAAASEAFSQRNINSIKDSLERFVPVLEAARQHQVRVRGYISCVDVDPRQVAWVARELQQMGCYEVSLGDTIGVG-----------TAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGG---CPYAKG----ATGNVASEDVLYLLNG........................................................................................... 263
32 -11.0001ydo_A mol:protein length:307 HMG-CoA Lyase  ali model follow..  9  1...........................MPYPKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITS-HPKWIPALRDAIDVAKGIDREKGVTYAALVPNQRGLENALEGGINEACVFMSASETHNRKNINSTSESLHILKQVNNDAQKANLTTRAYLSTVDVPIEQVIRLSEALFEFGISELSLGDTIGAA-----------NPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGG---CPYAP-----SSGNAATEDIVYMLEQ........................................................................................... 261
33 -11.0005ul2_A mol:protein length:744 OxsB protein  ali model follow..  14  282............NFKEEVPTPSALTLETSRGCDYRCTFCPRDHKLRSLSVEQTLKQLDDILRAGKHFNIKPHIYMADEEFIAQRIIDICEGLLKREEKIKFDFAANVERLKMWHYCALAGADRIFIGVESGSNQQLKRYGK---TSEQNIIALRLVSALGINLRIGFIMFMKGLDNLKENLDFLERTDALMKPIDIGDMTY........................................................................................................................................................................................... 510
34 -10.9001ydn_A mol:protein length:295 HYDROXYMETHYLGLUTARYL-COA LYASE  ali model follow..  10  4................................HVEIVEMAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATS-SPKWVPQLADSREVMAGIRRADGVRYSVLVPNMKGYEAAAAAHADEIAVFISASEGFSKANINTIAESIERLSPVIGAAINDGLAIRGYVSCVPVTPQAVASVTEQLFSLGCHEVSLGDTIGRG-----------TPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGGLGG---CPFAP-----AKGNVDTVAVVEMLHEMGFETGLDLDRLRS............................................................................. 273
35 -10.8002cw6_A mol:protein length:298 Hydroxymethylglutaryl-CoA lyase, mitochondrial  ali model follow..  9  5................................RVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTS-SPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINSIEESFQRFDAILKAAQSANISVRGYVSCAKISPAKVAEVTKKFYSMGCYEISLGDTIGVG-----------TPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGG---CPYAQG----ASGNLATEDLVYMLEG........................................................................................... 260
36 -9.7203rf9_A mol:protein length:404 Ribosomal RNA large subunit methyltransferase N  ali model follow..  21  116......................TLCVSSQVGCALECKFCST--AQQGFNRNLRVSEIIGQVWRAAKIPITNVVMMGGEPLLNLNAMEIMLDDFGFGLRVTLSTSGVV---PALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQL......................................................................................................................................................................................................... 295
37 -9.2503ivs_A mol:protein length:423 Homocitrate synthase, mitochondrial  ali model follow..  17  42........................IIESTLR------------GEQFANAFFDTEKKIQIAKALDNFGVDYIEL--TSPVASEQSRQDCEAICKLGLKCKILTHIRCHMDD-ARVAVETGVDGVDVVIGTSQYLRKYSHGDMTYIIDSATEVINFVKSKGIEVRFSSESFRSDLVDLLSLYKAVDKIGVNRVGIADTV------------CATPRQVYDLIRTL---RGVVSCDIECHFHNDTGMAIANAYCALEAGATHIDTSILG------------GERNGIT---PLGAL.............................................................................................. 271
38 -9.2403ewb_X mol:protein length:293 2-isopropylmalate synthase  ali model follow..  11  1.................MSLKKIQFFDTTLR------------GEQTPGVNFDVKEKIQIALQLEKLGIDVI--EAGFPISSPGDFECVKAIAKAIKHCSVTGLARCVEGDIEEALKDAVSPQIHIFLATSDVHMEYKLKSRAEVLASIKHHISYARQKFDVVQFSPEATRSDRAFLIEAVQTAIDAGATVINIPDTV------------YTNPTEFGQLFQDLRRIKQFDDIIFASHCHDDLGMATANALAAIENGARRVEGTING------------GERAGNT---ALEEV.............................................................................................. 245
39 -9.1703eeg_A mol:protein length:325 2-isopropylmalate synthase  ali model follow..  12  1...........................MSLGKRIFVFDTTLRDGEQVPGCQLNTEEKIIVAKALDELGVDVI--EAGFPVSSPGDFNSVVEITKAVTRPTICALTRAKEADIGEALRFAKRSRIHTGIGSSDIHIEHKLRTRENILEMAVAAVKQAKKVVHEVEFFCEAGRADQAFLARMVEAVIEAGADVVNIPDTT------------YMLPWQYGERIKYLMDNVSNIDKILSAHCHNDLGLATANSLAALQNGARQVECTING------------GERAGNT---ALEEV.............................................................................................. 246
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.