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Query: 6cnb_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFXXXXXXXXXXXXXXXXXXXRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAFLast
1 -108.0006cnb_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7  ali model  108  1MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFXXXXXXXXXXXXXXXXXXXRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF 251
2 -103.0006eu0_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7  ali model follow..  100  1MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF 251
3 -32.9005fja_Q mol:protein length:88 DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC7  ali model follow..  126  1MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPXXXXXXXXXXXXXXXXXXX................................................................................................................................................................... 88
4 -10.7005oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  6  394..........................................................................................................KFTARNKYATXXXXXXXXXXXXLTIDEAEKRMDKKSGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFG.. 536
5 -10.6005fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  7  389........................................................................................................ADKV--KFTARNK----------------DEAEKRMDKKSGEVPRMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFG.. 524
6 -10.2003wa0_G mol:protein length:96 Protein VPRBP  ali model follow..  18  7.......................................................................................................................................................................................DDDTDDLDELDTDQLLEAELEEDDNNENAGEDGDNDFSPSDEELANLLEEGEDGEDEDSDADEE.... 70
7 -10.0004v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  7  384........................................................................................................ADKV--KFTARNK----------------DEAEKRMDKKSGEVPRMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFG.. 519
8 -10.0005chl_A mol:protein length:74 Vacuolar protein sorting-associated protein 72 homolog  ali model follow..  8  19................................................................................................................................................................................................NEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPE... 74
9 -9.9504ui9_D mol:protein length:121 ANAPHASE-PROMOTING COMPLEX SUBUNIT 15  ali model follow..  18  59............................................................................................................................................................................................SEHYDDEEEEDDEDDEDSEEDSEDDEDMQDMDEMNDYNESP--DDGEVNEVDMEGNEQDQDQW 119
10 -9.8305oql_X mol:protein length:630 Rrp9  ali model follow..  10  1...................................................................................................................................MSSFFTAPASEKKRKRAATADAPKKRLATTKSSSKSGSKAPTKAAAPASKKKAIERDESISGSDLDSDLSGDDEFIERRSSDAGSGDESEKEGETAQRYLEKTRKEVEQLDEYAFDAEE. 127
11 -9.6204fp9_B mol:protein length:335 mTERF domain-containing protein 2  ali model follow..  24  245......................................................................................................KDILRVSEAEFLARTACTSVEEFQVFKKLLAREE----------------------------EESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDDEEE.............................. 335
12 -9.2506c0f_w mol:protein length:250 Ribosomal RNA-processing protein 15  ali model follow..  12  3......................................................................................................................................................................SKHRVDTKDKKRTRKNAEFGREKRNSGNQELSNEPEKDTIMEGDEAEEDEQNSSSDESSKIIDNEQSDAEEDDDEEEEDDDFP.. 85
13 -9.0403cx5_F mol:protein length:146 Cytochrome b-c1 complex subunit 6  ali model follow..  23  20........................................................................................................................................................................VVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTD........................... 75
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.