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Query: 6d90_M mol:protein length:198 eL14, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAALLKASPKKAPVAKGAVAAAAAAAKVPAKKATAAGKKAAQPPKAQKGQKPPAQKAPAPKASGKKALast
1 -102.0006d90_M mol:protein length:198 eL14  ali model  100  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAALLKASPKKAPVAKGAVAAAAAAAKVPAKKATAAGKKAAQPPKAQKGQKPPAQKAPAPKASGKKA 198
2 -79.6003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  43  9ASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAKA.................................................................... 138
3 -77.5005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  33  1MPFKQFVEIGRVALINFGELVDKLAIIVDIVDDKRVLIDVLEFDAPRQTIPIQRLKLTDYVAKIQRNAAPEAAKAAAK--DFIKQFYESAWGKQVIARKNKAQMNDFQRFKYAQLEAKRDALVAKELNN..................................................................... 127
4 -75.3005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  22  1....NYIRAGRLVRIIRGPRQDRVGVVVDIIDGNRVLVENPAKKMWRHVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKSARRIAAKRAFARSTDFERYQLRVAKRSRAFWTRKVFDENDKKKPVSWHKVALKKLQKNAKK.............................................. 149
5 -75.2003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  21  59MVKSHYICAGRLVRILRGPRQDRVGVIVDIVDANRVLVENPEDKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRTAARVEAKKACAASTDFERYQLRVARRSRAHWARKVFDEKDAKTPVSWHKVALKKMQKKAAKMDSTEGAKRRMQKAIAARKAKK........................ 233
6 -74.9003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  27  19LLFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGAFTGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQKVKA.................................................... 165
7 -74.8005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  42  3.LFTRYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAGTGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLAKEQRANMSDFDRFKLMVILKQRRKVMQQKLKSLKK.................................................................. 134
8 -72.5003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  90  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQKAALLKASPKKALAKGAAAAAAAAAAKVPVKKITTAGKKAAPPPKAQKVQKPPAQKAPAPKASGEKA 213
9 -72.4004adx_7 mol:protein length:126 RPL14E  ali model follow..  39  1MVFNKFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGE--HIVRQVIPIRRVHLTKFQINVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAIKTKRANLGDFDRFRVMVLKKKLARTSAKS........................................................................ 125
10 -71.4004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  88  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKATGQKAAPAPKAQKGQKAPAQKAPAPKASGKKA 215
11 -70.3005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  99  1MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKNEVKKLQRAALLKASPKKAPVAKGAVAAAAAAAKVPAKKATAAGQKAAQPPKAQKGQKPPAQKAPAPKASGKKA 218
12 -41.9002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model follow..  28  2....PAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKTGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRMPT...................................................................................................... 95
13 -17.6003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  19  51...RKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGP-NGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDFIKTLEIKKKQKKLLKNKNEALFEDPKVQKLEGIQKDIGSLLKPEILK................................................................. 196
14 -15.9005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  21  52..TRANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPVVPVNE--ISQDYLIATSTSIDVAANATEAQVEAAAAKVPEMVDYLKAPFTIK........................................................................................................ 141
15 -12.7005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  14  31...RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGP-NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEX-----------XXXXXXXXXXXXXXXXXKEIKAERVEDQKVVDKALIAEIKK................................................................. 151
16 -12.7003jbs_A mol:protein length:176 eL6  ali model follow..  12  31...RASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEK-----------LTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKK................................................................. 151
17 -11.9005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  13  5..LRKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLISGPMNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEGEFMGDKAKKAAEQKAKKPKGIVSDARAQLQKKVDAALEAIRKDPLGK............................................................. 148
18 -11.3005t2a_t mol:protein length:195 eL6  ali model follow..  14  30...RKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVSGPMNGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEGDFMGDKQKAKAEKAAKKKKTLVSDARAQLQKKIDAALAAIKKDAQGK............................................................. 172
19 -10.8003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  19  89...RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKK----------LRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKA................................................................. 211
20 -10.6005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  13  37...RSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLVTGPFNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKL-RKKQDEGMFVQQSDSKAKQALPAQFKQLQDSVDKALLASLSK................................................................. 168
21 -10.3003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  14  30...RKSCAPGVIAIILAGRFRGRRAVILKQLPHNGPLVSGPMNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSEGDFMGDKQKARAEKAAKKKKTPVSDARAQLQKKIDAALAAIKKDAQGK............................................................. 172
22 -10.1005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  18  1....KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKHSLIAGMKKYPKKRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKLFQARYNAGSNR................................................................................................. 124
23 -10.0005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  19  3....KLLKSGRVVVVLNGRHAGKKGVVVNTWEGSKCLVAGIEKAPLKKYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKA................................................................................................................. 109
24 -9.7803jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  13  3....KFLKPGKVVIVTAGRYAGHKAVIVQNSDIGRALLAG----------------IKKYPKKVVRGMSKQTIARRSQVGVFLRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRHVFQARYNAGSSM............................................................. 126
25 -9.7103j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  16  3....KLLKPGKVIIILNGRRAGKKAVIVNTYEGQYCLVAGPLKVNKSKCINVNHILPTRYQVANDFDIKSLASDDVLKSK-----------NKKKEVKKLGKIFR--DKFLEPVNKKT................................................................................ 130
26 -9.4603j92_E mol:protein length:284 eL6  ali model follow..  16  137...RASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGP-NRVPLRRTHQKFVIATSTKIDISG------------PKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILR..................................................................... 255
27 -9.4305xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  19  2....SLLQAGRFVVMLQGRHAGKKAVVLAAYPEGYAIVMGIEKYPKKKAVNFNHVMLTRHNVKDE-------DFFKKISVEKVVAALKDAPAKKALLTEYAAVLR--QKYLNNKMA.................................................................................. 131
28 -9.2003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  21  3....KFLKAGKVAVVVRGRYAGKKVVIVKPHDEGHALVAGIERYPLKKVVNYNHLLPTRYTLDVE-----------AFKSVVSTETFEQPSQREEAKKVVKKAFE--ERHQAGKNQ.................................................................................. 128
29 -9.0103j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  27  3....KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGHALVAGPRKVTAAKVYNYNHLMPTRYSVDIP..................................................................................................................................... 90
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.