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Query: 6e88_A mol:protein length:434 Tubulin alpha-2 chain, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDVERPSYTNLNRIISQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQMVKCDPRHGKYMAVCLLYRGDVVPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGLast
1 -127.0006e88_A mol:protein length:434 Tubulin alpha-2 chain  ali model  100  1MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEGESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDVERPSYTNLNRIISQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQMVKCDPRHGKYMAVCLLYRGDVVPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVG 434
2 -125.0005Z4P Entity 3(prereleased)  ali follow..  88  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG 436
3 -125.0004ffb_A mol:protein length:447 Tubulin alpha-1 chain  ali model follow..  74  1MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDYIEVG 437
4 -124.0001z2b_A mol:protein length:448 Tubulin alpha chain  ali model follow..  88  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG 436
5 -124.0005ubq_C mol:protein length:441 Tubulin alpha chain  ali model follow..  80  1MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436
6 -123.0002xrp_B mol:protein length:452 TUBULIN ALPHA-1D CHAIN  ali model follow..  88  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG 436
7 -122.0003j8x_A mol:protein length:451 Tubulin alpha-1B chain  ali model follow..  88  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG 436
8 -122.0003du7_A mol:protein length:449 Tubulin alpha-1C chain  ali model follow..  88  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG 436
9 -119.0005ij0_B mol:protein length:426 Tubulin beta-3 chain  ali model follow..  41  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDI--------PPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY. 425
10 -119.0006e88_B mol:protein length:426 Tubulin beta-2 chain  ali model follow..  40  1MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQLERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICYRTLKLTNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLSAKGTQAYRALTVAELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI--------PPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQY. 425
11 -119.0005n5n_B mol:protein length:426 Tubulin beta chain  ali model follow..  40  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI--------PPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY. 425
12 -119.0005Z4P Entity 4(prereleased)  ali follow..  39  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVC--------DIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
13 -118.0005mlv_E mol:protein length:455 Tubulin alpha-1 chain  ali model follow..  77  1MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVG 440
14 -118.0005ubq_D mol:protein length:429 Tubulin beta chain  ali model follow..  41  1MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDI--------PPKGLKMAVTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
15 -117.0005nd4_A mol:protein length:412 Tubulin alpha chain  ali model follow..  90  1.RECISIHVGQAGVQIGNACWELYCLEHGIQPDG------------------------HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVG 409
16 -116.0005mlv_I mol:protein length:448 Tubulin beta chain  ali model follow..  40  1MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSV--------PPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
17 -115.0003ryc_B mol:protein length:445 Tubulin beta chain  ali model follow..  40  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDI--------PPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
18 -115.0001z2b_B mol:protein length:445 Tubulin beta chain  ali model follow..  39  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI--------PPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
19 -115.0002btq_B mol:protein length:426 TUBULIN BTUBB  ali model follow..  38  1VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKA-KLNRSPNYMDLNNIIALIVSSVTASLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNFTAAIDWQQGVYLAASALFRGDVKAKDVDENMATIRKSLNYASYMPASGGLKLGYAET--------APEGFASSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATLAQSYRDAS 426
20 -114.0001ffx_B mol:protein length:445 PROTEIN (TUBULIN)  ali model follow..  39  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI--------PPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
21 -113.0004ffb_B mol:protein length:463 Tubulin beta chain  ali model follow..  40  1MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDTRVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSV--------APQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQ 426
22 -112.0005w3j_B mol:protein length:457 Tubulin beta chain  ali model follow..  40  1MREIIHISTGQCGNQIGAKFWEVICDEHGLDFNGTYHGHDDIQKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKTSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNHLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGFAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSV--------APQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQ 426
23 -111.0005flz_C mol:protein length:473 TUBULIN GAMMA CHAIN  ali model follow..  26  3.GEIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTDDDTKPFFRENCRNKFTPRAIMMDSEPSVIADVENTFRGFFDPRNTWVASDGASAGNSWANGYDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMTKLQQR--IKFPSWSSSAMHVNIGRRSPY--LPLQPNENEVSGMMLSNMSTVVNVFENACNTFDKVFAKGAFLNNYNVGDLFQDEFAESREVVQSLMEDYVAAE 441
24 -109.0003cb2_A mol:protein length:475 tubulin gamma-1 chain  ali model follow..  30  3.REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASRKTTVLDVMRRLLQPKNVMVSTGRTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSP-----YLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDESREIVQQLIDEYHAAT 439
25 -108.0002bto_A mol:protein length:473 TUBULIN BTUBA  ali model follow..  34  3VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPRGNWSSKLGESSSGSYVPRAIMVDLEPSVIDNVKATSG-SLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMRFSGFLTVEISELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAM-REKLPLTYWIPTAFKIGYVEQ--------PGISHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAE 431
26 -27.2003zid_A mol:protein length:373 TUBULIN/FTSZ, GTPASE  ali model follow..  16  1MLNVLMLGVGQCGNRILDAVNR------------------QAFGGSRLAKYYSKQRFPSRVETIAINTAINDLKELKFTAAKDRL----HVPNLHGVGAN------SKGKQGFWENQEMILEEIEKRGDFDLIFVMTSVSGGTGSSFSPLMIHELKKRYKNATIVPIAVLPFREEGTIYLQ--NAAFCLREMIEEADGMILVDNQYLKRFSGDIAS----AYDRINTMVAQRLLFLIEALDSEMLSVTDLGDFKTVMNGGLRM----------LGYYQADKKSPSIRAAIKNSLREVGLLYPANVDAGEAGRAMIVIQGSLNVDEITKEIESLTETIGHVFKG-----------------IVIKKGEPRVLSVLSLERAPGLVELYEKAKWAIQEERERKD----------ARSELYEAFEQINDLEEIY.... 367
27 -21.5003v3t_A mol:protein length:360 Cell division GTPase FtsZ, diverged  ali model follow..  14  5.NKIVFAPIGQGGGNIVDTLLGI--------------------------------------NALFINTSKKDLDSLKH-------KHTYHIPYAEGCGKERKKAV-GYAQTYYKQIIAQIMEKFSSCDIV---IFVATMAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPKA--TEDIDEHMNAIACWNDIMRSTNSIYLLDNN------------KREKESDINKEFATLFNDFMNMSESHAEGVVDEDEISKLL................................................................................................................................................................................. 207
28 -21.0002xkb_A mol:protein length:427 FTSZ/TUBULIN-RELATED PROTEIN  ali model follow..  9  24..RWGVIGAGQKGNKEADLFAGY-----------------------------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRI----HFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI-FMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL-----------RFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLG-----------EYKRLDEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQEQLRAEAQRKQDEEKVDISFAT............ 421
29 -20.9003m89_A mol:protein length:427 FtsZ/tubulin-related protein  ali model follow..  10  38..RWGVIGAGQKGNKEADLFAGY-----------------------------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRI----HFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI-FMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL-----------RFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRN................................................................................................... 359
30 -20.6004b46_A mol:protein length:395 CELL DIVISION PROTEIN FTSZ  ali model follow..  18  2..KLAMIGFGQAGGKVVDKFVE----------------------------YDRERNAGIVRAAVAVNSAKADLLGLKNIPKDQRVLIGQSRVKGHGVGAD------ELGAEIAEEDIDEVQGAIDSVHEVDAFLVVSGLGGGTGSGGAPVLAKHLKRIY-TEPVYGLGILPGSDEGGIYTL--NAARSFQTFVREVDNLLVFDNDAWRKTGESV----QGGYDEINEEIVNRFAGEVQDGQEVAESVVDSSEIINTL................................................................................................................................................................................. 223
31 -19.9004b45_A mol:protein length:349 CELL DIVISION PROTEIN FTSZ  ali model follow..  20  2..KTVLIGVGQAGGKLASALQSF----------------------------DRQTGFGAVLDAVAVNTAKADLQSLPV---------ETVLIGQDRVNGHGVGGDNELGAAVMESDQTEVMSALDG-AEAESIFVVAGLGGGSGSGGAPVLAKALAGVY-DVPVYVLGILPGADEGALYQV--NAGRSLKTVAREADAVLLVDNDAFRSAGESM----SEGYDAINEAIARRVGLLLAATEGVGESVVDTSEVINTL................................................................................................................................................................................. 217
32 -19.5004ei7_A mol:protein length:389 Plasmid replication protein RepX  ali model follow..  15  17..KFGFLGLGMGGCAIAAECANK----------------------------TQIKNNKYPYRAILVNTNSQDFNKIEIKNTGNV-RKIQLEGYEQGAARNPQVGE-EAFVKHETKIFEAVKQEFEDRDFI---WITCGLGGGTGTGALLKAIEMLYEH--DYNFGLLLTLPDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANTSYSNKYIADALNLVTSSFTPFSDTHFDASEFAQVI................................................................................................................................................................................. 243
33 -18.4003j4t_F mol:protein length:490 FtsZ/tubulin-related protein  ali model follow..  9  30..RWGVIGAGQKGNKEADLFAGY-----------------------------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRI----HFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI-FMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL-----------RFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLG-----------EYKRLDEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQE-----QLRAEAQRKQDEEKVDISFATNRVQK.. 432
34 -17.0003zbp_A mol:protein length:333 PHIKZ039  ali model follow..  13  6..KTRIYFCGGAGFRIGELFHGY--------------------------------------DVCYIDTSVQNKHKHNTDDNTIIIEADTARKRAIGMGKD------KAAAELISAHIPAIAHHFPAGDTN---IVVYSMGGASGSTIGPSLVSHLQQQGEVVVSVVIGSYDSDISLRNSSGSLKTFEGVSSVSKVPMIINYHENV------------EGIPQSMVNQNILEVLNALVILFN-QEHQSLDLMDITNWA................................................................................................................................................................................. 209
35 -14.8003j5v_a mol:protein length:320 PhuZ201 subunit  ali model follow..  15  9..KVCLIFAGGTGMNVATKLVDL--------------------------------------AVHCFDTCDKNVVDVHRS------VNVTLTKGTRGAGGN------KVILPLVRPQIPALMDTIPEADFY---IVCYSLGGGSGSVLGPLITGQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVPNT------------QGRSYESINDEIAEKIRKVVL-LVNQNHGRLDVHDVANWV................................................................................................................................................................................. 200
36 -13.3002rhh_A mol:protein length:325 Cell Division Protein ftsZ  ali model follow..  18  1MASIKVIGVGGGGNNAVNRMIENEVQGVEY---------------------------------IAVNTDAQALNLSKA--------EVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMV---FVTAGMGGGTGTGAAPVIAQIAKD----LGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLE-AFREADNVLRQGVQGISDLIATPGLINLDFADVKTIM................................................................................................................................................................................. 208
37 -13.3004e6e_A mol:protein length:314 Cell division protein ftsZ  ali model follow..  16  11..VIKVVGIGGGGVNAVNRMIEEGLKGVEF---------------------------------IAINTDAQALLMSDA--------DVKLDVGRELTRGLGAGANPDVGRKAAEDHREEIEEVLKGADMV---FVTAGEGGGTGTGGAPVVANIARS----LGALTIGVVTRPFSFEGKRRATQAEAGIAMLREEVDTLIVIPNDRLLSISDRQVSVLD-AFKAADQVLLSGVQGITDLITTPGLINLDFADVKSVM................................................................................................................................................................................. 216
38 -13.1003wgj_A mol:protein length:308 Cell division protein FtsZ  ali model follow..  15  5..TLKVIGVGGGGNNAVNRMIDHGMNNVEF---------------------------------IAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKE----MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIATPGLINLDFADVKTIM................................................................................................................................................................................. 210
39 -13.0002r6r_1 mol:protein length:338 Cell division protein ftsZ  ali model follow..  18  9..KIKVIGVGGGGSNAVNRMYEDGIEGVEL---------------------------------YAINTDVQHLSTLKV--------PNKIQIGEKVTRGLGAGAKPEVGEEAALEDIDKIKEILRDTDMV---FISAGLGGGTGTGAAPVIAKTAKE----MGILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKD-AFKEVDSVLSKAVRGITSIVVTPAVINVDFADVRTTL................................................................................................................................................................................. 214
40 -12.4001fsz_A mol:protein length:372 FTSZ  ali model follow..  16  39..KITVVGCGGAGNNTITRLKMEGIEGAKT---------------------------------VAINTDAQQLIRTKA--------DKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMV---FITCGLGGGTGTGSAPVVAEISKK----IGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNM----KLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVM................................................................................................................................................................................. 243
41 -12.1001w5f_A mol:protein length:353 CELL DIVISION PROTEIN FTSZ  ali model follow..  17  23..KIKVIGVGGAGNNAINRMIEIGIHGVEF---------------------------------VAVNTDLQVLEASNA--------DVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMV---FITAGFGGGTGTGASPVIAKIAKE----MGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETLHQGVKGISELITKRGYIRLTSRFARIESV................................................................................................................................................................................ 229
42 -11.9001rlu_A mol:protein length:382 Cell division protein ftsZ  ali model follow..  16  13..VIKVVGIGGGGVNAVNRMIEQGLKGVEF---------------------------------IAINTDAQALLMSDADVKLDV---GRDSTRGLGAGAD------EVGRKAAEDAKDEIEELLRGADMV---FVTAGEGGGTGTGGAPVVASIARK----LGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMD-AFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIM................................................................................................................................................................................. 218
43 -11.7002vaw_A mol:protein length:394 CELL DIVISION PROTEIN FTSZ  ali model follow..  18  13..VIKVIGVGGGGGNAVNHMAKNNVEGVEF---------------------------------ICANTDAQALKNIAARTVLQL---GPGVTKGLGAGAN------EVGRQAALEDRERISEVLEGADMV---FITTGMGGGTGTGAAPIIAEVAKE----MGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-AFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVM................................................................................................................................................................................. 218
44 -11.5002vam_A mol:protein length:382 CELL DIVISION PROTEIN FTSZ  ali model follow..  18  13..SIKVIGVGGGGNNAVNRMIENEVQGVEY---------------------------------IAVNTDAQALNLSKAEVKMQI---GAKLTRGLGAGAN------EVGKKAAEESKEQIEEALKGADMV---FVTAGMGGGTGTGAAPVIAQIAKD----LGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLE-AFREADNVLRQGVQGISDLIATPGLINLDFADVKTIM................................................................................................................................................................................. 218
45 -11.3004dxd_A mol:protein length:396 Cell division protein FtsZ  ali model follow..  15  13..TLKVIGVGGGGNNAVNRMIDHGMNNVEF---------------------------------IAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKE----MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIM................................................................................................................................................................................. 218
46 -11.3004m8i_A mol:protein length:400 Cell division protein FtsZ  ali model follow..  15  13..TLKVIGVGGGGNNAVNRMIDHGMNNVEF---------------------------------IAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTAGMGGGTGTGAAPVVAKIAKE----MGALTVGVVTRPFGFEGRKRQTQAAAGVESMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIM................................................................................................................................................................................. 218
47 -10.3003wgk_A mol:protein length:390 Cell division protein FtsZ  ali model follow..  15  15..TLKVIGVGGGGNNAVNRMIDHGMNNVEF---------------------------------IAINTDGQALNLSKAESKIQI---GEKLTRGLGAGAN------EIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKE----MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVGAGLDADVKTIMSN.................................................................................................................................................................................. 220
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.