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Query: 6ek7_A mol:protein length:410 YaxA, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TQTQLAIDNVLASAESTIQLNELPKVVLDFITGEQTSVARSGGIFTKEDLINLKLYVRKGLSLPTRQDEVEAYLGYKKIDVAGLEPKDIKLLFDEIHNHALNWNDVEQAVLQQSLDLDIAAKNIISTGNEIINLINQMPITLRVKTLLGDITDKQLENITYESADHEVASALKDILDDMKGDINRHQTTTENVRKKVSDYRITLTGGELSSGDKVNGLEPQVKTKYDLMEKSNMRKSIKELDEKIKEKRQRIEQLKKDYDKFVGLSFTGAIGGIIAMAITGGIFGAKAENARKEKNALISEVAELESKVSSQRALQTALEALSLSFSDIGIRMVDAESALNHLDFMWLSVLNQITESQIQFAMINNALRLTSFVNKFQQVITPWQSVGDSARQLVDIFDEAIKEYKKVYGLast
1 -84.3006ek7_A mol:protein length:410 YaxA  ali model  100  1TQTQLAIDNVLASAESTIQLNELPKVVLDFITGEQTSVARSGGIFTKEDLINLKLYVRKGLSLPTRQDEVEAYLGYKKIDVAGLEPKDIKLLFDEIHNHALNWNDVEQAVLQQSLDLDIAAKNIISTGNEIINLINQMPITLRVKTLLGDITDKQLENITYESADHEVASALKDILDDMKGDINRHQTTTENVRKKVSDYRITLTGGELSSGDKVNGLEPQVKTKYDLMEKSNMRKSIKELDEKIKEKRQRIEQLKKDYDKFVGLSFTGAIGGIIAMAITGGIFGAKAENARKEKNALISEVAELESKVSSQRALQTALEALSLSFSDIGIRMVDAESALNHLDFMWLSVLNQITESQIQFAMINNALRLTSFVNKFQQVITPWQSVGDSARQLVDIFDEAIKEYKKVYG 410
2 -74.3006gy6_A mol:protein length:424 XaxA  ali model follow..  53  2...ENDMSSNQTLAEKKIPVSEVPSATLKMLTSQAEGVARPGGIFTKGDLINIKLYVKHSLELPFTLEGVKEYIGYNDIDIDGLKPAKMATLFKEIHDHALSWSGVESKVQQQSIDLENAGKQITLTGDEIISVIDQMPIIERVKNKLGDLTDKQLAEITYTNDDKEIAVELGNILESMKKDIKRQQENTQKVKTAVSDFKLKLIGGELSDGTIAQGLQPQISSKKKLMDDNNLSTTIKDLQSKIDEKNKEIDQFQKDYNKYVGLAFSGMVGGIISWAITGGIFGDKAEKARKQKNKLIDEVKDLQSQVKDKSALQTSVQNLSLSFAGIHTSMVDAEEALNHLDFMWNTMLTQITTSRDKFDDINDALKLTSFVIAFKQVIEPWRDVQGSAAQLIQTFDEALAEYKKLYH 408
3 -55.0005ghe_A mol:protein length:428 Pesticidal crystal protein Cry6Aa  ali model follow..  10  18QGSMIIDSKTTLPRHSLIHTIKLNS---NKKYGPGDMTNGNQFIISKQEWATIGAYIQTGLGLPVNEQQLRTHVNLSQDISIPSDFSQLYDVYCSDKTSAEWWKNLYPLIIKSANDIASYGFKVAGDPSIKKDGYFKK---------LQDELDNIVDNNSDDDAIAKAIKDFKARCGILIKEAKQYEEAAKNIVTSLDQFLHGDQKKLEGVINIQKRLKEVQTALNQAHGE--SSPAHKELLEKVKNLKTTLERIKAEQDLEKKVEYSFLLGPLLGFVVYEILENTAVQHIKNQIDEIKKQLDSAQHDLDRDVKIIGMLNSINTDIDNLYSQGQEAIKVFQKLQGIWATIGAQIENLRTTSLQVQDSDDADEIQIELEDASDAWLVVAQEARDFTLNAYSTNSR...... 410
4 -54.2005kuc_A mol:protein length:475 Pesticidal crystal protein Cry6Aa  ali model follow..  10  2...............IIDSKTTLPRHSLIHTIKLNSNTNGNQFIISKQEWATIGAYIQTGLGLPVNEQQLRTHVNLSQDISIPSDFSQLYDVYCSDKTSAEWWKNLYPLIIKSANDIASYGFKVAGDPSIKKDGYFKK---------LQDELDNIVDNNSDDDAIAKAIKDFKARCGILIKEAKQYEEAAKNIVTSLDQFLHGDQKKLEGVINIQKRLKEVQTALNQAHGE--SSPAHKELLEKVKNLKTTLERIKAEQDLEKKVEYSFLLGPLLGFVVYEILENTAVQHIKNQIDEIKKQLDSAQHDLDRDVKIIGMLNSINTDIDNLYSQGQEAIKVFQKLQGIWATIGAQIENLRTTSLQVQDSDDADEIQIELEDASDAWLVVAQEARDFTLNAYSTNSR...... 390
5 -41.2002nrj_A mol:protein length:346 Hbl B protein  ali model follow..  14  23.......................................KETLQKAGLFAKSMNAYSYMLIKNPDVN------FEGITINGYVDLPGRIVQDQKNARAHAVTWTKVKKQLLDTLNGIVEYDTTFDNYYETMVEAIN-----------------------------TGDGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQ---------GADVDADQKRLEEVLGSVNYYKQLESD-------GFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQKADFKFLKPNLNAAKDSWKTLRTDAVTLKEGIKELKVE...... 340
6 -35.7004k1p_A mol:protein length:360 NheA  ali model follow..  10  28.............................................LGSQSPLIQAYGLVILQQPDIKVN---------------AMSSLTNHQKFAKANVREWDEYNPKLIDLNQEMMRYSIRFNSYYSKLYELAGNI------------------------NEDEQSKADFTNAYGKLQLQVQSIQENMEQDLLELNRFKTVLDKDSNNLSIKADEAIKTLQGSSGDIVK--LREDIKRIQGEIQAELTTILNRPQETNQTAQTKTIDFVSIGTLSNEIVNAADSQTREAALRIQQKQKELLPLIQKLSQTEAEATQITFVEDQVSSFTELIDRQITTLETLLTDWKVLNNNMIQIQKNVEEGTYT-DSSLLQKHFNQIKKVSDEMNKQTNQFEDYVTNVEVH...... 360
7 -32.9006ezv_X mol:protein length:396 Non-hemolytic enterotoxin lytic component L1  ali model follow..  12  41...............................................LATTVITAQCHAILNTQFT-----------PPTVKPDWFDDLSKKLDSAKLVAKQWDDLGPQVSSIPSSVINFDATFQASIDAIHELYKADP--------------------TASGKDNTTVQQASQIMTALSSQVSGIEATVKGMNKELSDWGVKMQAAHDDLVNGATNIQKTIIDL---------QTDIESMNNAIDNNRAAIEKLNKDLVYAQVAVGVGIFGIAAVGAASIIAGGVTWGVLQNQIDDDYDSIAQEQKQKAEDQQQIIALQGLSNASSAVVSAIETSTSVLSDFETTWTVFGNELDDVVTKLNNGASMQSIIMEKVMSDAAKNEWDDAVELAKQLASAKIAIETK...... 380
8 -11.3005j1i_A mol:protein length:373 Plectin  ali model follow..  24..............................................................LEACETRTVHRLRLPLDKEPARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLALPEP----SPAAPTLRSELELTLGKLEQVRSLSAIYLEKLKTISLVIRGTQGAEEVLRAHEEQLKEAQPELEATKASLKKLRAQAEAQQPTFDALRDELRGAQEVGERL-EVERWRERVAQLLERWQAVLAQTDVRQRELEQLGRQL-----------------YRESADPLGAWLQDARRRQQAVREQLRQEQALLEEIERHGEKVEECQRFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQEYVDLRTHYSELTTLTSQYIKFISETLRRME.... 373
9 -11.1006gao_A mol:protein length:240 Outer capsid protein sigma-1  ali model follow..  1...................................................................................................GSHMEEIKKQVQVNVDDIRAANIKLDGLGRQIADISNSISTIESRLGEMD-----------------NRLVGISSQVTQLSNSVSQNTQSISSLGDRINAVEPRVDSLDTVTSNLTGRT-------------STLEADVGSLRTELAALTTRVTTEVTRLD-------------------------GLINSGQNSIGELSTRLSNVETSMVT---TAGRGLQKNGNTLNVIVGNGMWFNSSNQLQLDLSGQSKGVGFVGTGMVVKIDTNYFAYNSNGEITLVSQINELPSRVSTLESA............. 240
10 -10.8002tma_A mol:protein length:284 TROPOMYOSIN  ali model follow..  2.......................................................................................................DAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRS---KQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKL-EEAEKAADESERKVIESRAQKDEEKMEIQEIQLKEAKHIAED----------------------ADRKYEEVARKLVIIESDLERAEERAELSEELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER--SVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS... 283
11 -10.7001c1g_A mol:protein length:284 TROPOMYOSIN  ali model follow..  2.......................................................................................................DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRS---KQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGKVIESRAQKDEEKMEIQEIQLKEAKHIAED-----------------------DRKYEEVARKLVIIESDLERAEERAELSEG---KCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS... 283
12 -10.3003kbt_A mol:protein length:326 Spectrin beta chain, erythrocyte  ali model follow..  1...............................................SNANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLL--------------------------------------------SAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLEN-----MYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKF..... 326
13 -10.2006gap_A mol:protein length:261 Outer capsid protein sigma-1  ali model follow..  1.....................................................................................MGSSSSGLVPRGSHMASSKGLESRVSALEKTSQIHSDTILRITQGL----------DDANKRIIALEQSRDDLVASVSDAQLAISRLESSIGALQTVVNGLDSSVTQLGARVGQLETGLAELRVDHDNLVARV-------------DTAERNIGSLTTELSTLTLRVTSIQADFESRIST------------------LERTAVTSAGAPLSIRNNRMTMGLNDSGNNLAIRLPGNTGLNIQNGGLQFRFNTDQFQIVNNNLTLKTTVFDSINSRIGATEQS........................................... 245
14 -9.8506gy7_A mol:protein length:367 XaxB  ali model follow..  4.....................................................LEVLFQGPMSDNTLSQKENMYPEINIKAMNQAVNTIWLL---AQRQTSGIEIINDKVKRISLYSREFDEMMRDSLAQLAPVLKQLT-SDAAFQTIAQIDEALADPSLSKDDREALTLERNNLIQNLSKHIDNVIVSFTGRTSKLTNKISDISD--MVIAERLQDLVTQTESQKTELQSDPKTEKRNKLDADREKIIESQDVIRQN-KKEAIKQAIKQGAEIARKILGKVSEGLKYIDLADARMKLSDQIDQLITETDELKAKIREVESGLKDVMQIDTERTTLLTEAVKIEQVWISFAEQLHKLSNDEINQQDLSNINGQLDFLNNLTLQYNKLK...................... 361
15 -9.7301quu_A mol:protein length:250 HUMAN SKELETAL MUSCLE ALPHA-ACTININ 2  ali model follow..  2......................................................................................................................................................................................SSNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELD--------------AVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETILEFAKRAAPFNNWMEGAIEEIQSLITAHEQFKATLPEADGERQSIMASSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQH.... 246
16 -9.5605xg2_A mol:protein length:260 Chromosome partition protein Smc  ali model follow..  3......................................................................................GAIVRWGKRKEKLIEEIRAREEERNALVVRLGEIDRTFAVAREEF----------DTVVKELEEARKSLYEGEARIKRAEEEKERLKAEILTGEARLPGLRERAENLRRLVEEKRAEISELERRLSSITSKRSGESQSFELRIKLSDLEKELELARKDLEKVLAEERAVREEIEV-----------------------KRRINELDTLIERERGELAKLRGRIERLERKRDKLKKENPEARELTEKIRAVEKEIAALREELSRVEGKLEGLESKVDAGSSS........................................... 256
17 -9.4006ek4_A mol:protein length:353 PaxB  ali model follow..  18....................................................................................NVKTLSQAVKNIWRLSHQ-EIIQEKTLRISLYSRDLDEAARASVPQLQTVLRQLP-PQDYFLTLTEIDTELEDPELDDETRNTLLEARSEHIRNLKKDVKGVIRSLRKEANLMASRIADVSNILERLESSLKEEQERKAEIQADIAQ--QEKNKAKLVVDRNKIIESQDVIRQYNLADMFKDYIPNISDLDKLDLANPKKELIKQAIKQGVEIAKKILGNISKGLKARAKLDERINQINKDCDDLKIQLKGVEQRIAGIEDV-HQIDKERTTLLLQAAKLEQA--WNIFAKQLQNTIDG-QDLTKIIHKQLDFLDDLALQYHS... 349
18 -9.3004uxv_A mol:protein length:545 SEPTATION RING FORMATION REGULATOR EZRA  ali model follow..  153..............KDLDEIWSGIKQFEEETEGGNYITARKVLLEQDRNLERLQSYID---DVPKLLADCKQTVP---------QIAKLKDGYGEMKE-----KGYKLEHIQLDKELENLSNQLKRAEHVLMTELD----IDEASAILQLIDENIQSVYQQLEGEVEAGQSVLSKMPELIIAYDKLKEEKEHTKAETELVKEAFEKRLDEIGKLLSSVKDKLDAEHVAYSL--LVEEVASIEKQIEEVKKEHAEYRENLQA----------------------LRKEELQARETLSNLKKTISETARLLKTSSHIQEMLENAHHHIQETVNQLNELPLNMEEAGAHLKQAEDIVNRASRESEELVEQVILI------EKIIQFGNRFRSQNHILSEQLKEAERRFYADY. 517
19 -9.1503edu_A mol:protein length:218 Spectrin beta chain, erythrocyte  ali model follow..  1..................................................................................................................................................................................................GSLFQLKRET-----------DDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR.... 218
20 -9.1406ek8_A mol:protein length:344 YaxB  ali model follow..  11  18....................................................................................NFKIFSQGVKNISHLAQF-EVLQEKALRVSLYSQRLDVIVRESLSSLQVKLEN-TLALTYFTTLEEIDEALISQDIDEESKSEMRKERINIIKNLSNDITQLKQLFIEKTELLDKSSSDLHN---VIIEGTDKVLQAEQLRQKQLTEDTKELERKEIEKKRDKIIEALDVIREH----------------------------NLVDAFKDLIPTGENLSELDLAKPEIELLKQSLEITKKLLGQFSEGLKDLTDARKKLDNQIDTASTRLTELNRQLEQSEKLIAGVNAVIKIDQEKSAVEKLSRAWHIFIHEITALQGT...... 318
21 -9.1102bsg_A mol:protein length:487 FIBRITIN  ali model follow..  1............................................MTDIVLNDLP-FV----GPPAEGQSRISWI----------------EEILGADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDI---KTIQGILDVSGDIEALA----GINKKDISDLKTLTSEHTEILNGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINPVVGNPSSGMKHRIINNTDVITSQGIRLSE-----------------LETKFIESDVGSLTIEVGNLREELGPKPPSFSRLNEIDTKQTTVESDISAIKTSINSIITSVNTNTDNIASINLELNQSGGIKQRLTVIETSIGSDDIPSSIKGQIKDNTTSIESLNGIVGENTSS...... 333
22 -9.0703edv_A mol:protein length:323 Spectrin beta chain, brain 1  ali model follow..  11  3...............................................HMRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFAR------DTGNIGQERVDTVNHLADELINSGHSDAATIA------------------------------EWKDGLNEAWADLLELIDTRTQILAASYE-LHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVET--LQRMHTTFEHDIQALGTQVRQLQEDAARLQAAY--------------ADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFSMVRDLMLWMEDVIRQIEAQVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSEEIKEKLLQLTEKRKEMIDKWEDRWEWLR........... 322
23 -9.0701u4q_A mol:protein length:322 Spectrin alpha chain, brain  ali model follow..  10  4...................................................KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAF----TSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDD--NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESL-----------------------EYQQFVANVEEEEAWINEKMTLVASEDY-LAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITA------------KMKGLKGKVSDLEKAAAQRKAKLDENSA....... 322

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205