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Query: 6eu0_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAFLast
1 -110.0006eu0_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7  ali model  100  1MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFYTGSMSLIIDQQENSKSGKRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF 251
2 -103.0006cnb_Q mol:protein length:251 DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7,DNA-directed RNA polymerase III subunit RPC7  ali model follow..  100  1MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPFXXXXXXXXXXXXXXXXXXXRKPNIILDEDDTNDGIERYSDKYLKKRKIGISIDDHPYNLNLFPNELYNVMGINKKKLLAISKFNNADDVFTGTGLQDENIGLSMLAKLKELAEDVDDASTGDGAAKGSKTGEGEDDDLADDDFEEDEDEEDDDDYNAEKYFNNGDDDDYGDEEDPNEEAAF 251
3 -28.4005fja_Q mol:protein length:88 DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC7  ali model follow..  100  1MSSYRGGSRGGGSNYMSNLPFGLGYGDVGKNHITEFPSIPLPINGPITNKERSLAVKYINFGKTVKDGPXXXXXXXXXXXXXXXXXXX................................................................................................................................................................... 88
4 -10.5005oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  6  346.................................................................EFYPWVMEDFDGYNTWVGSYEAGNSDSDDGSFTMIPADKVYKFTARNKYATXXXXXXXXXXXXLTIDEAEKRMDKKSGEVPRWLMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFG.. 536
5 -10.3005fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  7  389........................................................................................................ADKV--KFTARNKYAT-------------DEAEKRMDKKSGEVPRMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFG.. 524
6 -10.1004ui9_D mol:protein length:121 ANAPHASE-PROMOTING COMPLEX SUBUNIT 15  ali model follow..  18  56.........................................................................................................................................................................................KPASEHYDDEEEEDDEDDEDSEEDSEDDEDMQDMDEMNDYNESP--DDGEVNEVDMEGNEQDQDQW 119
7 -9.8304v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  7  384........................................................................................................ADKV--KFTARNKYAT-------------DEAEKRMDKKSGEVPRMKHLDNIGTTTTRYDRTRRKLKAVADQQAMDEDDRDDNSEVELDYDEEFADDEEAPIIDGNEQENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFG.. 519
8 -9.7305oql_C mol:protein length:648 Utp3  ali model follow..  11  1.......................................................................MAKKRKATRPAEPQGPKEIDPKDARLTVNNYMDVADSEDEYWYKKDRL---------------------SDDEPRSKRLKRQDKEDAFLEQSDEEIFDDELSSEEEEEDDEDERRAPTKKDGKKGAALDDDDDAELLGLGKKKDDDEIRDEGWWSKKEYYNADAIETEQDALEEEKEA.. 162
9 -9.6605oql_X mol:protein length:630 Rrp9  ali model follow..  10  1...................................................................................................................................MSSFFTAPASEKKRKRAATADAPKKRLATTKSSSKSGSKAPTKAAAPASKKKAIERDESISGSDLDSDLSGDDEFIERRSSDAGSGDESEKEGETAQRYLEKTRKEVEQLDEYAFDAE.. 126
10 -9.5103wa0_G mol:protein length:96 Protein VPRBP  ali model follow..  18  7.......................................................................................................................................................................................DDDTDDLDELDTDQLLEAELEEDDNNENAGEDGDNDFSPSDEELANLLEEGEDGEDEDSDADEE.... 70
11 -9.3503cx5_F mol:protein length:146 Cytochrome b-c1 complex subunit 6  ali model follow..  23  20........................................................................................................................................................................VVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTD........................... 75
12 -9.3404fp9_B mol:protein length:335 mTERF domain-containing protein 2  ali model follow..  27  281......................................................................................................................................................................SESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDDEEE.............................. 335
13 -9.1106c0f_w mol:protein length:250 Ribosomal RNA-processing protein 15  ali model follow..  12  3......................................................................................................................................................................SKHRVDTKDKKRTRKNAEFGREKRNSGNQELSNEPEKDTIMEGDEAEEDEQNSSSDESSKIIDNEQSDAEEDDDEEEEDDDFP.. 85
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.