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Query: 6fti_1 mol:protein length:162 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EPLLVVAAFYILFFTVIIYVRLAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALast
1 -15.7006fti_1 mol:protein length:162 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1  ali model  100  1EPLLVVAAFYILFFTVIIYVRLAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 162
2 -14.6002qzv_A mol:protein length:873 Major vault protein  ali model follow..  17  696......................ARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQ 835
3 -14.1005znm_A mol:protein length:387 Colicin-D  ali model follow..  15  1.....................MHEEAVARAEAEKAKAELFSKAGVNQPPVYTQEMMERANSVMNEQGALVLNNTASSVQLAMTGTGVWTAAGDIAGNISKFFSNALEKVTIPEVSPLLMRISLGALW................................... 106
4 -12.5006bp7_A mol:protein length:934 Major vault protein  ali model follow..  16  765....................KILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTL.. 904
5 -12.3005i4d_A mol:protein length:343 Superantigen-like protein  ali model follow..  8  1.....................MGSSENLYFQGEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKTLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIKQA 141
6 -11.4006ar6_A mol:protein length:2067 Toxin B  ali model follow..  14  958......AAFFILSVAMKVYAQLFSTGLNTITDAAKVVELVSTALDETIDLLPTLSEGLPIIATIIDGVSLGAAIKELSETSDPLLRQEIEAKIGIMAVNLTTATTAIITSSLGIASGFSILLVPLAGISAGIPSLVNNELVLRDKATKVV............ 1118
7 -11.3006ekv_A mol:protein length:750 Toxin complex component ORF-X2  ali model follow..  8  552...................VSAVVGTVFSMILGAGMKLAGSALSKAGKLIRSKATTIKGRKKIYINRSNVRQLRKDSGVTEMELQRINRRNSSIASEDARFISNNGTTSIQTLGDMKKKPMSTGQRIAIGVKKITGTAVMFGAVGLGMNFGEMLINYINAME 694
8 -10.9004r04_A mol:protein length:1838 Toxin A  ali model follow..  11  989...............VQLYAQLFSTGLNTIYDSIQLVNLISNAVNDTINVLPTITEGIPIVSTILDGINLGAAIKELLDEHDPLLKKELEAKVGVLAINMSLSIAATVASIVGIGAEVTIFLLPIAGISAGIPSLVNNELILHDKATSVV............ 1123
9 -10.6005oek_A mol:protein length:43 Growth hormone receptor  ali model follow..  34  15.PWLLIIIFGIFGLTVMLFVFLFS.......................................................................................................................................... 37
10 -9.5104rco_A mol:protein length:295 Putative uncharacterized protein  ali model follow..  5  1.....................MGSSENLYFQGTTLSSTKVEAPQSTPPSTKIEAPQSKPNATTPPSTKVEAPQQTANATTPPSTKVTTPPSTNTPQPMQSTKSDTPQSPTTKQVPTEINPKFKD...................................... 103
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.