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Query: 6gcs_M mol:protein length:136 NUMM SUBUNIT, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MLSRFVSKRAFSVSTQVSKSIISYNGNTIEIPEEYTKQAPNRDSTWAPAQASKTEIYKNNMVRFEQKDLSKQPMPYAGIELIAQQPVRFVHGNTAVCDGANHNGPGAQGHPKIFINVDAPGSHACQYCGTRYEKEHLast
1 -70.1006gcs_M mol:protein length:136 NUMM SUBUNIT  ali model  100  1MLSRFVSKRAFSVSTQVSKSIISYNGNTIEIPEEYTKQAPNRDSTWAPAQASKTEIYKNNMVRFEQKDLSKQPMPYAGIELIAQQPVRFVHGNTAVCDGANHNGPGAQGHPKIFINVDAPGSHACQYCGTRYEKEH 136
2 -43.2006g2j_R mol:protein length:116 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  29  1..............MAAVLTFRRLLTLPRAARGFGVQVSPSGEKITHTGQVYDEKDYRR--VRFVDR--QKEVNENFAIDLIAQQPVNEVEHRIIACDG----GGGALGHPKVYINLDKEKTGTCGYCGLQFKQHH 116
3 -42.9005xtb_T mol:protein length:95 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  31  2...................................VRVSPTGEKVTHTGQVYDDKDYRRIRF----VGRQKEVNENFAIDLIAEQPVSEVETRVIACDG----GGGALGHPKVYINLDKETTGTCGYCGLQFRQHH 95
4 -40.2005lnk_b mol:protein length:96 Mitochondrial complex I, 13 kDa subunit  ali model follow..  31  2...................................VRTSPTGEKVTHTGQVYDDEDYRRVRF----VGRQKEVNENFAIDLIAEQPVSQVGSRVISCDG----GGGALGHPRVYINLDKEKTGTCGYCGLQFRQQH 96
5 -40.1005o31_R mol:protein length:96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  30  2...................................VRTSPTGEKVTHTGQVYDDGDYRKVRF----VGRQKEVNENFAIDLIAEQPVSQVGSRVISCDG----GGGALGHPRVYINLDKEKTGTCGYCGLQFRQQH 96
6 -38.0005gpn_x mol:protein length:123 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  27  1MAAVTFLRLLGRSGAGAR-------NLLGGSRCFGVRTSPTGEKVTHTGQAYDDGDYRR--VRFSDR--QKEVNENFAIDLIAEQPVSEVGSRVISCDG----GGGALGHPRVYINLDKTKTGTCGYCGLQFRQPH 123
7 -33.3002jz8_A mol:protein length:87 Uncharacterized protein BH09830  ali model follow..  19  2.......................................................................ADYNIPHFQNDLGYKIIEIGVKEFMCVG----ATQPFDHPHIFIDMGSTDEKICPYCSTLYRYDP 62
8 -33.0002jvm_A mol:protein length:80 Uncharacterized protein  ali model follow..  26  1..................................................................MRRQPKTRQESARMSIEAPETVVVSTWKVACDG----GEGALGHPRVWLSIPETGFVECGYCDRRYIHES 67
9 -27.5002jrr_A mol:protein length:67 Uncharacterized protein  ali model follow..  30  2................................................................................TIQAPETKIVDKSRVACDG----GEGALGHPRVWLQIPDTGWVECPYCDCKYVLKG 54
10 -19.3002y69_F mol:protein length:129 CYTOCHROME C OXIDASE SUBUNIT 5B  ali model follow..  10  1.MASRLLRGVGALASQALRARGPNGVSVVRSMASGGGVPTDEEQATGLEREVMLAARKG-----QDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDN------STVIWFWLHKGEAQRCPSCGTHYKLAH 129
11 -15.3002odx_A mol:protein length:80 Cytochrome c oxidase polypeptide IV  ali model follow..  14  7...................................................................DTKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAG-----SHTIMWLKPTVNEVARCWECGSVYKLNP 70
12 -10.6002ctd_A mol:protein length:96 Zinc finger protein 512  ali model follow..  20  10.....................................................................RKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLH 81
13 -10.3005apo_y mol:protein length:401 CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1  ali model follow..  10  73..KKELKRREKQALLEKKKKLLEIARANMLENMQKSQEGNTPDLSKLSLQENEENKEKEEPKKEEPEQLTEEEMXXXXXXXXXXXXXDIPLEQCLFCE-HFKDVEENLEHPEQYMSEKIGLGNICIVCNYQGVRQH 233
14 -9.5202wbt_A mol:protein length:129 B-129  ali model follow..  12  80................................................................................................CLMPFSSSVSLKQHIRY-----TEHTKVCPVCKKEFALDH 119
15 -9.4605apn_y mol:protein length:414 Cytoplasmic 60S subunit biogenesis factor REI1  ali model follow..  11  88..KKELKRREKQALLEKKKKLLEIARANMLENMQKSQEGNTPDLSKLSLQENEENKEKEEPKKEEPEQLTEEEMAERVMQEKLRNRVDIPLEQCLFCEHNKHFKD--LEHPEQYMSEKIGLGNICIVCNYQGVRQH 248
16 -9.4402d9h_A mol:protein length:78 Zinc finger protein 692  ali model follow..  25  13................................................................................................CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPH 57
17 -9.4203zms_C mol:protein length:509 INSULINOMA-ASSOCIATED PROTEIN 1  ali model follow..  17  445................................................................................................CGESFASKGAQERHLRLL---HAAQVFPCKYCPATFLTRH 486
18 -9.3104njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  12  4..........................................................................SSSGLVPRGSHMTYAVKEIFYTLQGE----GANAGRPAVFCRFAG--NLWSGREEDRAQAV. 59
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.