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Query: 2w0c_P mol:protein length:104 PROTEIN P3, from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNTSVPTSVPTNQSVWGNVSTGLDALISGWARVEQIKAAKASTGQGRVEQAMTPELDNGAAVVVEAPKKAAQPSETLVFGVPQKTLLLGFGGLLVLGLVMRGNKLast
1 -6.840PF17609.2; UL124_HCMVM/25-150; Family of unknown function  ali follow..  26  10.......................................STATGVTSDSQQNTTQLPASSAAALSLPSASAQAHSPSSFSDTYPTATALCGTLVVVGIVL.... 71
2 -6.690PF16165.5; M3ZV64_XIPMA/1844-2004; Ferlin C-terminus  ali follow..  15  70..................LMGKVEAELQL---VSLEQAEANPVGRGRKEPEPLEKPNRPTTSFNWFINPMKTFVFLIWKNYKKYIIALVILIILTLFLVL.... 148
3 -6.260PF10954.8; A6T5A2_KLEP7/1-100; Protein of unknown function (DUF2755 topsan)  ali follow..  19  6FSKSLLGNKKRGALTGSHVAYGLFVLICCWAGAQMLSMLIHAPGVFERLMQAQDA---------SRPQVDISLAVGTLFGL---PFLIGCTFIGVLALIVRWRQ 98
4 -5.990PF00615.19; RGS10_CAEEL/135-251; Regulator of G protein signaling domain  ali follow..  8  21...................EQTSENEVDFWLDCQKFRSSKMSSRQNEARRIFDEYFAMGSPKKIYIERYLWCVVQAYLVNDPGWRHTFDVAQAYVGLKLAK... 102
5 -5.820PF12666.7; Q832B7_ENTFA/5-96; PrgI family protein  ali follow..  22  2.................................................................VPKDLAKVKTKVAFNLTKRQIVCFGGGGLVGVPAY.... 36
6 -5.630PF12856.7; C5M8F9_CANTT/116-242; Anaphase-promoting complex subunit 9  ali follow..  12  78.......................ESQLNAWESAESVNLVFNNDSSDDESDDDCDETKNNDNAIVSIPGYTQ................................. 127
7 -5.590PF09367.10; B2J481_NOSP7/3-174; CpeS-like protein  ali follow..  7  1.................DAMEFFQLSAGKWRSQRVTHHLAFKRSETGESDIQVETLEANHPEIIELCQYHEIDPSLSVGGSRVR.................... 67
8 -5.590PF01199.18; R9ARM7_WALI9/5-96; Ribosomal protein L34e  ali follow..  19  1.................................RRVQLRKPNPYNTKSNKRRVIKTPGGQLRYLHIHKKPTVPKGLALSGVPQKSVTRAYGGSRCAHCVRE... 85
9 -5.390PF17707.1; G3RDN7_GORGO/1-223; Family of unknown function (DUF5553 topsan)  ali follow..  20  99.QPLRHVTAYENTGHWERLASVVSSTLDSFLVLEPIKLFPVSSGSCRESIRISGELIGNA----HSPAPPRTP-ELETLGWDKQAVLSGAQVILVCAEV..... 223
10 -5.090PF01223.23; Q95TI9_DROME/65-324; DNA/RNA non-specific endonuclease  ali follow..  19  122FINAAPQWQTFNAGNWARVEDGLKLNVNCYTGVYGVTTLPNKDGVETPLYLAKDDNNNGLIPV---PK.................................... 193
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.