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Query: 3lhl_A mol:protein length:287 Putative agmatinase, from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLNYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKNSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIKEGLast
1 -91.100PF00491.21; Q164F5_ROSDO/34-308; Arginase family  ali follow..  30  1.......LDVAIVGIPMDIGTSWRSGTRFGPKEVRAESAMIRPYNMGTGAAPFDLQVADIGDLAINTFSLAKSLKIIEESYHAILNYDAMPLAIGGDHSITLPILRAMHKRHGPVALVHVDAHADVNDEMFGEKETHGTVFRRAYELILPDKTYQVGLRGTTADDFAEARAWGFQQFPAQELGLGGEIRRDIGSTPVYVSYDIDSLDPAFAPGTGTPEIGGLTTPQAMELIRAL--KGLNIVGADLVEVSPPYDASGNTALVGANILFELIC......... 275
2 -13.400PF12640.7; A7UTP5_ANOGA/103-265; UPF0489 topsan domain  ali follow..  14  1...........................................................................................IFVVEDHHEVLTFLYRCLGSLQGNRIVHFDSHPDMNKDDLLDSISIENWLMPTVFAGHVERIVWI-VSEGCYQPEDKLENRKRLQLEVCSVEEYPVAEDTDLAQGYILDIDLDYF........................................................................... 163
3 -7.240PF02882.19; FOLD1_ARATH/184-349; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain  ali follow..  14  37......................................................................................AGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVH-------------------AFTKDPEHITRKADIVIAAAGIPNLVRGSWLKPGAVVI--------TTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLEAAKR......................................... 166
4 -5.940PF10026.9; YJAZ_BACSU/66-258; Predicted Zn-dependent protease (DUF2268 topsan)  ali follow..  10  1.....................................................................FYGHIQKEEQYLKNKWQGPDVPIVT-RNRRIRLEFGSKSGLAFQDKMFLFLSSDLDFGSALMTHEYHHVCRLGHLKDVTLLDTIIMEGLAEYAVYER-FGRSQTAEWTTWYTPEQLQALYEKKIAPHRDIKRDNRLFPQLLFGKGYQPKMLGVGFNIVKKYLTASKASTADGLSIPAETF................................ 191
5 -5.870PF09793.9; B7PUR0_IXOSC/83-170; Anticodon-binding domain  ali follow..  12  27....................................................................................................................................................................................................................SAGVSPEGIHLFLAIRKTIDEVTWQDKNIIVMNEVTILPPYRPENCKGKSDNDPSVLHVRKI....... 88
6 -5.760PF02228.16; GAG_HTL1C/1-92; Major core protein p19  ali follow..  15  6................................................................................................................................................................................................................SRSASPIPRPPRGLAAHHWLNFLQAAYRLEPGPSSYDFHQLKKFLKIALETPVWICPINYSLLASLLPKGYPG 78
7 -5.560PF02086.15; B1I861_STRPI/17-264; D12 class N6 adenine-specific DNA methyltransferase  ali follow..  10  13..............................................................RELIPKTYNRYFEPFVGGGALFFDLAPKDAVINDFNAELINCYQQIKDNPQELIEI--EYYLDLRSADRDERIDMMSEVQRAARILYMLRVNFNGLYRVNSKNQFNVPYGRYKNPKIVDEELISAISVYINNNQLEIK-DFVYFDPPYIPLSETSAFTSYDQVRLRDAFKRLSDTGAYVMNSSSALVEELYKDFNIHYVEATR................ 246
8 -5.510PF05919.11; Q18L80_9VIRU/166-639; Mitovirus RNA-dependent RNA polymerase  ali follow..  10  1............LDFKISSTMAPWLIQSSGPCSKKGCNNTEGWLTAIRRLK-HLFTWGEITSILDPYKEGKWEKSDFYSFWASIQPL---------TDNVPIGKLAAKEEP-GKVRIFAM-----------------------------VDAVTQWLLKPLHEAIFKLLNIFAFDGTFDQIGQLEKFMDRMKDKAPYYYSFDLDRLPLSIQILIGQPM-GALSSWGMLALTHHLVVQDYIVLGDDIV-------GNHEVSIRYHYLMTEILKVKINPTKG. 276
9 -5.490PF03029.17; O01426_CAEEL/6-251; Conserved hypothetical ATP binding protein  ali follow..  11  1............................................................................................VIGGKSTFCAGLTDIFSQTKRPFLTINLDPAND------TMAYAPDVNITEMITVNDVMDRLGLGPNGALKYCIETLGAN------------CNWLLQKIEAHKKYLIID--------CPGQ-------KSEGELWKVIRFLEKSGVRLCALHLADSLYCSDPSKFISLSTLATMVTM........... 156
10 -5.450PF05575.11; Q56677_VIBCL/1-286; Vibrio cholerae RfbT protein  ali follow..  8  67..........................................................................LGMRHWIVNHCKHDTTYIDIGGTFCGI------AARHITQGKIIAIEPLTEMENSIRNNPLVEFHHFGCAIGENEGENIFEVYEFDNRVSSLYFKKNTDIADKVKNSQVLVRKLSSLDISPT-VIKIDAEGAEIEILNQ-----------------IYEFTEKHNGIEYYICFEFAMGRTFDEIFNIINSKFGSKAYFI........ 258
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.