current user: public

If you have questions about the server, please let us know.

Query: 3mmr_A mol:protein length:413 Arginase, from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .
# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMASKNVSIIGSPLAAGQPLGGVQLACDDLRKLGLHNVIDVLGWKYEDIGNIDNGDNEMKQEKKTNNYINNNDNNNDNNNDNNNDNNNNCYIPNGVIKEKKHDLSNNKMNGYVNHNFYGNYEENNVISTNDKYKNNCYYDNIRNIKEIGIFSKNLFDTMSNELRKKNFVLNIGGDHGVAFSSILSSLQMYQNLRVIWIDAHGDINIPETSPSGNYHGMTLAHTLGLFKKKVPYFEWSENLTYLKPENTAIIGIRDIDAYEKIILKKCNINYYTIFDIEKNGIYNTICTALEKIDPNSNCPIHISLDIDSVDNVFAPGTGTVAKGGLNYREINLLMKILAETKRVVSMDLVEYNPSLDEVDKKVHGDSLPILDNATKTGKLCLELIARVLGYDIVLast
1 -61.100PF00491.21; Q164F5_ROSDO/34-308; Arginase family  ali follow..  18  2....................................................................................DVAIVGIPMDIGTSWRSGTRFGPKEVRAESAMIRPYNMG-----TGAAPFDSLQVADIGDLAINTF---------SLAKSLKIIEESYHAILNYDAMPLAIGGDHSITLPILRAMHKRHGPVALVHVDAHADVNDEM-FGEKETHGTVFRRAY--------------EEGLILPDKTYQVGLRGTTADDFAEARAWGFQQFPAQELWHRSLTGLGGEIRRDIGS--KTPVYVSYDIDSLDPAFAPGTGTPEIGGLTTPQAMELIRAL-KGLNIVGADLVEVSPPYDASGNTALVGANILFELIC................... 275
2 -11.300PF12640.7; A7UTP5_ANOGA/103-265; UPF0489 topsan domain  ali follow..  14  1......................................................................................................................................................................................IFVVEDHHEVLTFLYRCLGSLQGNRIVHFDSHPDMCIPKHMPANYVFNKDDLLDS----SIENWLMPTVFAGHV--ERIVWI-IRTDSTLEYFVSEGCYQPEDKLENRKRLQLEVCVEEYPVAEDTDLAQGYILDIDLDYF.................................................................................... 163
3 -7.250PF08489.11; E1RDH8_METP4/131-242; Domain of unknown function (DUF1743 topsan)  ali follow..  13  3........................................................................................................................................................................................................................................................................GLIGAAAALSASFDDSTYELLAYRHHEEKGERIVDRGSIFLAEEKTYPHTWDSVDFGNNVVVCVPHTPDPVLYGIRGESPEWVKKAYIKSEEPFITALYRTNQGTDA.................................... 111
4 -7.210PF05575.11; Q56677_VIBCL/1-286; Vibrio cholerae RfbT protein  ali follow..  10  67.....................................................................................................................................................................LGMRHWIVNHCKHDTTYIDIGGTFCGIAARHITQGK------IIAIEPLTEM---------------ENSIRMNVQLNNPLVEFHHFGCAIGENE----GENIFEVYEFDNRVSSLYFKKNTDIADKVKNSQVLVRKLSSLDISPTNSVVIKIDAEGAEIEILNQ----------------IYEFTEKHNGIEYYICFEFAMGH--------------IQRSNRTFDEIFNIINSKFGSKA. 255
5 -6.320PF07075.11; R5JFY3_9BACE/44-387; Protein of unknown function (DUF1343 topsan)  ali follow..  13  4.............................................................................................................................................................VINPTSVIGEEQACLLDTLLSLNINVVFAPEHG--------------------FRGDADAGETVKDGKDSRTGTPIVSLYGNNKK--------PTVHQLQDVDIILFDIQDV-----------GARFYTYISTLFYVMEACAENGKEVIVLDRPNPC--YIDGPILRPSFRSFVGIPVLHGCTIGELALMINGINKTSEACRLTVVAMSPNLPNDQSIRLYASLCPFEATRISVGRGTTFPFQVLGAPNK 236
6 -5.820PF10869.8; Y596_METJA/2-136; Protein of unknown function (DUF2666 topsan)  ali follow..  17  7...................................................................................................................................................................................................................................................................................MAKHKKWFVVKKLKIDENTEDIEIARLLASIDETVLNKIYLPFDMNKLY-EIADGIYQKKKGRITEEEIAEVLKKLKSPA--TTRKLNEITESKEGKEILKAILNNIILERLGIQTRVSPKVIEKYIENS.. 135
7 -5.700PF05050.12; C3Z6H9_BRAFL/38-225; Methyltransferase FkbM domain  ali follow..  2........................................................................................................................................................................................CGANVASTVQLFRETYPGGTDYIIHSFELDARLAPYFASYSNHVLHCPVAVAGKDGNITAYTESAWFPDKGLV-NDRLWGGGGIFVHDEERDDAKAGRQLGVRNVIPMVDLSKWIQENTTP-----EDYVIFKLDVEGAE--------------------YEILEKMIKEGTFRWIDYGEFHGSLPVPNWPIERRLELK........................ 178
8 -5.440PF02563.16; R5GH66_9BACT/40-146; Polysaccharide biosynthesis/export protein  ali follow..  14  8..............................................................................................................................................................................................................................................................TVRPMDKLTIVVNSRDPQ--------------LTALFNLPEVRKQISVSGNSAPLNNSQGVLGYTVGSDGYIDFPVLGRLLVAGMTREQIAAHIKKELVTRDLVKDPVVTVE......................................... 105
9 -5.180PF06039.15; C1DJ81_AZOVD/24-513; Malate:quinone oxidoreductase (Mqo)  ali follow..  5.....................................................................................................................................................................................VLLIGGG--MSASLGTYLKELEPDWTIDIYERLDQVSSNPWNNAGTGHSLNYTSEKPDGHVDISKALAVTESFEISRQFWAHQIDKGVLSNPKSFINDVPHISFVWGDENVAFLKKRHEAMQHSSLYRGMEYTEDHATINEWAPLVVAATRMPIGTDVNFGEITRQLMGALTRHGNLKHEVRDFVRNDDADLAKGGEEKTVKAKFVFIGAGGGALPLLQKTG.... 252
10 -5.160PF13614.6; R5N830_9FIRM/2-184; AAA domain  ali follow..  10  14..........................................................................................................................................................................................GKTTTSINLAASLGYLKKKVLLVDLDPQGNSSTGLGIHKSNFENSIYELLTDRCELKDVIIKTKFQNLYIIPSYINLAGV------NFELMERSRLD-------PNFVKNAQLKKYLDVAKE--------SFDYIIID---PPSLELLTLNALMAADSVIILEGIMQLLNTIVLAQRDINPKLE..................................... 182

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 2 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.