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Query: 4ytk_A mol:protein length:130 Transcription elongation factor SPT5, from PDB1018

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPRLDYGKFDEIDPTTQQRKSRRPTFAHRAPPQLFNPTMALRLDQANLYKRDDRHFTYKNEDYIDGYLYKSFRIQHVETKNIQPTVEELARFGSKLast
1 -9.200PF16906.5; U5D8M2_AMBTC/8-121; Ribosomal proteins L26 eukaryotic, L24P archaeal  ali follow..  15  42VRKDDEVQVVRGTFKGREGKIVLVYRIKWVIHIERITR............................................................................................ 79
2 -7.390PF03162.13; SIW14_YEAST/116-280; Tyrosine phosphatase family  ali follow..  10  2IPPENFSHVVGEIYRSSFPRQENFSFLHERLKLKSILVLIPEEYPQENLNFLKLTGIK-SGNKEPFVNIPSHLLTKALEIVLNPANQPILIHCNRGKHRTGCLIGCIRK--LQNWSLTMIFDEYRRFA.. 132
3 -7.320PF18346.1; A0A0K9NVF3_ZOSMR/896-1014; Mind bomb SH3 repeat domain  ali follow..  17  62LNRGQHVQLKSGQSRDSIGTVLCVDDDGI-LRVGF............................................................................................... 105
4 -7.070PF07762.14; I1HDS5_BRADI/198-321; Protein of unknown function (DUF1618 topsan)  ali follow..  10  1.....WVDLSYGLLTSS---QFLYDNPNPDLELRFIPLPAGCERLAGTVDLDKERCVGMSDERLRYVQIHSPQGQPIVSKWMLVNWDTGLWLYDGYISFRE-IWDDESYKAMKLPEHVPTVAFIHPRDDD 121
5 -6.440PF09871.9; F7XP05_METZD/16-103; Uncharacterized protein conserved in archaea (DUF2098 topsan)  ali follow..  14  2IKVGSTVRYIN---TGTVGNITDIKQDSEGAWALL--RVDFLEVTAMKKVPKKAEKKKEYQPHRESLE.............................................................. 71
6 -6.420PF10492.9; Q7PQW1_ANOGA/526-633; Nrf1 activator activation site binding domain  ali follow..  14  6......VPVSAQMYQTMVANIQQVPNVDGTVCIT-VHNIASTHSQQQQQQQQQTSAAVVSTASNTTQNL----TISTNVGAASSQHHAATMLANYALSSNGTI--------LTVPQIQP........... 108
7 -6.360PF00467.29; RL24_STRCO/5-36; KOW motif  ali follow..  21  1..KGDLVQVITGKDKGKQGKVIAAFPREDRVLVE................................................................................................ 32
8 -6.050PF18335.1; R9K4E1_9FIRM/565-630; ATP-dependent RecD-like DNA helicase SH3 domain  ali follow..  13  35......NKNIVSVSNGDMGIIQDIFEDEEGNEKVRI.............................................................................................. 64
9 -5.980PF12757.7; U1GSL4_ENDPU/431-554; Eisosome protein 1  ali follow..  23  65....................................................................................................GKYLDQADVDAVARSRIQPTLDDINE.... 90
10 -5.930PF12102.8; K9TDX1_9CYAN/8-197; Domain of unknown function (DUF3578 topsan)  ali follow..  9  57.....WIAVRVGFF------AYLFCADFSGVYLSLLQGTDSKKKIYGLGVSREILRKQAKVFRGMISNDFQLELHEDIDLKLDTIPKETTARRLGQAYEAGHILLYYSQVNL------PSSEKMYA.... 176
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 2 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.